mRNA_H-paniculata_contig615.13861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig615.13861.1
Unique NamemRNA_H-paniculata_contig615.13861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig615.13861.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.740e-10
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   58 VCGLRSTHFAPGYLGVAWPDPVDSKAATRASAEAQARILMKLERAAAKKLRELEERTRRTRQEMTDRRKRRNLLLE 285
            V GLR+THFAPG++GVAWPDP +  AA R    A+ R+L K+E A+A+K+ E+EER           +KRRN +LE
Sbjct:  744 VPGLRATHFAPGFVGVAWPDPFEEPAAVRQLNAARERVLTKIEEASARKIAEVEERAXXXXXXXXXXQKRRNTMLE 819
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BLAST of mRNA_H-paniculata_contig615.13861.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.530e-10
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   58 VCGLRSTHFAPGYLGVAWPDPVDSKAATRASAEAQARILMKLERAAAKKLRELEERTRRTRQEMTDRRKRRNLLLE 285
            V GLR+THFAPG++GVAWPDP +  +A R    A+ R+L K+E A+A+K+ E+EER           +KRRN +LE
Sbjct:  780 VPGLRATHFAPGFVGVAWPDPFEEPSAVRQLNAARERVLTKIEEASARKIAEVEERAXXXXXXXXXXQKRRNTMLE 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig615.13861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUQ6_ECTSI3.740e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR9_9PHAE9.530e-1048.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig615contigH-paniculata_contig615:6325..7197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.2687798-CDS-H-paniculata_contig615:6325..63501622930693.2687798-CDS-H-paniculata_contig615:6325..6350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 6326..6350 -
1691481409.1072834-CDS-H-paniculata_contig615:6325..63501691481409.1072834-CDS-H-paniculata_contig615:6325..6350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 6326..6350 -
1622930693.2867298-CDS-H-paniculata_contig615:6928..71971622930693.2867298-CDS-H-paniculata_contig615:6928..7197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 6929..7197 -
1691481409.126486-CDS-H-paniculata_contig615:6928..71971691481409.126486-CDS-H-paniculata_contig615:6928..7197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 6929..7197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig615.13861.1prot_H-paniculata_contig615.13861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig615 6326..7197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig615.13861.1

>prot_H-paniculata_contig615.13861.1 ID=prot_H-paniculata_contig615.13861.1|Name=mRNA_H-paniculata_contig615.13861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
ARVVAPAAAEAAVGESDEGVCGLRSTHFAPGYLGVAWPDPVDSKAATRAS
AEAQARILMKLERAAAKKLRELEERTRRTRQEMTDRRKRRNLLLEQST
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mRNA from alignment at H-paniculata_contig615:6325..7197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig615.13861.1 ID=mRNA_H-paniculata_contig615.13861.1|Name=mRNA_H-paniculata_contig615.13861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at H-paniculata_contig615:6325..7197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGGTGGTGGCGCCTGCGGCGGCCGAAGCAGCCGTCGGTGAATCAGA
TGAAGGGGTATGTGGTTTACGCTCGACGCACTTTGCACCCGGATATCTCG
GCGTAGCGTGGCCAGATCCTGTTGACAGCAAGGCGGCTACACGAGCTTCC
GCCGAAGCGCAGGCGAGGATACTGATGAAGCTGGAACGGGCGGCGGCGAA
GAAGCTGCGCGAGCTGGAAGAGCGCACACGGAGGACTCGGCAGGAGATGA
CTGATCGGCGGAAACGTAGGTGCGTCTGTCTGTCTGCATGGATCCGTGTG
TTTGTTGAACTGTGGCTGGGTGGTCAGGGTCAGAGAAATGGCGGGCACTG
GTACATGTTCCCCCCCCTATGTACCTAATTGCATTGTTACCATCGGTAGT
CGTCGTGGTTTTGTTTCATGGTGATGCTGTCTACGGTGTATGAAACTCGC
CGTATGTTGATTTCATGAAACTTGTAGGGTTAATGAAGCGCTCGCCCCGC
AGTAGTCCGTCATTGCTCGCCGCGAGAGAAGCGTTACCTCGTGCCAGCTT
GATCATTTCAAAACGGGGGTTGCTGTACGAGTGGTCTTGAAAGTCAAGGT
ATGGCGTTTTTATAAACTTGACAACATCATAAAGTTGTAATGATGCTGCT
CCCCGCTATAGTCCTTAAATCCTCCGACGTATATCCTGCTTACCACAGTC
GTCGTCGTCGTCGTCGTCGTCTCTCTCTATATATATCTGTATCTATTTCT
GTCGTCGTCCATCTCCCTCCTACCGTCTTCGACTTGATACGAGAGTTGAT
TCAGTGACCACCTCGCAAATATGCACTCACACGCGCAAAAACTACAGAAA
CCTTCTCCTGGAACAAAGCACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig615:6325..7197-

>mRNA_H-paniculata_contig615.13861.1 ID=mRNA_H-paniculata_contig615.13861.1|Name=mRNA_H-paniculata_contig615.13861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig615:6325..7197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAGGGTGGTGGCGCCTGCGGCGGCCGAAGCAGCCGTCGGTGAATCAGA
TGAAGGGGTATGTGGTTTACGCTCGACGCACTTTGCACCCGGATATCTCG
GCGTAGCGTGGCCAGATCCTGTTGACAGCAAGGCGGCTACACGAGCTTCC
GCCGAAGCGCAGGCGAGGATACTGATGAAGCTGGAACGGGCGGCGGCGAA
GAAGCTGCGCGAGCTGGAAGAGCGCACACGGAGGACTCGGCAGGAGATGA
CTGATCGGCGGAAACGTAGGCCAGGGTGGTGGCGCCTGCGGCGGCCGAAG
CAGCCGTCGGTGAATCAGATGAAGGGGTATGTGGTTTACGCTCGACGCAC
TTTGCACCCGGATATCTCGGCGTAGCGTGGCCAGATCCTGTTGACAGCAA
GGCGGCTACACGAGCTTCCGCCGAAGCGCAGGCGAGGATACTGATGAAGC
TGGAACGGGCGGCGGCGAAGAAGCTGCGCGAGCTGGAAGAGCGCACACGG
AGGACTCGGCAGGAGATGACTGATCGGCGGAAACGTAGAAACCTTCTCCT
GGAACAAAGCACAAAACCTTCTCCTGGAACAAAGCACA
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