mRNA_H-paniculata_contig61559.13872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61559.13872.1
Unique NamemRNA_H-paniculata_contig61559.13872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.290e-14
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   25 RRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLLASGKVPAAAWDAVKENVP 204
            RRS YGRG WS +F  + N K   D   ES    C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:   34 RRSKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVP 92
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BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.360e-13
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   25 RRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLLASGKVPAAAWDAVKENVP 204
            RRS YGRG WS +F  + N K   D   ES    C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:  281 RRSKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVP 339
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BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.050e-13
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   25 RRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLLASGKVPAAAWDAVKEN 198
            RRS YGRG WS +F  + N K   D   ES    C+TFPSLL SGK+P+A WDAV+E+
Sbjct:  129 RRSKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEES 185
[Close]
BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 RRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLLASGKVPAAAWDAVKENVP 204
            RRS YGRG WS +  L    K   D   ES    C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:  232 RRSKYGRGVWSQE-NLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVP 290
[Close]
BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.960e-11
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   25 RRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLLASGKVPAAAWDAVKENVP 204
            RRS YGRG WS  F L  + K  PD   ES    C+TF SLL SGK+P+  W AV+E+VP
Sbjct:  236 RRSRYGRGVWSQQF-LKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVP 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61559.13872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4U0_9PHAE1.290e-1456.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE1.360e-1356.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3A9_9PHAE6.050e-1355.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE1.410e-1255.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI1.960e-1153.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61559contigH-paniculata_contig61559:188..411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size226
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.485635-CDS-H-paniculata_contig61559:187..4091622930694.485635-CDS-H-paniculata_contig61559:187..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61559 188..409 +
1691481409.6710415-CDS-H-paniculata_contig61559:187..4091691481409.6710415-CDS-H-paniculata_contig61559:187..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61559 188..409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.500489-UTR-H-paniculata_contig61559:409..4111622930694.500489-UTR-H-paniculata_contig61559:409..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61559 410..411 +
1691481409.6806405-UTR-H-paniculata_contig61559:409..4111691481409.6806405-UTR-H-paniculata_contig61559:409..411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig61559 410..411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61559.13872.1prot_H-paniculata_contig61559.13872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61559 188..409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61559.13872.1

>prot_H-paniculata_contig61559.13872.1 ID=prot_H-paniculata_contig61559.13872.1|Name=mRNA_H-paniculata_contig61559.13872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PKTKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASVACYTFPSLL
ASGKVPAAAWDAVKENVPPPLEE*
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mRNA from alignment at H-paniculata_contig61559:188..411+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61559.13872.1 ID=mRNA_H-paniculata_contig61559.13872.1|Name=mRNA_H-paniculata_contig61559.13872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=224bp|location=Sequence derived from alignment at H-paniculata_contig61559:188..411+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAAACCAAGAAGGTCCCACGTAGGCGATCACTGTACGGCAGAGGCGC
GTGGTCGGCAGATTTTAGGCTAGACAGCAACGGTAAGAGAGTCCCTGACA
CGGACATAGAGTCAGCGAGTGTGGCCTGCTATACTTTCCCCTCCTTGTTG
GCGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAGAAAACGT
TCCGCCCCCTCTAGAGGAGTAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig61559:188..411+

>mRNA_H-paniculata_contig61559.13872.1 ID=mRNA_H-paniculata_contig61559.13872.1|Name=mRNA_H-paniculata_contig61559.13872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig61559:188..411+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAAACCAAGAAGGTCCCACGTAGGCGATCACTGTACGGCAGAGGCGC
GTGGTCGGCAGATTTTAGGCTAGACAGCAACGGTAAGAGAGTCCCTGACA
CGGACATAGAGTCAGCGAGTGTGGCCTGCTATACTTTCCCCTCCTTGTTG
GCGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAGAAAACGT
TCCGCCCCCTCTAGAGGAGTAGCCAAAAACCAAGAAGGTCCCACGTAGGC
GATCACTGTACGGCAGAGGCGCGTGGTCGGCAGATTTTAGGCTAGACAGC
AACGGTAAGAGAGTCCCTGACACGGACATAGAGTCAGCGAGTGTGGCCTG
CTATACTTTCCCCTCCTTGTTGGCGAGCGGTAAAGTGCCGGCAGCAGCAT
GGGACGCTGTTAAAGAAAACGTTCCGCCCCCTCTAGAGGAGTAG
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