mRNA_H-paniculata_contig615.13859.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig615.13859.1
Unique NamemRNA_H-paniculata_contig615.13859.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig615.13859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig615contigH-paniculata_contig615:2387..4121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1035
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig615.13859.1prot_H-paniculata_contig615.13859.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig615 2387..3602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.1155734-CDS-H-paniculata_contig615:2386..26301622930693.1155734-CDS-H-paniculata_contig615:2386..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 2387..2630 -
1691481409.0493736-CDS-H-paniculata_contig615:2386..26301691481409.0493736-CDS-H-paniculata_contig615:2386..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 2387..2630 -
1622930693.1305983-CDS-H-paniculata_contig615:3312..36021622930693.1305983-CDS-H-paniculata_contig615:3312..3602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 3313..3602 -
1691481409.059817-CDS-H-paniculata_contig615:3312..36021691481409.059817-CDS-H-paniculata_contig615:3312..3602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig615 3313..3602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930693.1446607-UTR-H-paniculata_contig615:3602..36661622930693.1446607-UTR-H-paniculata_contig615:3602..3666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig615 3603..3666 -
1691481409.0694728-UTR-H-paniculata_contig615:3602..36661691481409.0694728-UTR-H-paniculata_contig615:3602..3666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig615 3603..3666 -
1622930693.1604881-UTR-H-paniculata_contig615:3685..41211622930693.1604881-UTR-H-paniculata_contig615:3685..4121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig615 3686..4121 -
1691481409.0772638-UTR-H-paniculata_contig615:3685..41211691481409.0772638-UTR-H-paniculata_contig615:3685..4121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig615 3686..4121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig615.13859.1

>prot_H-paniculata_contig615.13859.1 ID=prot_H-paniculata_contig615.13859.1|Name=mRNA_H-paniculata_contig615.13859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MAAPDERSERNEEEAISTSAGRQQATSCGDSGGGDEESKRADHHRQDLKV
EEKDSRNYRDSTVVDESVGRGTDRAEHGRGRGGGDRKDTGKDRRSGSPNV
SGTRLLEHHSSFRPSTPREAEVRRNGEVRSHGRGGVSSSADNTDGNNSGR
RNDDDIDKDGGVGAGNSDSYYDSEDHME
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mRNA from alignment at H-paniculata_contig615:2387..4121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig615.13859.1 ID=mRNA_H-paniculata_contig615.13859.1|Name=mRNA_H-paniculata_contig615.13859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1735bp|location=Sequence derived from alignment at H-paniculata_contig615:2387..4121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATCGAACGAGGGACGAGACCGGGGCACAGCCCGTGGAAGGCGTTCGGC
AAGTGTTCGTGGTGGTTCAGAACCCCACGACAAGGTATATAAATTTCGGC
ATCGTGCGGGAGCCTCTCCAGCCAGACGGCGTAGAACAACCGACGTCTCG
CGTGGCGTGAGTAGGGTGGCAGCGCCGACGATTAGTAGCAACCTTAAGAC
TAAGTCCGGACCAGCAGGCGTAAATGCGGCAGGCCGCAGCAGTGGGGGTG
GCAGCTCCAATTCCCATGCCAGGAGGCGGCGAGAAGGTGGTGGATCCTCA
TTTGTGCCGAAAGGCAAAGGGAACAATGACAACGAGCGCCGCAGCCGCTC
CGGAAAATTTGGACACAATCGGTTTGCAACCGACGGGGTTGCAGGCGGCT
GCGGCGGGGGCGACGGTAGCATCCGTCATCCCTCGAGTCAGAGGAAAGAG
TGTATATCGCGTGTGAAGCGAGAGAGGGCCGGTGGAGCTAGGGCGCCAGC
CGCAGTGGTGGTGGCATCCATGGCAGCGCCCGATGAGCGGTCTGAGCGGA
ATGAAGAAGAGGCGATATCAACTTCCGCAGGTCGACAACAAGCAACAAGC
TGCGGCGACAGTGGCGGTGGCGATGAAGAAAGCAAGCGCGCAGACCACCA
TCGCCAAGACTTGAAAGTGGAAGAGAAGGATAGCAGGAACTATAGAGATA
GTACTGTAGTGGACGAGAGTGTCGGGAGAGGAACGGATCGAGCGGAGCAT
GGCCGTGGCAGAGGTGGTGGCGACAGGAAGGATACTGGCAAGGATCGAAG
ATCTGGCAGGTACGACAACGCAGACATGCTTGGGTAAACACTTGAGTATG
GAAGCATCGGTAAAGGTTTTTGCCTCAGCCTTCTGGGGGCTAAAAAAACA
AACAAAAAAACAAGAAGGTACGACAACGCTATTGCGCTGTGTGATGTCGC
TTTTTTTCCTACTGCCAATATTGATTGTTCGCTGCCCACGCTACGTGTAT
ACAGGGTTCTTTTTACCGCGGGTCTGTACAGTTCACGACGTAATCTGTAC
AAGCGTTGACCGCAGAAACTTGTGGGACACCCAACAGAGGAATAATTGCG
AATGCCTGGATATACACCCCGTATAGCTTTGGACAGTGCTGATGGATTCC
GTATTCGCACTTGCAGCAAACATGTGCTGTGTAAGTATCAGGGACGTAGA
TTGGGTTGGTGTCGAGAAGGGAGCTCTTCTTTAGCGTGTGGTTGACTATT
TGGAATTATACCTATGCTATCTAGCTAGATTTTGCAGTGATAGCAACGGA
AAGCCCTCTCATTCTTCGAAAACCCCACGTTAGCGTTGATACAGGTAGGT
CATGCTTTCGTTTGTATATGGTAACTTGGCGGCGATCTGAAAAATAAAAC
GTTGCAGAGAATAATTTGTTGATACCACGTATTCTGCCAGTCTATCTCAA
CAATGTTTGATGCCCATATGCCCCTACATTCCGTTGCGAAGTCCGAACGT
TTCCGGCACCAGGCTGCTCGAACACCACTCCTCGTTCCGACCCTCAACGC
CACGGGAAGCAGAAGTTAGGCGGAACGGGGAGGTGCGGTCGCACGGCAGA
GGTGGAGTCAGCAGTAGCGCCGATAACACAGACGGTAACAACAGTGGCCG
CCGGAACGACGACGACATCGACAAAGACGGTGGCGTCGGCGCCGGTAACA
GCGATTCATACTATGATAGCGAGGATCATATGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig615:2387..4121-

>mRNA_H-paniculata_contig615.13859.1 ID=mRNA_H-paniculata_contig615.13859.1|Name=mRNA_H-paniculata_contig615.13859.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig615:2387..4121- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCGCCCGATGAGCGGTCTGAGCGGAATGAAGAAGAGGCGATATC
AACTTCCGCAGGTCGACAACAAGCAACAAGCTGCGGCGACAGTGGCGGTG
GCGATGAAGAAAGCAAGCGCGCAGACCACCATCGCCAAGACTTGAAAGTG
GAAGAGAAGGATAGCAGGAACTATAGAGATAGTACTGTAGTGGACGAGAG
TGTCGGGAGAGGAACGGATCGAGCGGAGCATGGCCGTGGCAGAGGTGGTG
GCGACAGGAAGGATACTGGCAAGGATCGAAGATCTGGCAGATGGCAGCGC
CCGATGAGCGGTCTGAGCGGAATGAAGAAGAGGCGATATCAACTTCCGCA
GGTCGACAACAAGCAACAAGCTGCGGCGACAGTGGCGGTGGCGATGAAGA
AAGCAAGCGCGCAGACCACCATCGCCAAGACTTGAAAGTGGAAGAGAAGG
ATAGCAGGAACTATAGAGATAGTACTGTAGTGGACGAGAGTGTCGGGAGA
GGAACGGATCGAGCGGAGCATGGCCGTGGCAGAGGTGGTGGCGACAGGAA
GGATACTGGCAAGGATCGAAGATCTGGCAGTCCGAACGTTTCCGGCACCA
GGCTGCTCGAACACCACTCCTCGTTCCGACCCTCAACGCCACGGGAAGCA
GAAGTTAGGCGGAACGGGGAGGTGCGGTCGCACGGCAGAGGTGGAGTCAG
CAGTAGCGCCGATAACACAGACGGTAACAACAGTGGCCGCCGGAACGACG
ACGACATCGACAAAGACGGTGGCGTCGGCGCCGGTAACAGCGATTCATAC
TATGATAGCGAGGATCATATGGAGTCCGAACGTTTCCGGCACCAGGCTGC
TCGAACACCACTCCTCGTTCCGACCCTCAACGCCACGGGAAGCAGAAGTT
AGGCGGAACGGGGAGGTGCGGTCGCACGGCAGAGGTGGAGTCAGCAGTAG
CGCCGATAACACAGACGGTAACAACAGTGGCCGCCGGAACGACGACGACA
TCGACAAAGACGGTGGCGTCGGCGCCGGTAACAGCGATTCATACTATGAT
AGCGAGGATCATATGGAG
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