mRNA_H-paniculata_contig615.13860.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig615.13860.1
Unique NamemRNA_H-paniculata_contig615.13860.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig615.13860.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.740e-13
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:  166 GGGWRPPVAKGVVIGGRSLRSTTESWDEQRRAKAEEARVTADIEEAFRTLTGVADLRRQDAVGARRDRARESNARAD 396
            G G     AKGVVI G + R   ESW+E RR+KAEE R+   +E+AF+ L GVA  RR++AVGARRDRARESNARA+
Sbjct:  986 GAGAGVKAAKGVVIAGGTTRPRFESWNELRRSKAEEIRLQGTMEKAFKALHGVAARRRENAVGARRDRARESNARAE 1062
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BLAST of mRNA_H-paniculata_contig615.13860.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 8.580e-13
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:  130 AAAAAVSEGNKCGGGWRPPVAKGVVIGGRSLRSTTESWDEQRRAKAEEARVTADIEEAFRTLTGVADLRRQDAVGARRDRARESNARADE 399
            AAA A       G G    VAKG VI G + R   ESW+E RR+KAEE R+   +E+AF+ L GVA  RR++AV ARRDRARESNARA+E
Sbjct:  938 AAAEAFEAAAGVGAGXGVKVAKGAVIAGGTPRPRFESWNELRRSKAEEIRLQGTMEKAFKALHGVAARRRENAVYARRDRARESNARAEE 1027
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig615.13860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRR9_9PHAE4.740e-1359.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUQ6_ECTSI8.580e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig615contigH-paniculata_contig615:4585..6037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size783
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.208752-CDS-H-paniculata_contig615:4586..51141622930693.208752-CDS-H-paniculata_contig615:4586..5114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 4587..5114 -
1691481409.0852838-CDS-H-paniculata_contig615:4586..51141691481409.0852838-CDS-H-paniculata_contig615:4586..5114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 4587..5114 -
1622930693.2245436-CDS-H-paniculata_contig615:5785..60371622930693.2245436-CDS-H-paniculata_contig615:5785..6037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 5786..6037 -
1691481409.0942798-CDS-H-paniculata_contig615:5785..60371691481409.0942798-CDS-H-paniculata_contig615:5785..6037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 5786..6037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig615.13860.1prot_H-paniculata_contig615.13860.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig615 4587..6037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig615.13860.1

>prot_H-paniculata_contig615.13860.1 ID=prot_H-paniculata_contig615.13860.1|Name=mRNA_H-paniculata_contig615.13860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
VNSRAQALCPGSSDPQGGRGKGGTSTGGRTDRATAAAVAVLAGAAAAAVS
EGNKCGGGWRPPVAKGVVIGGRSLRSTTESWDEQRRAKAEEARVTADIEE
AFRTLTGVADLRRQDAVGARRDRARESNARADEGHGRASKRRRMQAEIKA
AELAAKAREAHKVAARLKEVAVAAAAATAKKEARARGRSSSRGRSVDRRG
NTRGRATSSRARLHDATRCSASPRRQPSTRQSEQLRRGDRSRGKSWHIDE
QPQTPGNFNG
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mRNA from alignment at H-paniculata_contig615:4585..6037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig615.13860.1 ID=mRNA_H-paniculata_contig615.13860.1|Name=mRNA_H-paniculata_contig615.13860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1453bp|location=Sequence derived from alignment at H-paniculata_contig615:4585..6037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAATTCTAGAGCTCAGGCGCTGTGTCCGGGGTCGAGTGATCCGCAGGG
CGGGAGGGGCAAAGGCGGTACCAGTACGGGCGGCCGTACTGACAGGGCTA
CTGCAGCGGCCGTGGCGGTTTTGGCTGGGGCAGCAGCGGCGGCGGTGTCA
GAGGGTAACAAGTGCGGCGGGGGGTGGAGGCCGCCGGTGGCGAAAGGAGT
TGTGATAGGAGGCAGGTCGCTCAGGTCGACTACGGAGTCGTGGGATGAAC
AGGTGCGTGTTGCTGTGGTAGGCGTGTATCATGGCTGTGGGGCGAGACGA
GAAAATTGTCCGCTTCTTGTCGTGGACAGCAGCTGTTTTTAGAAATCAGC
TGAATGATGGAAACAGAAAAGTTTGGTAATGACATTGTCGAATAAATACA
AGGAATGTGATGATAGTTTGGAATAGAGAATTGTAGTGCACTTTTGAGCT
GTGGTTTGGGTATATGGCTTTACCAGCTCAGGGGGAATCTGGTGTGGTCT
ACTCAGTAGTATAGTGTTGCATGTGTGGTTGTCAAGAATTATGCAGTAGC
GTTTTTCCGGGAATAATTTATCGTCTTTAAAAGTTCCAATGTTCTGTTTT
GCTCGTTCAACGCATGTAGAAGCAAAATTTATTGACAACTTATTTTCTGA
GTACCGTAGTGGCTGCTCTGCACGAAAGACGCTTTTGTGTCGAATTGAAG
CAATACCAACATGACGAAGGTCACGTCGATTTCTGCGTATTCCTGTCAAC
GGCATGGCAGAAAAAGAACACAAACGCTAACATCCCCGCACCCCCCTTAC
CCTCGCGCCCTCCCTTCAACCACATGACAATCCACTTGTGCACCTTTTCG
ACGTCCGTGTTTAATATACATATATATTGTACTTAACGTTTAATCGCAAC
TGCTGTACCGCACGGATCTGCAGCGCCGGGCCAAAGCCGAGGAGGCTCGC
GTAACGGCCGATATTGAAGAAGCGTTCAGGACCCTTACAGGTGTGGCCGA
CCTGCGTCGACAGGATGCGGTGGGCGCACGTCGTGATCGCGCACGCGAAA
GCAATGCCAGGGCCGACGAGGGACACGGTCGAGCGAGTAAGCGGCGGCGC
ATGCAAGCAGAAATCAAGGCGGCGGAACTCGCGGCTAAGGCGCGCGAAGC
GCATAAGGTGGCAGCCAGGTTAAAGGAAGTCGCAGTGGCAGCGGCGGCAG
CGACAGCGAAAAAAGAAGCTCGCGCTCGAGGTAGGTCAAGCAGCCGAGGG
AGGTCGGTCGATCGCCGCGGGAACACCCGGGGGCGCGCTACCTCTTCGAG
AGCCCGTTTGCACGACGCTACAAGGTGCTCGGCGTCGCCTCGACGGCAGC
CATCGACCCGGCAGTCGGAGCAACTGCGGCGGGGTGACCGCAGCAGAGGA
AAGTCGTGGCACATTGACGAGCAACCCCAGACGCCCGGCAATTTTAACGG
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig615:4585..6037-

>mRNA_H-paniculata_contig615.13860.1 ID=mRNA_H-paniculata_contig615.13860.1|Name=mRNA_H-paniculata_contig615.13860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig615:4585..6037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAATTCTAGAGCTCAGGCGCTGTGTCCGGGGTCGAGTGATCCGCAGGG
CGGGAGGGGCAAAGGCGGTACCAGTACGGGCGGCCGTACTGACAGGGCTA
CTGCAGCGGCCGTGGCGGTTTTGGCTGGGGCAGCAGCGGCGGCGGTGTCA
GAGGGTAACAAGTGCGGCGGGGGGTGGAGGCCGCCGGTGGCGAAAGGAGT
TGTGATAGGAGGCAGGTCGCTCAGGTCGACTACGGAGTCGTGGGATGAAC
AGGTAAATTCTAGAGCTCAGGCGCTGTGTCCGGGGTCGAGTGATCCGCAG
GGCGGGAGGGGCAAAGGCGGTACCAGTACGGGCGGCCGTACTGACAGGGC
TACTGCAGCGGCCGTGGCGGTTTTGGCTGGGGCAGCAGCGGCGGCGGTGT
CAGAGGGTAACAAGTGCGGCGGGGGGTGGAGGCCGCCGGTGGCGAAAGGA
GTTGTGATAGGAGGCAGGTCGCTCAGGTCGACTACGGAGTCGTGGGATGA
ACAGCGCCGGGCCAAAGCCGAGGAGGCTCGCGTAACGGCCGATATTGAAG
AAGCGTTCAGGACCCTTACAGGTGTGGCCGACCTGCGTCGACAGGATGCG
GTGGGCGCACGTCGTGATCGCGCACGCGAAAGCAATGCCAGGGCCGACGA
GGGACACGGTCGAGCGAGTAAGCGGCGGCGCATGCAAGCAGAAATCAAGG
CGGCGGAACTCGCGGCTAAGGCGCGCGAAGCGCATAAGGTGGCAGCCAGG
TTAAAGGAAGTCGCAGTGGCAGCGGCGGCAGCGACAGCGAAAAAAGAAGC
TCGCGCTCGAGGTAGGTCAAGCAGCCGAGGGAGGTCGGTCGATCGCCGCG
GGAACACCCGGGGGCGCGCTACCTCTTCGAGAGCCCGTTTGCACGACGCT
ACAAGGTGCTCGGCGTCGCCTCGACGGCAGCCATCGACCCGGCAGTCGGA
GCAACTGCGGCGGGGTGACCGCAGCAGAGGAAAGTCGTGGCACATTGACG
AGCAACCCCAGACGCCCGGCAATTTTAACGGTCGCCGGGCCAAAGCCGAG
GAGGCTCGCGTAACGGCCGATATTGAAGAAGCGTTCAGGACCCTTACAGG
TGTGGCCGACCTGCGTCGACAGGATGCGGTGGGCGCACGTCGTGATCGCG
CACGCGAAAGCAATGCCAGGGCCGACGAGGGACACGGTCGAGCGAGTAAG
CGGCGGCGCATGCAAGCAGAAATCAAGGCGGCGGAACTCGCGGCTAAGGC
GCGCGAAGCGCATAAGGTGGCAGCCAGGTTAAAGGAAGTCGCAGTGGCAG
CGGCGGCAGCGACAGCGAAAAAAGAAGCTCGCGCTCGAGGTAGGTCAAGC
AGCCGAGGGAGGTCGGTCGATCGCCGCGGGAACACCCGGGGGCGCGCTAC
CTCTTCGAGAGCCCGTTTGCACGACGCTACAAGGTGCTCGGCGTCGCCTC
GACGGCAGCCATCGACCCGGCAGTCGGAGCAACTGCGGCGGGGTGACCGC
AGCAGAGGAAAGTCGTGGCACATTGACGAGCAACCCCAGACGCCCGGCAA
TTTTAACGGT
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