mRNA_H-paniculata_contig61558.13871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61558.13871.1
Unique NamemRNA_H-paniculata_contig61558.13871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.320e-31
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 VREQVVPCFPPDYEILKVFRDSYEGFLKHLLLPLVCSEDRMADCDVRDILEAIKWLEYYNTRVDR 195
            V  +VVPCFPP+Y+IL+VFRDSYEGFLK LLLPLVC ED+MADCDVRDILEAIKWLEYYNT+V+R
Sbjct:  294 VDSEVVPCFPPEYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKVER 358
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BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.690e-30
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 VREQVVPCFPPDYEILKVFRDSYEGFLKHLLLPLVCSEDRMADCDVRDILEAIKWLEYYNTRVDR 195
            V  +VVPCFP +Y+IL+VFRDSYEGFLK LLLPLVC ED+MADCDVRDILEAIKWLEYYNT+V+R
Sbjct:  131 VESEVVPCFPREYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKVER 195
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BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.670e-21
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 VREQVVPCFPPDYEILKVFRDSYEGFLKHLLLPLVCSEDRMADCDVRDILEAIKWLEYYNTRVD 192
            V E VVPCFPP YEILKVFR +YEGFL  LL PLV S++R+   DV+D+LEAIKWLEYY ++V+
Sbjct:  312 VSELVVPCFPPHYEILKVFRTAYEGFLNDLLYPLVSSQERIDTYDVKDMLEAIKWLEYYVSKVE 375
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BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Match: A0A7S2D483_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D483_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.420e-8
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 VREQVVPCFPPDYEILKVFRDSYEGFLK-HLLLPLVCS-EDRMADCDVRDILEAIKWLEYYN 180
            V + VVPCFPPDY+ILK++R +YE FL+ H+   L+ + E  ++  D   +L  I+WL+ YN
Sbjct:   76 VHQYVVPCFPPDYQILKMWRHAYEEFLENHIESHLLHNNEGTVSHMDPEGLLRMIEWLDKYN 137
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BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Match: A0A2D4CDE3_PYTIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDE3_PYTIN)

HSP 1 Score: 51.2 bits (121), Expect = 8.050e-6
Identity = 21/63 (33.33%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 VREQVVPCFPPDYEILKVFRDSYEGFLKHLLLPLVCSEDRMADCDVRDILEAIKWLEYYNTRV 189
            V+  VVPCFPPD ++L +F  +Y   L++ +    C++  +    + + L+ ++W+EYYNT +
Sbjct:  339 VQSDVVPCFPPDIDVLHIFAGTYNTILENEI-SRQCTQPEVG---IAERLQLVQWIEYYNTEI 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61558.13871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5L8_ECTSI1.320e-3183.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE2.690e-3081.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA9.670e-2167.19Exocyst complex component Sec6-domain-containing p... [more]
A0A7S2D483_9STRA4.420e-845.16Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A2D4CDE3_PYTIN8.050e-633.33Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61558contigH-paniculata_contig61558:670..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue8.8e-27
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
Ec32 ortholog descriptionExocyst complex component Sec6
Ec32 orthologEc-00_008950.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.4262018-CDS-H-paniculata_contig61558:669..8671622930694.4262018-CDS-H-paniculata_contig61558:669..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61558 670..867 +
1691481409.6586716-CDS-H-paniculata_contig61558:669..8671691481409.6586716-CDS-H-paniculata_contig61558:669..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61558 670..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61558.13871.1prot_H-paniculata_contig61558.13871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61558 670..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61558.13871.1

>prot_H-paniculata_contig61558.13871.1 ID=prot_H-paniculata_contig61558.13871.1|Name=mRNA_H-paniculata_contig61558.13871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
VREQVVPCFPPDYEILKVFRDSYEGFLKHLLLPLVCSEDRMADCDVRDIL
EAIKWLEYYNTRVDR*
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mRNA from alignment at H-paniculata_contig61558:670..867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61558.13871.1 ID=mRNA_H-paniculata_contig61558.13871.1|Name=mRNA_H-paniculata_contig61558.13871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig61558:670..867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGTGAACAGGTTGTGCCGTGCTTCCCGCCAGACTACGAGATCCTCAA
GGTCTTCCGCGATTCGTATGAGGGCTTCCTGAAACACTTGCTGTTGCCTC
TGGTATGCAGCGAGGACCGCATGGCAGACTGTGACGTGAGGGACATATTG
GAGGCGATTAAGTGGCTGGAATACTACAACACCAGGGTCGACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig61558:670..867+

>mRNA_H-paniculata_contig61558.13871.1 ID=mRNA_H-paniculata_contig61558.13871.1|Name=mRNA_H-paniculata_contig61558.13871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig61558:670..867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGTGAACAGGTTGTGCCGTGCTTCCCGCCAGACTACGAGATCCTCAA
GGTCTTCCGCGATTCGTATGAGGGCTTCCTGAAACACTTGCTGTTGCCTC
TGGTATGCAGCGAGGACCGCATGGCAGACTGTGACGTGAGGGACATATTG
GAGGCGATTAAGTGGCTGGAATACTACAACACCAGGGTCGACAGGTGAGT
GCGTGAACAGGTTGTGCCGTGCTTCCCGCCAGACTACGAGATCCTCAAGG
TCTTCCGCGATTCGTATGAGGGCTTCCTGAAACACTTGCTGTTGCCTCTG
GTATGCAGCGAGGACCGCATGGCAGACTGTGACGTGAGGGACATATTGGA
GGCGATTAAGTGGCTGGAATACTACAACACCAGGGTCGACAGGTGA
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