mRNA_H-paniculata_contig6157.13874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6157.13874.1
Unique NamemRNA_H-paniculata_contig6157.13874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 610 bits (1574), Expect = 6.220e-209
Identity = 304/333 (91.29%), Postives = 317/333 (95.20%), Query Frame = 1
Query:    4 TFLQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAAYYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            T  QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYL +EDGKEEPRSLQEIQAYIESENRRLE+DPVRSFDSREI IRMEYRFCPNMILIDTPGLIHAPSG NLNAEQR ++AAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRN+VTQVDHDLSRTVLVTTKLDTKLPQF   +DL+DFLRAP +QRMYRCMLGGPFFTTVPSGRVGR RD+AY+SNEAFV GVRRSERDDQM VA KLGPQA+PSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQ EMS+AEGRLL TEQE+
Sbjct:  109 TLAQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLALEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGSNLNAEQRAVAAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNIVTQVDHDLSRTVLVTTKLDTKLPQFGGGDDLQDFLRAPSIQRMYRCMLGGPFFTTVPSGRVGRARDSAYFSNEAFVHGVRRSERDDQMLVAAKLGPQAAPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQQEMSRAEGRLLTTEQEI 441          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 545 bits (1403), Expect = 6.730e-185
Identity = 268/330 (81.21%), Postives = 300/330 (90.91%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAAYYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLT+E+G+EEPRSL EIQAYIE+EN+RLE+DP+RSFD+REI+IRMEYRFCPNMILIDTPGLI AP GK+LNA+Q+ L   A+E+E LV+QKMRC+DY+ILCVEDTTDWKHATTRNVV QVD  L RTVLV TKLDTK+PQFS  EDL+DF+ APLMQ+MY  +LGGPFFT+VPSGRVGRGR++ Y SNEAFV GVRR+ERDD M VA KLGP A   CLPRVGVSRLRRFLERRVE+CY+RNVARIVPLLQ E++KAE RLLATE+E+
Sbjct:   97 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLENGREEPRSLSEIQAYIEAENKRLERDPIRSFDAREIMIRMEYRFCPNMILIDTPGLIQAPRGKHLNAQQQALLQVARESEQLVLQKMRCEDYIILCVEDTTDWKHATTRNVVMQVDPSLERTVLVCTKLDTKIPQFSTGEDLQDFIEAPLMQKMYGSLLGGPFFTSVPSGRVGRGRESTYLSNEAFVAGVRRAERDDSMGVAAKLGPAAGAYCLPRVGVSRLRRFLERRVEDCYKRNVARIVPLLQRELTKAEARLLATEREM 426          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A835Z9B7_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B7_9STRA)

HSP 1 Score: 540 bits (1390), Expect = 4.700e-182
Identity = 272/342 (79.53%), Postives = 301/342 (88.01%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAAYYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERRVEECYRR------------NVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLT+E+G+EEPRSL EIQAYIE+EN+RLE+DP+RSFD+REI+IRMEYRFCPNMILIDTPGLI AP GK+LNA+Q+ L  AAKE E LVIQKMRCQD++ILCVEDTTDWKHATTRNVV QVD  L RTVLV TKLDTKLPQFS  EDLEDF+ AP+M+RMY  +LGGPFFT+VPSGRVGRGR++AY+SNEAFV GVRR+ERDD M VA+KLGP A   CLP VGVSRLRRFLERRVE+CY              NVARIVPLLQ E++KAEGRLLATE+E+
Sbjct:   90 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLENGREEPRSLAEIQAYIEAENKRLERDPIRSFDAREIMIRMEYRFCPNMILIDTPGLIQAPRGKHLNAQQQALLQAAKECEQLVIQKMRCQDFIILCVEDTTDWKHATTRNVVMQVDPSLERTVLVCTKLDTKLPQFSSGEDLEDFIDAPVMRRMYSGLLGGPFFTSVPSGRVGRGRESAYFSNEAFVAGVRRAERDDSMHVASKLGPTAGTQCLPHVGVSRLRRFLERRVEDCYXXXXXXXXXXXXXXNVARIVPLLQRELTKAEGRLLATEREL 431          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 460 bits (1184), Expect = 9.810e-152
Identity = 229/331 (69.18%), Postives = 276/331 (83.38%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSG-KNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAAYYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDF KPFD+ A+L+VG QT GKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNP C QP C+LT+++GKEE RSL+EIQ YIE EN+RLE D +R FD REI++R+EYRFCPNMI+IDTPGL+ AP+  +++N +QRQL  AAKEAE+LV++KM+CQDY+ILCVEDTTDWKH+TTRN+V Q D DL RTVLVTTK DTKLPQF  SEDLEDFLRAPL+Q++Y  MLGGPF+T+VP GRVG G+D+A+ SNE FV+ V++ E+ D   +  +LG   +   L RVGVSRLRRFLE+RVEECYRRNVA+IVPLLQ E+  AE +L  T QE+
Sbjct:  143 QDFQKPFDATAILIVGQQTGGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPRCSQPHCFLTLDNGKEEARSLKEIQQYIEGENKRLENDELRCFDPREIMVRVEYRFCPNMIVIDTPGLLSAPAKLRHMNEQQRQLHQAAKEAEHLVLEKMKCQDYLILCVEDTTDWKHSTTRNIVMQADPDLRRTVLVTTKFDTKLPQFGTSEDLEDFLRAPLIQKLYPQMLGGPFYTSVPCGRVGMGKDSAFISNEVFVEAVKKVEKYDHARIEARLGSVGAAPLLQRVGVSRLRRFLEKRVEECYRRNVAKIVPLLQGELRSAEMKLGQTNQEL 473          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A7S3UW64_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW64_HETAK)

HSP 1 Score: 446 bits (1147), Expect = 1.970e-147
Identity = 222/330 (67.27%), Postives = 273/330 (82.73%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAAYYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDF KPFDSPAV+VVGHQTSGKSALIEALMGFQFNQVGGGTKTRRP+AL+MQ+NPDC QPRCYLT ++G+EE  +L++IQAYIE EN+RLE DP+R FD REI IRMEYRFCPNMI+IDTPGL+  P+G+NLN +QR L  A++EAE LV+ K+ C+DY+ILCVEDTTDWKHA+TRN+V QVD DL+RTV+VTTKLDTK+PQF ++ DL+DFLR  +M+R+Y  MLGGPFFT+VPSGRVG  R+AAYY+NE FV G RR +  D+  +  +LG  A    L +VG S LR FLE+RVE+ YRRNVA+IVP+LQ E+ K E +L   ++E+
Sbjct:   72 QDFKKPFDSPAVVVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPVALKMQFNPDCTQPRCYLTRDNGREELMTLRDIQAYIEVENKRLEADPLRCFDPREINIRMEYRFCPNMIVIDTPGLLQPPTGRNLNNQQRALLQASREAEALVLDKIDCKDYIILCVEDTTDWKHASTRNIVQQVDPDLARTVIVTTKLDTKIPQFGEARDLKDFLRPQIMRRLYPAMLGGPFFTSVPSGRVGSTREAAYYTNEDFVLGCRRLQLADESQIRRRLGAGAG-RVLEQVGTSHLRSFLEKRVEDNYRRNVAKIVPMLQMEVGKTEAKLRTIQKEL 400          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A7S1BLX2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLX2_9STRA)

HSP 1 Score: 406 bits (1043), Expect = 1.230e-130
Identity = 211/348 (60.63%), Postives = 255/348 (73.28%), Query Frame = 1
Query:    4 TFLQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNL---NAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRD---------AAYYSNEAFVQGVRRSERDDQMFVATKLG---PQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            T  QDF KPFD+PAVLVVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C  P C+L  +DG E P S+  +Q YIESENRRLE+DP+R FDSREI +RMEY++CPNMILIDTPGLI A  G      N E R L+A+A+E E LV+QKMRCQDY+ILCVEDT DWKH +TR +V + D DLSRTV+V TKLDTK+PQF  ++D+EDFLRA ++ R+    LGGPFFT+VPSGRV +  D          A+ ++EAFV   + +E  DQ+ +  +L    P A+   LP VG+S LR FLE RV +CYRRNVA+IVPLL  E    E RL   E ++
Sbjct:  155 TLAQDFRKPFDAPAVLVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPRCSTPNCFLRGDDGMERPASMSAVQEYIESENRRLEQDPIRCFDSREINVRMEYKYCPNMILIDTPGLIAAQGGSGRHPNNEEARALAASAREVEKLVVQKMRCQDYLILCVEDTMDWKHGSTREIVQRADPDLSRTVVVNTKLDTKVPQFGSTDDMEDFLRAQILDRLAPHKLGGPFFTSVPSGRVSKSLDDDNDGYEDGLAFATDEAFVDACKDNEESDQIVIRRRLKSSHPSAAEDLLPFVGLSYLRNFLEHRVYQCYRRNVAKIVPLLAAEREACEARLRRCEADL 502          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: B8C5C4_THAPS (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5C4_THAPS)

HSP 1 Score: 398 bits (1022), Expect = 1.270e-130
Identity = 215/344 (62.50%), Postives = 256/344 (74.42%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGK---NLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGR-----DAAYYSNEAFVQGVRRSERDDQMFV---ATKLGPQA--SP-SCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDF KPFD+PAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C  PRC+L  +DG E P+SL EIQ YIESEN+RLEKDPVRSFD REI +RMEY++CPNMILIDTPGLI AP  +   + N +QR L  AA+EAE LV+ KM+CQDY+ILCVEDT DWKH  TR VV + D DLSRTV+V TKLDTKLPQF    D+ DF+ A +++R+    LGGPF+T+VPSGRV         D  +  ++ FV      E  D+  V     +LG +   SP S LP+VG+SRLR FLERRV+ECYRRNVA+IVPLL+ E   AE RL   E+E+
Sbjct:   17 QDFQKPFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPRCSHPRCFLQGDDGIERPKSLTEIQEYIESENKRLEKDPVRSFDPREINVRMEYKYCPNMILIDTPGLISAPRIRKDGSANVQQRALLQAAREAERLVVSKMKCQDYIILCVEDTMDWKHGMTREVVQKADPDLSRTVIVNTKLDTKLPQFGTPTDVADFISARIVERLSPHKLGGPFYTSVPSGRVRHLESQNEDDFLFEDDDEFVAACAEKEDSDRELVWNRVKRLGNKEGKSPKSMLPKVGISRLRGFLERRVDECYRRNVAKIVPLLKAEYIAAERRLKVCEREL 360          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: B7G2X3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2X3_PHATC)

HSP 1 Score: 391 bits (1005), Expect = 6.020e-127
Identity = 208/354 (58.76%), Postives = 258/354 (72.88%), Query Frame = 1
Query:    4 TFLQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAP--------SGKNLNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGR-------GRDAAYYSNEAFVQGVRRSERDDQMFVATKL------GPQASPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            T  Q ++KPFDSPAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C +PR +L  EDG E P++L EIQAYIE EN+RLE+DP+RSFD REI +RMEY+ CPNMILIDTPGLI AP        S     A+QR L A+A+EAE LV++KM+C+DY+ILCVEDT+DWKH  TR VV + D DLSRTV+V TK DTK+PQF +  D+EDFLRAP++  +    LGGPFFT+VPSGRVGR         D  + S+E FV     +E+ D+  V ++L        +   S   RVG+ +LR FLE RV+ECYRRNV +I+P+LQ E S  E +L A ++E+
Sbjct:   35 TLAQAYNKPFDSPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPQCHEPRWFLVGEDGVEHPQTLTEIQAYIERENQRLERDPLRSFDPREINMRMEYKHCPNMILIDTPGLISAPRVPKGRAGSANAALAQQRALQASAREAERLVVEKMKCEDYIILCVEDTSDWKHGQTREVVQKADPDLSRTVIVNTKFDTKVPQFGNPADVEDFLRAPVLDSVCPNKLGGPFFTSVPSGRVGRMSDHNSMDGDFLFDSDEDFVVACADTEQTDRNVVLSRLRRLGKVDKKEKTSLTTRVGLKKLRTFLEERVDECYRRNVRKIIPMLQAEYSSTERKLKACDREL 388          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: K0SNP3_THAOC (Dynamin-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNP3_THAOC)

HSP 1 Score: 394 bits (1013), Expect = 6.560e-127
Identity = 217/346 (62.72%), Postives = 253/346 (73.12%), Query Frame = 1
Query:   13 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNL---NAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVG------RGRDAAYYSNEA----FVQGVRRSERDDQMFVATKLGPQASPSC---LPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            QDF KPFD+PAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C  PRC+L  +DG E P SL EIQ +IE+ENRRLEKDPVRSFDSREI +RMEYR CPNMILIDTPGLI AP  +     NA+QR L  AAKEAE LV+ KMRC DY+ILCVEDT DWKH TTR VV + D DLSRTV+V TKLDTKLPQF   +D+ DF+ A ++ RM    LGGPF+T+VPSGRV       +GR++           FV      E  D+  V  ++   +       +PRVG+SRLR FLERRV+ECYRRNVA+IVPLL+ E   AE RL A E+E+
Sbjct:  352 QDFQKPFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPRCSSPRCFLQGDDGVERPMSLVEIQEHIEAENRRLEKDPVRSFDSREINVRMEYRHCPNMILIDTPGLISAPRLRRESGGNAQQRALLHAAKEAERLVVGKMRCPDYIILCVEDTMDWKHGTTREVVQKADPDLSRTVIVNTKLDTKLPQFGTPKDVADFVSATIVDRMSPHKLGGPFYTSVPSGRVRHHSAPPQGRNSXXXXXXXXXXXFVAACAEKEDADRELVFGRIRRASEADLKRTMPRVGISRLRGFLERRVDECYRRNVAKIVPLLKAEYIAAERRLRACEREL 697          
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Match: A0A7S2R4H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4H5_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 6.030e-126
Identity = 213/366 (58.20%), Postives = 261/366 (71.31%), Query Frame = 1
Query:    4 TFLQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVRSFDSREIIIRMEYRFCPNMILIDTPGLIHAP---SGKN----LNAEQRQLSAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKLDTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGR-----------DAAYYSNEAFVQGVRRSERDDQMFVATKLGPQA---------------SPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV 1002
            T  QDF KPFD+PAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNP C +P C+L  +DG E P+SL EIQ YI  EN RLE+DPVRSFDSREI +RMEY++CPNMILIDTPGLI AP    G+N     N +QR L  +A+EAE LV++KMRCQDY+ILCVEDT DWKH  TR VV + D DLSRTV+V TKLDTK+PQF   +DL +FL+A +++++    LGGPFFTTVPSGRVGR             +  + +++ FV     +E  D+  V  KL                   + + +PR+G+SRLR FLERRV++CYRRNVA+IVPLLQ E + A  RL A ++E+
Sbjct:  186 TLAQDFRKPFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPRCSEPNCFLQGDDGTERPKSLAEIQEYINDENTRLERDPVRSFDSREINVRMEYKYCPNMILIDTPGLIAAPRVPKGRNGAGAPNMQQRALQKSAREAERLVVEKMRCQDYIILCVEDTMDWKHGATREVVQKADPDLSRTVIVNTKLDTKVPQFGTPKDLVEFLQAGIIEKISPHKLGGPFFTTVPSGRVGRPLGLLSDEEFDEYEYDFDNDDDFVNACMENEESDRSVVWEKLKKLKRLRSATANEDSDILPANALVPRIGISRLRGFLERRVDDCYRRNVAKIVPLLQAEHATAAKRLEACDKEL 551          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6157.13874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP8_ECTSI6.220e-20991.29ARC5, dynamin-related protein involved in plastid ... [more]
A0A835YPI8_9STRA6.730e-18581.21Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A835Z9B7_9STRA4.700e-18279.53Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A4D9DCK2_9STRA9.810e-15269.18Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A7S3UW64_HETAK1.970e-14767.27Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S1BLX2_9STRA1.230e-13060.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8C5C4_THAPS1.270e-13062.50Dynamin-type G domain-containing protein (Fragment... [more]
B7G2X3_PHATC6.020e-12758.76Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
K0SNP3_THAOC6.560e-12762.72Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A7S2R4H5_9STRA6.030e-12658.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6157contigH-paniculata_contig6157:5402..12273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score615.5
Seed ortholog evalue1.4e-173
Seed eggNOG ortholog2880.D8LDP8
Preferred nameARC5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
Ec32 ortholog descriptionARC5, dynamin-related protein involved in plastid division
Ec32 orthologEc-19_001480.2
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1005
Cds size1005
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.6889272-CDS-H-paniculata_contig6157:5401..55211622930694.6889272-CDS-H-paniculata_contig6157:5401..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 5402..5521 +
1691481409.7612739-CDS-H-paniculata_contig6157:5401..55211691481409.7612739-CDS-H-paniculata_contig6157:5401..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 5402..5521 +
1622930694.7086608-CDS-H-paniculata_contig6157:6698..68301622930694.7086608-CDS-H-paniculata_contig6157:6698..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 6699..6830 +
1691481409.7728808-CDS-H-paniculata_contig6157:6698..68301691481409.7728808-CDS-H-paniculata_contig6157:6698..6830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 6699..6830 +
1622930694.721958-CDS-H-paniculata_contig6157:8296..84791622930694.721958-CDS-H-paniculata_contig6157:8296..8479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 8297..8479 +
1691481409.781632-CDS-H-paniculata_contig6157:8296..84791691481409.781632-CDS-H-paniculata_contig6157:8296..8479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 8297..8479 +
1622930694.7332194-CDS-H-paniculata_contig6157:8963..90831622930694.7332194-CDS-H-paniculata_contig6157:8963..9083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 8964..9083 +
1691481409.7932992-CDS-H-paniculata_contig6157:8963..90831691481409.7932992-CDS-H-paniculata_contig6157:8963..9083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 8964..9083 +
1622930694.7472897-CDS-H-paniculata_contig6157:10582..106801622930694.7472897-CDS-H-paniculata_contig6157:10582..10680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 10583..10680 +
1691481409.8078995-CDS-H-paniculata_contig6157:10582..106801691481409.8078995-CDS-H-paniculata_contig6157:10582..10680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 10583..10680 +
1622930694.762075-CDS-H-paniculata_contig6157:11121..112751622930694.762075-CDS-H-paniculata_contig6157:11121..11275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 11122..11275 +
1691481409.8189223-CDS-H-paniculata_contig6157:11121..112751691481409.8189223-CDS-H-paniculata_contig6157:11121..11275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 11122..11275 +
1622930694.7766001-CDS-H-paniculata_contig6157:12075..122731622930694.7766001-CDS-H-paniculata_contig6157:12075..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 12076..12273 +
1691481409.829652-CDS-H-paniculata_contig6157:12075..122731691481409.829652-CDS-H-paniculata_contig6157:12075..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6157 12076..12273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6157.13874.1prot_H-paniculata_contig6157.13874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6157 5402..12273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6157.13874.1

>prot_H-paniculata_contig6157.13874.1 ID=prot_H-paniculata_contig6157.13874.1|Name=mRNA_H-paniculata_contig6157.13874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MTFLQDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRP
IALRMQYNPDCDQPRCYLTMEDGKEEPRSLQEIQAYIESENRRLEKDPVR
SFDSREIIIRMEYRFCPNMILIDTPGLIHAPSGKNLNAEQRQLSAAAKEA
ENLVIQKMRCQDYVILCVEDTTDWKHATTRNVVTQVDHDLSRTVLVTTKL
DTKLPQFSDSEDLEDFLRAPLMQRMYRCMLGGPFFTTVPSGRVGRGRDAA
YYSNEAFVQGVRRSERDDQMFVATKLGPQASPSCLPRVGVSRLRRFLERR
VEECYRRNVARIVPLLQHEMSKAEGRLLATEQEV*
back to top

mRNA from alignment at H-paniculata_contig6157:5402..12273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6157.13874.1 ID=mRNA_H-paniculata_contig6157.13874.1|Name=mRNA_H-paniculata_contig6157.13874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6872bp|location=Sequence derived from alignment at H-paniculata_contig6157:5402..12273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTTTTGCAGGACTTTCACAAGCCCTTCGACTCGCCGGCGGTACT GGTTGTGGGCCACCAGACTAGTGGGAAGTCGGCGTTGATTGAGGCATTGA TGGGGTTCCAGTTTAACCAGGTGGGCTATTATATATGTCATGATCTAATA TTGTTATTATTTAGTGGTGGTGATCTGTGGTGATTTGTAGTTTATGATGA TGTTTGACGGTGTTTTTTATTCGTTGTTACATTTCAGGAATAACATACTT TTATTTTTTTAATTATTTTGTGTTATTGACTGTAATTTTAGTGCTGTTTT TTCTCCTTTTTCGTTATTATGTATATTTATATACATATATATATACATGA TTGTATTTTGTAGGTGATTTGCATATTTGGAGTATGGTTTAGTAAATGCT CATTTTTTTTTTCCTAGCTGGTTGTCATGATGAAATGTTTGGATTATTTC GCTTCTTTTGTATAGGATCAAATACTACTTGATGAATAAGTACAAACAAT CATAGATGTACGTGTCCGCCAAACCACTAGGACAAGGTTTTACCCCCCCC CCCGGCCAAATACGAATAACTTGAAAATGGATTTCACAAAAAAAAAATGA AAATGTTCGACTGAGTTTCGGAATGAGCGGACACTCGAACAAAGTACCCA CCCCTGTTGATTCGATTCAAGAGTATTATTAACAGTCGTGGATGGTTCGG GGCACATAAAATACACGAGCTCATCCTGAAACTCAGGCGAATAATTTCAT TTTTTTTTGTGAAAATCAATTTGCAAGTATTCGTATTTGGCCGGGGGGTG CTGAGTTTTACGTGTAATTATTCGTACAGATGACGGTCTTCACCCTTGCT ATGTTTGTATTACTTATGGCGCACGAATATTTGGGGCATCTTCATCACTG CAGGGGCTGTTGCATACACGATAAACCAATTTATACATCTATATCTCATC TATAGAGCTAAATCATACAAGTATGGATAATGACCACAAATTGGTGATGA ACACAAAATGGTCGGCTAGCGTTTATCACACACTGTTAGTTATCATTAGC AAAGTCAGAGCCGCGGACGGCTACGGCCGGGCAGTTCGTTCGTGCCGACC TGTCCTAAACCCAAGTACTATTTAGCTAGGCTCACATAAAGGTTCTTTTT TTTTGAGAAGTTACTTGAGTATAGACTTGAAAAATGTTCCGGATTGACAA GGCCTATATCATTACGATGACCAACCACAACATTACCCTATTAATTAAAT AGTGAGAATATTTGAATAATCTTTGGTTTTTGGTTCTGTTTTGGTAGGTT GGGGGGGGGACCAAGACGCGCAGACCAATAGCGCTGCGCATGCAGTACAA CCCGGACTGCGATCAGCCGCGCTGCTATTTGACGATGGAGGATGGTAAGG AGGAACCGCGGTCTCTACAGGAGATACAGGTGACTTACTATTTGTCTGTA TGTGTATAGATATATATATATTTTTTCTTGTAATCATTTTTAGCTGAATC ACTCAGATCCACGGTGAGAGGAGAGATAGCTCCCGTGGAAACGTTCTATC GTCTGACCGCGGGTCGGGTCTGCATGATCGGGCTATTGTGATTTTGATGA AATCAGATACTGTCAGGTATGTGAGTAAGTTCAAGGGTTGAAAAGTGACA GGCCGACTGTTGATAGCTCTTATCATAAAGTAGCAATAAAGGCCACCAGG TATGCTTTCTCTGTGCCGTAAGGAAAGTTGGTTGAGTTTATAGACGTACG TAACCATCTCCGGGTTTTTTTTAATTAATTAATTTAGTTCGATATATTAT GATCCTACATGTTCTGGGGTTGATTCCCAACATTTGACGGAAATCGGCAA AACCAACTGGGTACACGCGCGGCGCAAAAAAAACAGTGAAAATAACAAGG TAGAAATTGGCGAACTTAGCCCAATCTTAAAGCGGCGATTGATCTCGATA AACGGGTCGGATGTACTTCGGATCAGCAGGTATGAGTCTTATCAAATTTT TGCTTTGCAATTATTCCGTCCGCAGCCTTCGAGAAGTTTTAGATCTGGAG ATATGATCTGCAAAATTCAATCGACTTTAGTTGTGGCGCTGAGAAAGTAT ATCAACTTCCCCCCCGGTCAAATACGAATACTTGGCGTGTTCGCCATGAA AAAAAAAAGGTATTCGCCTGAGTTTGAGCATGAGCGGACACATGTAATGA ATTACCCGCCCGTGTCGATTCGATTTACGAGTATTATTATCATAGCAGTC ATGGATGTTTCGGGGCACATACAAATATGTGAGCTCATTATGAAATTTAG ACGAATAGTTTCTGTATTATGTGAAAATATTTTGCAAGATTTCATTCCGG TCCGGTCCATTCAGCTCGATTCTTTTTTGTTTGATTCGGGCCGGTCCGTT TTTTTTTTCCTGTTTTTTTTCTTGTCTCTGTCCTTGAGTTCCGTTGTGTT TTTTTTCTGGTTGTTTTTTTCTTTATTCTTTCCTTTTCTGATCCGGCTGT TATTTCTCCCCAGTTAGTTCCATCCGATTGCTTTCTTGGTCCCCTGTCTA TAGGGTTCCTGAATTTGGATTTGGATTAGTTGGTTTCGTTTTCTGTCAGG CTTATCTTTTTCAATTTGATGGCTCAGGTTTTTGTACGGTTTTAGTGTCC GTCTTGTTTCATTTCCGTTCCTGTCCTCTTTTTTTTTTTTTCAATTGCTG CCGTGTCTGTCGGACTACTTGAATTAATTGATTTTTTTTTTTTCGTTTTT CTGTTCCGTTTATTTTTCCTGCCTCCCTTACTGTTCTGGTTAATTTTTTC GTTGGTTCCGTTTCTGTTCCGGTTATTGCAGTTTGTGGTTGATTCGGTTC TGTTCGGTTCTGTTTGTCCTGTTTTTTTTTTGTTTGATTTTGCAGGCGTA TATCGAGTCCGAGAACCGGCGGCTGGAGAAAGACCCTGTCCGGTCGTTCG ACTCACGGGAGATCATCATTCGGATGGAGTACCGATTCTGCCCCAACATG ATTCTCATCGACACCCCCGGGCTTATCCACGCTCCCTCCGGGAAAAACCT TAACGCCGAGCAACGTCAGCTAAGCGCGGTGAGGATATTTTTTTCTCTCT CTCTCTCTCATGATGTGAATATATATATATATATATATATTTGGGTGCAG TGAGCATATGTGGCGGGGTCGGTGATATTCTTTCCCGTTTTATGTCTGAG TCAGTACATATTTTTCAAAAGTTAACGCTTTTGATTGCGAAGGCGGGCGT CATTATCCATTTTTGTGTTCAAAAGCAACCATTAAGGTGGCTATTTTTTT TTTTTCACTGAAAGATAAGAGGTATAAAAAAACATTTAGTGATTTCTCTG TGCAGAATAATATGAGGAATCTTGTGTGTATCTCGGTCGTTATAGAACAA AAGAAATGGTCAACGAAAAATGGTTTTGTTTGTTTTCTCTTGTTGGTGTG ATTCATGACTGTTGCTCAATGTTCCCTTTTGTAATAATTTAGCTTCTTTT TTTTTATTACTACTATTCGTTATATATATATATATATACATATTACTTTT TTTAATGAAAAGGCGGCCAAAGAAGCGGAAAATCTGGTGATACAGAAGAT GCGCTGCCAGGACTACGTCATCTTGTGCGTCGAGGACACAACGGACTGGA AGCATGCCACCACGCGAAACGTCGTTACTCAGGTGAACGCGTCTTTTTAT TTCATCATGATGCCCGTTTCCTGGACAGGTTTTCATATGTAAAGCATATC AGTAGATCACATGTCACCCTGCCCCGCGCCGGCCAAAGCGATTGGCCATC GGAAATTACCCTGAAAGGAACATTTTTATGTCCTCCCGATACAAAGCATT TTGTACGTCCCTCGTGCCCTCCTTTCCCCGCTTTCAATGATTTGGCAAGT GCAACAGTAGGTTTCTGTTTTTTGTTTGGTGTTTACGGCTTTCCCCGTCC CCCCCTGTCGAGCGACCCCATGACAGGATGATAGTGGTGACGATGCTAAT TGTTGACTTGGTAGCGGTGATGAGGAAACTGGCTATTTACGGAGGAAGAT AGCAATCAGGAGCATTTTTTTTTTTTTTCCGGAAACTGTTTTTTTTTTTT TTTTCTTCGTTGGTCTACAGATTTTCGCTTCAAGCTGAAAACAAAAACAC AGTCTAACAACACTTGCACAGGCATGCAGCAACCGATTGGTGCTTCTCGT ATTGCATGAGTTACACCTCAAAATGTCAATTTTCTAATTTGCTCCTGATC ATAATATTGTGTTCCTCCGTAATAGACCTCACGACTACTATAGCTATGCC CATGGTTTGGTCTGTGGTTGGCTGGGGTGGTAATTTATTGGTCATTTTTC AATTTGTTCGGAAGAGAACCGAAATCAAATTTCGTAACTACCAAAGTGTG AATTTGCTAACGGCCAGTCGTTAGTGATGACCGAGTATATCTTCGGAGTG CTCATCCAGCCCTGTAGACAGGTGTGTAGCTAGGTGCGCTATGTAGCGCA TCTCAGCTATGATAGGTGGCGCCCTTATAAGTGATGAACCGAAGGAGGAC CGATACGATTATATAACCCGCGTTTTGCGGGGATCGGAAATCGGGGCTTG GTACTTGTTATCTTGCCGTGGGCTTAAGCTCCTTCCCTCACAACGCTTCC GAGTGGTGCATACAGAGGGTGCACACTCACTCTGGGGTGGAACAAGGATA GGTGGCGCCCGTTTGTTTTTTGCCGATGGGGGCCTCAGAATTAACTTTCA TTTCACAATTCGTTCATATCTTATTTAATCCTCTTGGACTTCCTCGTTGT GGTGGAGGGGAAAAAAGTCATATCGCAAAACGCAAAATGCAAAATGCCGA GCATATTTCGTTACGAGTAATATAATTCACGAGCTCTGCGTAACTGATTC AGAGGGTTGTAAGCCCCTACACCTGCATCTGTTATTATGAGCGCCGCAGG GTTGTTTTTGCGACGAATGTTGAGTGCTGCAGTCGAGCACGCCTTCCATA CGTCTGAGTTTTTTCATGTACTGTCTGGGCTGGGGTGTGCTAGCTGTTTG AGGAGAAGTGCCTTGCCTCCCTACCCTCCTTTTGATCGTGTCATTAGACA GAGGGTTTGAGGTAAGAACTGGAGTTTGAAAGATTCAAGGGTTAAGGTTT ATAATGTTTTGGCCGGTTGCTGTGTGGACAGGTGGATCATGACCTATCTC GCACGGTACTCGTTACGACGAAGCTGGACACGAAGCTGCCGCAGTTTAGT GATTCGGAGGATCTCGAGGACTTCCTACGGTAAGAATTACCCCCCCCCCC AAAAAAAATAATAATAATAATAATAATCATAATAATAATGAAAGCTAGCA GACCATCCACCACCAAAACATTCCTGACGCGAGCACTATGCGGGATGGAG TTTTTTTTTTTCGTGAGCTAATTCGGATTAGCCGGCGCTTACACAAAGGT AATTTTAATCCCCCTATTTTTAGCATGCCCCAGTGGTCATTATCCATTGA AGTCTTTCACCCCCCGGATTTATGGATGAACATGGAAAAGATTCTCTTTG TCTGGATGTGCATTGAGTATGAGTACGTATTCCCTGTGCCCTGGGCTATC GACGACTGCGGCGAGTACAATTGTACATGCATTGAGATAGAGAGATAATC AGGGGGTCAACACTTGGCGTCATGGTTTGATCCCCCCCATCTGATCCACC CACGTGCCTGGATGCATCAGGGCGCCTCTGATGCAACGCATGTACCGGTG CATGCTCGGCGGCCCATTCTTCACGACTGTCCCGTCTGGGCGCGTCGGCC GCGGCCGTGACGCTGCATACTACTCTAACGAGGCGTTTGTGCAAGGCGTT CGACGTTCGGAGCGTGATGACCAGGTTAGAACGGAGACTTTTGGCCAAGA CGGGGGGGGGAGGGGGGGGGAGTAGCAACTCTGAGTATCAGATTATAACT TGATTGTACCCGTTTTAAGGTTATGCAACCGACTTTCATCTGCAGTTGTA GATCCCTGCATTAATGATGACCAATAAAGGGGGGCAATCTGTGGATTTCA AGTACACATGTGTGTCATGCTGAGGTCATGTAGCTCACACTAGCTTGCTA TTGTGGTTTACACTCACTGTATACTGCCATGCGCTAGAGTTTACCCCTCT TGATTGCTGTAATTTTTTGTATGATAAGTGTGTATAGATGTCCATCTACA AGTGCATCACGTCGACATTCGTACAATGGGGTTATTATTTATAATTTCAG GGTTGCAGTTCAATTGACAGCGGCGAGGTGGTTTACTACAATAACGAGAA TTTCAGCGAGCATAACGTAGGGTTGTTTTTCAATTTCCATGGTGTCAGTC ATTCTTGTGGCCCTCCCCTCAATATTGGTCTGTTGGTGCCATCAGTCATC ACTCCGCAGTGTAAATTGCCTGAGCGTAGGGTACGTGCCTTCACTTTTGG CTGATGGATGTCGGCATGTTTTTTTATTGGACTTATTGACAATAGCATAG CATATCATTTTTGATGTGTTAGCTTTTGATTACGTGCATGGGAAGACAAG AGTTTCTTCGACAAAAAAAAAAAAAAAAAGGAAAAGTTTAACCATGAACA TCTGGACCCGTCGTTGGGTAGGTCGGTCCGTCAGTGTGTGATACAAAACA AATGTCGTATGATAACACGCATAGATGTTCGTGGCGACCAAGCTCGGGCC GCAGGCGTCACCGTCCTGCCTACCTCGCGTGGGCGTGTCGCGCCTGCGCC GGTTCCTGGAACGACGCGTGGAAGAGTGCTACCGCAGGAATGTTGCGCGG ATCGTTCCCCTTCTTCAGCACGAGATGTCTAAGGCAGAGGGCCGCCTTTT GGCTACGGAGCAGGAGGTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6157:5402..12273+

>mRNA_H-paniculata_contig6157.13874.1 ID=mRNA_H-paniculata_contig6157.13874.1|Name=mRNA_H-paniculata_contig6157.13874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig6157:5402..12273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTTTTGCAGGACTTTCACAAGCCCTTCGACTCGCCGGCGGTACT
GGTTGTGGGCCACCAGACTAGTGGGAAGTCGGCGTTGATTGAGGCATTGA
TGGGGTTCCAGTTTAACCAGATGACATTTTTGCAGGACTTTCACAAGCCC
TTCGACTCGCCGGCGGTACTGGTTGTGGGCCACCAGACTAGTGGGAAGTC
GGCGTTGATTGAGGCATTGATGGGGTTCCAGTTTAACCAGGTTGGGGGGG
GGACCAAGACGCGCAGACCAATAGCGCTGCGCATGCAGTACAACCCGGAC
TGCGATCAGCCGCGCTGCTATTTGACGATGGAGGATGGTAAGGAGGAACC
GCGGTCTCTACAGGAGATACAGGTTGGGGGGGGGACCAAGACGCGCAGAC
CAATAGCGCTGCGCATGCAGTACAACCCGGACTGCGATCAGCCGCGCTGC
TATTTGACGATGGAGGATGGTAAGGAGGAACCGCGGTCTCTACAGGAGAT
ACAGGCGTATATCGAGTCCGAGAACCGGCGGCTGGAGAAAGACCCTGTCC
GGTCGTTCGACTCACGGGAGATCATCATTCGGATGGAGTACCGATTCTGC
CCCAACATGATTCTCATCGACACCCCCGGGCTTATCCACGCTCCCTCCGG
GAAAAACCTTAACGCCGAGCAACGTCAGCTAAGCGCGGCGTATATCGAGT
CCGAGAACCGGCGGCTGGAGAAAGACCCTGTCCGGTCGTTCGACTCACGG
GAGATCATCATTCGGATGGAGTACCGATTCTGCCCCAACATGATTCTCAT
CGACACCCCCGGGCTTATCCACGCTCCCTCCGGGAAAAACCTTAACGCCG
AGCAACGTCAGCTAAGCGCGGCGGCCAAAGAAGCGGAAAATCTGGTGATA
CAGAAGATGCGCTGCCAGGACTACGTCATCTTGTGCGTCGAGGACACAAC
GGACTGGAAGCATGCCACCACGCGAAACGTCGTTACTCAGGCGGCCAAAG
AAGCGGAAAATCTGGTGATACAGAAGATGCGCTGCCAGGACTACGTCATC
TTGTGCGTCGAGGACACAACGGACTGGAAGCATGCCACCACGCGAAACGT
CGTTACTCAGGTGGATCATGACCTATCTCGCACGGTACTCGTTACGACGA
AGCTGGACACGAAGCTGCCGCAGTTTAGTGATTCGGAGGATCTCGAGGAC
TTCCTACGGTGGATCATGACCTATCTCGCACGGTACTCGTTACGACGAAG
CTGGACACGAAGCTGCCGCAGTTTAGTGATTCGGAGGATCTCGAGGACTT
CCTACGGGCGCCTCTGATGCAACGCATGTACCGGTGCATGCTCGGCGGCC
CATTCTTCACGACTGTCCCGTCTGGGCGCGTCGGCCGCGGCCGTGACGCT
GCATACTACTCTAACGAGGCGTTTGTGCAAGGCGTTCGACGTTCGGAGCG
TGATGACCAGGGCGCCTCTGATGCAACGCATGTACCGGTGCATGCTCGGC
GGCCCATTCTTCACGACTGTCCCGTCTGGGCGCGTCGGCCGCGGCCGTGA
CGCTGCATACTACTCTAACGAGGCGTTTGTGCAAGGCGTTCGACGTTCGG
AGCGTGATGACCAGATGTTCGTGGCGACCAAGCTCGGGCCGCAGGCGTCA
CCGTCCTGCCTACCTCGCGTGGGCGTGTCGCGCCTGCGCCGGTTCCTGGA
ACGACGCGTGGAAGAGTGCTACCGCAGGAATGTTGCGCGGATCGTTCCCC
TTCTTCAGCACGAGATGTCTAAGGCAGAGGGCCGCCTTTTGGCTACGGAG
CAGGAGGTGTGAATGTTCGTGGCGACCAAGCTCGGGCCGCAGGCGTCACC
GTCCTGCCTACCTCGCGTGGGCGTGTCGCGCCTGCGCCGGTTCCTGGAAC
GACGCGTGGAAGAGTGCTACCGCAGGAATGTTGCGCGGATCGTTCCCCTT
CTTCAGCACGAGATGTCTAAGGCAGAGGGCCGCCTTTTGGCTACGGAGCA
GGAGGTGTGA
back to top