mRNA_H-paniculata_contig615.13862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig615.13862.1
Unique NamemRNA_H-paniculata_contig615.13862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig615.13862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig615contigH-paniculata_contig615:8485..9719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size942
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.3289924-CDS-H-paniculata_contig615:8484..91761622930693.3289924-CDS-H-paniculata_contig615:8484..9176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 8485..9176 -
1691481409.1363902-CDS-H-paniculata_contig615:8484..91761691481409.1363902-CDS-H-paniculata_contig615:8484..9176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 8485..9176 -
1622930693.3463366-CDS-H-paniculata_contig615:9469..97191622930693.3463366-CDS-H-paniculata_contig615:9469..9719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 9470..9719 -
1691481409.1464012-CDS-H-paniculata_contig615:9469..97191691481409.1464012-CDS-H-paniculata_contig615:9469..9719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 9470..9719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig615.13862.1prot_H-paniculata_contig615.13862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig615 8485..9719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig615.13862.1

>prot_H-paniculata_contig615.13862.1 ID=prot_H-paniculata_contig615.13862.1|Name=mRNA_H-paniculata_contig615.13862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
SILEDGSEIQEAESSSSCQSDDPEGHFVGSNAGGGGDNGTDRSRDSLSSQ
GPEGGAGRPLEPAEFGTSRAGGDAALSGSGSDADYRNAGVAAERAIAAIG
GSGNAIGATGFNWLAASGSGSSDEEEALYGYPRGSGGLSMGASSQRAEQQ
QQQSELNRVATAGGLPRQGDDSPSGHSGRIRSRPMPTIVAPDSGSSARAD
GGTASGERSRDIRGRVEPRARVGGGRAASGGAGERGQAWVSQALEMEVLQ
ATVAATVAAVAQETLTDSMCSGFSDSASSSNINSGGGGSGGGRKNSSNQS
NASTAGTTGTNGDG
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mRNA from alignment at H-paniculata_contig615:8485..9719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig615.13862.1 ID=mRNA_H-paniculata_contig615.13862.1|Name=mRNA_H-paniculata_contig615.13862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-paniculata_contig615:8485..9719- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATACTCGAGGACGGTAGTGAAATTCAAGAAGCAGAAAGCAGCTCGAG
TTGCCAGTCCGACGACCCCGAGGGACATTTTGTTGGCAGCAACGCGGGCG
GCGGGGGGGATAACGGCACAGATCGCTCGCGAGACTCGCTGTCGTCCCAG
GGGCCGGAAGGCGGGGCTGGGAGGCCGCTAGAGCCGGCCGAGTTTGGGAC
GTCACGTGCTGGTGGTGATGCTGCCTTGTCTGGAAGCGGGAGCGATGCAG
GTGACACGAAACATATTGTTGGGGCTGTGTGCTAGATTCGGAAACTGTCC
TATTCACCAAGGGGATCCAATTGCTGGCTGAATCCATCGGTTTACTGTCG
TCCGGGCTTGTCTAAGCGAGCGCCATTATACGGCACCAGTGAAGCGGGGA
CGTCACAAATATGTGTTTTTTGCCCCCCCTGCGGCCTCTATTTATCGTCC
GGTATAACAGCGCGGTGCGTGACAGCGTCCTGCCGCACCTCGTGACCCCC
ACAAAATCCGGACCCTCATTACGTGTCTGGCGTCAATACTCAGATTACAG
GAACGCAGGAGTGGCAGCGGAGAGGGCAATCGCCGCAATCGGGGGAAGTG
GAAACGCGATCGGCGCCACCGGATTCAATTGGTTGGCCGCTTCGGGTAGC
GGATCCTCTGACGAAGAGGAAGCTCTTTATGGATACCCGAGGGGCAGCGG
GGGGCTATCGATGGGAGCTTCCAGTCAGCGGGCGGAGCAGCAGCAGCAGC
AAAGCGAGCTCAATCGCGTCGCAACCGCGGGCGGTCTACCACGGCAAGGT
GACGACAGCCCATCCGGTCATAGCGGTCGCATTCGCAGTCGACCTATGCC
CACTATAGTGGCACCCGATTCTGGGTCTTCTGCAAGAGCTGACGGTGGCA
CGGCGAGCGGGGAACGCAGCAGAGATATTCGCGGCCGCGTTGAGCCTCGC
GCCCGTGTGGGGGGAGGGCGAGCCGCGAGTGGTGGAGCGGGAGAAAGAGG
GCAAGCGTGGGTGAGTCAGGCGTTGGAGATGGAAGTTTTGCAGGCGACGG
TGGCGGCGACGGTTGCGGCGGTTGCACAGGAAACGCTCACCGATTCCATG
TGTTCCGGGTTTAGCGATAGCGCCAGCAGCAGCAACATCAACAGCGGTGG
TGGCGGCAGCGGTGGTGGCAGAAAAAACAGCAGTAACCAATCAAACGCCA
GCACTGCTGGGACGACTGGCACAAACGGAGATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig615:8485..9719-

>mRNA_H-paniculata_contig615.13862.1 ID=mRNA_H-paniculata_contig615.13862.1|Name=mRNA_H-paniculata_contig615.13862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig615:8485..9719- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATACTCGAGGACGGTAGTGAAATTCAAGAAGCAGAAAGCAGCTCGAG
TTGCCAGTCCGACGACCCCGAGGGACATTTTGTTGGCAGCAACGCGGGCG
GCGGGGGGGATAACGGCACAGATCGCTCGCGAGACTCGCTGTCGTCCCAG
GGGCCGGAAGGCGGGGCTGGGAGGCCGCTAGAGCCGGCCGAGTTTGGGAC
GTCACGTGCTGGTGGTGATGCTGCCTTGTCTGGAAGCGGGAGCGATGCAG
AGTATACTCGAGGACGGTAGTGAAATTCAAGAAGCAGAAAGCAGCTCGAG
TTGCCAGTCCGACGACCCCGAGGGACATTTTGTTGGCAGCAACGCGGGCG
GCGGGGGGGATAACGGCACAGATCGCTCGCGAGACTCGCTGTCGTCCCAG
GGGCCGGAAGGCGGGGCTGGGAGGCCGCTAGAGCCGGCCGAGTTTGGGAC
GTCACGTGCTGGTGGTGATGCTGCCTTGTCTGGAAGCGGGAGCGATGCAG
ATTACAGGAACGCAGGAGTGGCAGCGGAGAGGGCAATCGCCGCAATCGGG
GGAAGTGGAAACGCGATCGGCGCCACCGGATTCAATTGGTTGGCCGCTTC
GGGTAGCGGATCCTCTGACGAAGAGGAAGCTCTTTATGGATACCCGAGGG
GCAGCGGGGGGCTATCGATGGGAGCTTCCAGTCAGCGGGCGGAGCAGCAG
CAGCAGCAAAGCGAGCTCAATCGCGTCGCAACCGCGGGCGGTCTACCACG
GCAAGGTGACGACAGCCCATCCGGTCATAGCGGTCGCATTCGCAGTCGAC
CTATGCCCACTATAGTGGCACCCGATTCTGGGTCTTCTGCAAGAGCTGAC
GGTGGCACGGCGAGCGGGGAACGCAGCAGAGATATTCGCGGCCGCGTTGA
GCCTCGCGCCCGTGTGGGGGGAGGGCGAGCCGCGAGTGGTGGAGCGGGAG
AAAGAGGGCAAGCGTGGGTGAGTCAGGCGTTGGAGATGGAAGTTTTGCAG
GCGACGGTGGCGGCGACGGTTGCGGCGGTTGCACAGGAAACGCTCACCGA
TTCCATGTGTTCCGGGTTTAGCGATAGCGCCAGCAGCAGCAACATCAACA
GCGGTGGTGGCGGCAGCGGTGGTGGCAGAAAAAACAGCAGTAACCAATCA
AACGCCAGCACTGCTGGGACGACTGGCACAAACGGAGATGGCATTACAGG
AACGCAGGAGTGGCAGCGGAGAGGGCAATCGCCGCAATCGGGGGAAGTGG
AAACGCGATCGGCGCCACCGGATTCAATTGGTTGGCCGCTTCGGGTAGCG
GATCCTCTGACGAAGAGGAAGCTCTTTATGGATACCCGAGGGGCAGCGGG
GGGCTATCGATGGGAGCTTCCAGTCAGCGGGCGGAGCAGCAGCAGCAGCA
AAGCGAGCTCAATCGCGTCGCAACCGCGGGCGGTCTACCACGGCAAGGTG
ACGACAGCCCATCCGGTCATAGCGGTCGCATTCGCAGTCGACCTATGCCC
ACTATAGTGGCACCCGATTCTGGGTCTTCTGCAAGAGCTGACGGTGGCAC
GGCGAGCGGGGAACGCAGCAGAGATATTCGCGGCCGCGTTGAGCCTCGCG
CCCGTGTGGGGGGAGGGCGAGCCGCGAGTGGTGGAGCGGGAGAAAGAGGG
CAAGCGTGGGTGAGTCAGGCGTTGGAGATGGAAGTTTTGCAGGCGACGGT
GGCGGCGACGGTTGCGGCGGTTGCACAGGAAACGCTCACCGATTCCATGT
GTTCCGGGTTTAGCGATAGCGCCAGCAGCAGCAACATCAACAGCGGTGGT
GGCGGCAGCGGTGGTGGCAGAAAAAACAGCAGTAACCAATCAAACGCCAG
CACTGCTGGGACGACTGGCACAAACGGAGATGGC
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