mRNA_H-paniculata_contig61544.13870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61544.13870.1
Unique NamemRNA_H-paniculata_contig61544.13870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A6H5JM72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM72_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.360e-33
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            AIQQLGRSHRSNQ SAPVF LLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR
Sbjct:  659 AIQQLGRSHRSNQASAPVFRLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 728
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: D7FWB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.410e-33
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            AIQQLGRSHRSNQ SAPVF LLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR
Sbjct:  680 AIQQLGRSHRSNQASAPVFRLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 749
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A1E7ENR2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENR2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.400e-29
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            A+QQLGRSHRS Q SAPV+ L+VT+LGGERRFAAAV+KRL SLGALTKGDRRAATGAD S FDLD+KYG+
Sbjct:  120 AVQQLGRSHRSGQSSAPVYKLVVTNLGGERRFAAAVSKRLMSLGALTKGDRRAATGADMSEFDLDSKYGK 189
[Close]
BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: F0YQ71_AURAN (Helicase_C_4 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQ71_AURAN)

HSP 1 Score: 108 bits (271), Expect = 1.340e-28
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            +IQQLGRSHR+NQ SAPV+ LL T+LGGE RFA+AVAKRLASLGALTKGDRRAA+G D S FDLDT++GR
Sbjct:   85 SIQQLGRSHRANQESAPVYKLLTTNLGGEARFASAVAKRLASLGALTKGDRRAASGQDLSDFDLDTRHGR 154
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A448ZC88_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC88_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.980e-28
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            A+QQLGRSHRS Q SAP++ L+VT+LGGERRFAAAV+KRLASLGALTKGDRRAATGAD S FDLD+KYG+
Sbjct:  853 AVQQLGRSHRSGQESAPIYKLVVTNLGGERRFAAAVSKRLASLGALTKGDRRAATGADLSDFDLDSKYGK 922
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A7R9ZUA6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZUA6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.390e-27
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            A+QQLGRSHRS Q SAP++ L+VT+LGGERRFAAAV+KRLASLGALTKGDRRAATG+D S FDLD+KYG+
Sbjct:   75 AVQQLGRSHRSGQESAPIYKLVVTNLGGERRFAAAVSKRLASLGALTKGDRRAATGSDMSEFDLDSKYGK 144
[Close]
BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A7S2LKV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKV5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.560e-26
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            AIQQLGRSHRS Q SAP + ++VT+LGGERRFAAAVAKR+ SLGALTKGDRRAATG+D S FD+D+++GR
Sbjct:   30 AIQQLGRSHRSGQISAPTYNMVVTELGGERRFAAAVAKRMCSLGALTKGDRRAATGSDLSEFDIDSRFGR 99
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BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A6P8II56_ACTTE (protein FORGETTER 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8II56_ACTTE)

HSP 1 Score: 110 bits (274), Expect = 2.480e-26
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            A+QQLGRSHRSNQRS P++ L+ T+LGGERRFAAAVA+RL SLGALTKGDRRAATGAD + F+ DT YGR
Sbjct:  385 AVQQLGRSHRSNQRSGPIYKLVTTNLGGERRFAAAVARRLQSLGALTKGDRRAATGADLNEFNFDTNYGR 454
[Close]
BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: A0A835YXT2_9STRA (P-loop containing NTP hydrolase pore-1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.400e-26
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            +IQQLGRSHRS+Q SAP++ LL+T+LGGERRFA+AVAKRL SLGALTKGDRRAA+G D S+FDLD KYGR
Sbjct:  607 SIQQLGRSHRSHQESAPLYKLLMTNLGGERRFASAVAKRLMSLGALTKGDRRAASGGDMSAFDLDNKYGR 676
[Close]
BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Match: UPI001F04554F (protein FORGETTER 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04554F)

HSP 1 Score: 109 bits (273), Expect = 3.400e-26
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   25 AIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLASLGALTKGDRRAATGADFSSFDLDTKYGR 234
            A+QQLGRSHRSNQ S P++ L+ T+LGGERRFAAAVAKRL SLGALTKGDRRAATGAD S F+ DT YGR
Sbjct:  621 AVQQLGRSHRSNQSSCPIYKLVTTNLGGERRFAAAVAKRLQSLGALTKGDRRAATGADLSQFNFDTTYGR 690
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61544.13870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM72_9PHAE4.360e-3397.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWB6_ECTSI4.410e-3397.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7ENR2_9STRA5.400e-2981.43Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
F0YQ71_AURAN1.340e-2878.57Helicase_C_4 domain-containing protein (Fragment) ... [more]
A0A448ZC88_9STRA5.980e-2881.43Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9ZUA6_9STRA1.390e-2780.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S2LKV5_9STRA1.560e-2675.71Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A6P8II56_ACTTE2.480e-2677.14protein FORGETTER 1-like n=1 Tax=Actinia tenebrosa... [more]
A0A835YXT2_9STRA3.400e-2678.57P-loop containing NTP hydrolase pore-1-domain-cont... [more]
UPI001F04554F3.400e-2678.57protein FORGETTER 1-like n=1 Tax=Xenia sp. Carnegi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61544contigH-paniculata_contig61544:340..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.5e-28
Seed eggNOG ortholog2880.D7FWB6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930694.375788-CDS-H-paniculata_contig61544:339..5731622930694.375788-CDS-H-paniculata_contig61544:339..573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61544 340..573 +
1691481409.6462483-CDS-H-paniculata_contig61544:339..5731691481409.6462483-CDS-H-paniculata_contig61544:339..573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61544 340..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61544.13870.1prot_H-paniculata_contig61544.13870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61544 340..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61544.13870.1

>prot_H-paniculata_contig61544.13870.1 ID=prot_H-paniculata_contig61544.13870.1|Name=mRNA_H-paniculata_contig61544.13870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MQINCNTTAIQQLGRSHRSNQRSAPVFCLLVTDLGGERRFAAAVAKRLAS
LGALTKGDRRAATGADFSSFDLDTKYGR
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mRNA from alignment at H-paniculata_contig61544:340..573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61544.13870.1 ID=mRNA_H-paniculata_contig61544.13870.1|Name=mRNA_H-paniculata_contig61544.13870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig61544:340..573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAATCAACTGCAACACAACAGCTATCCAGCAACTCGGCAGAAGCCA
TAGAAGCAATCAACGCTCCGCACCGGTATTTTGCCTGCTAGTCACCGATC
TGGGCGGGGAACGACGATTTGCCGCGGCCGTCGCCAAGAGGTTAGCCAGC
TTAGGAGCTCTTACTAAGGGAGATCGAAGGGCTGCCACTGGAGCAGACTT
TAGTTCTTTCGACCTGGACACCAAATATGGGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig61544:340..573+

>mRNA_H-paniculata_contig61544.13870.1 ID=mRNA_H-paniculata_contig61544.13870.1|Name=mRNA_H-paniculata_contig61544.13870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig61544:340..573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAATCAACTGCAACACAACAGCTATCCAGCAACTCGGCAGAAGCCA
TAGAAGCAATCAACGCTCCGCACCGGTATTTTGCCTGCTAGTCACCGATC
TGGGCGGGGAACGACGATTTGCCGCGGCCGTCGCCAAGAGGTTAGCCAGC
TTAGGAGCTCTTACTAAGGGAGATCGAAGGGCTGCCACTGGAGCAGACTT
TAGTTCTTTCGACCTGGACACCAAATATGGGCGCATGCAAATCAACTGCA
ACACAACAGCTATCCAGCAACTCGGCAGAAGCCATAGAAGCAATCAACGC
TCCGCACCGGTATTTTGCCTGCTAGTCACCGATCTGGGCGGGGAACGACG
ATTTGCCGCGGCCGTCGCCAAGAGGTTAGCCAGCTTAGGAGCTCTTACTA
AGGGAGATCGAAGGGCTGCCACTGGAGCAGACTTTAGTTCTTTCGACCTG
GACACCAAATATGGGCGC
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