mRNA_H-paniculata_contig6146.13855.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6146.13855.1
Unique NamemRNA_H-paniculata_contig6146.13855.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 4.710e-104
Identity = 155/188 (82.45%), Postives = 172/188 (91.49%), Query Frame = 3 
Query:  180 VQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLSS 743
            V+SGTYDFEANKALLKLYQFFPDLC+PE VAL+LAKALMN PSTDFMALMYIVPP++HR EPV SLKR ADSLETA+FVDFWQTCA+GDMP LIE+VPGF KH+RVFIVHTLATTFQ   RQN+EQCLDLDGAEL +F+ AN+DVV+ +P G +FKF LNEFNQIQPKKFKESVEFDKILKTI+KLSS
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 194
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.830e-68
Identity = 120/224 (53.57%), Postives = 148/224 (66.07%), Query Frame = 3 
Query:   69 LEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLS 740
            ++ M  PA + A+RPVVEHEYFDHR VPQLE YL EQ  SGTYDFEANKALLKLYQFFPDL K ++VAL   KALM  P+ DF AL Y+ P +   +EP++SL R  D+LE A++  FW    E +   LI+ +PGF    R   +  LA TFQSV    LE+ + L GAELEAF+      V +  G   F    NEFNQ+QPK+FKESVEF+K+LK +  LS
Sbjct:    2 VQPMQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQASSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLGDGRAAFA--RNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
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BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.100e-50
Identity = 98/224 (43.75%), Postives = 144/224 (64.29%), Query Frame = 3 
Query:   78 MDFPASYEALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAAN-SDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLSSA 746
            M  PASYE +  +++ + F+  ++ +L+ YLDEQ+ + TYDF ANKALLKLY F+PD    + +AL L KALM  PSTD M L+Y+VP S    EPV++L R A  LETA+FV+FW+    G    L++ V GF + IR +++  L+ TFQ V  +     L LD  +LE +++AN SD +++   G+   F  N  NQ +PKKFKE++ FD++L  I+ L+S+
Sbjct:    1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQIATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSDKLSIE--GKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFLASS 221
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BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.710e-42
Identity = 90/225 (40.00%), Postives = 135/225 (60.00%), Query Frame = 3 
Query:   75 QMDFPASYEALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNL---NEFNQIQPKKFKESVEFDKILKTIEKLS 740
            +M+ P S +++   +  +      +  L+EYL+EQVQ+ TYDF ANK L+KLYQF+P+      +AL + K++M  PSTD   L+Y+VP ++   EP+ +L R AD LETA+FV+FW+    G    L++ +PGF + IR F++  L+ TFQ +  +     L LD   LE FIA  +D + +    +E KF +   N  NQ +PKKFKE++ FD +L  I  LS
Sbjct:    5 EMEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTDTYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCL----EEKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
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BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.350e-38
Identity = 84/215 (39.07%), Postives = 124/215 (57.67%), Query Frame = 3 
Query:   99 EALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLSS 743
            E++   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP      +VAL+L KALM  PSTD   L+Y+VP +V   EP+ +L R  + LET +FV+FW+    G    L++ + GF + +R +++  L  TFQS+  +     + L    L  ++   SDV+ +   G++  F  N  NQ QPK FKE++ FD +   +  L+S
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRLE--GKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLTS 223
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.280e-31
Identity = 77/220 (35.00%), Postives = 123/220 (55.91%), Query Frame = 3 
Query:   87 PASYEALRP-VVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLSS 743
            P+SY ++   V+    +    V  LEEYL  QV+ G+YDFEANK+LLKLY  +P L   E V  +L KAL+N P+TDF  L+YI+P  +   E V ++K  A++LETA++ DFW          +   +P +   IR  I+   A T+++V + ++   + L G EL++F+ AN+  +          F  N+ NQ   +K+KE V+   +L  + +L++
Sbjct:   44 PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.490e-29
Identity = 64/146 (43.84%), Postives = 91/146 (62.33%), Query Frame = 3 
Query:   99 EALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSV 536
            E++   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP      +VAL+L KALM  PSTD   L+Y+VP +V   EP+ +L R  + LET +FV+FW+    G    L++ + GF + +R +++  L  TFQS+
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSL 156
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: L8GVU4_ACACA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVU4_ACACA)

HSP 1 Score: 122 bits (306), Expect = 1.490e-28
Identity = 74/206 (35.92%), Postives = 112/206 (54.37%), Query Frame = 3 
Query:  144 AVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPP-LIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIA------ANSDVVTMAPGGQEFKFNLNEFNQIQPKKFKESVEFDKILKTIEKLS 740
            ++PQL+ YL EQ+   +YDFEAN ALLK++QF P     ++V  +L KALMN P  DF   +Y++P + H++E V++LK+ ++ LETAQF  FW    E      L++  PGF + I+ F V  L   +QSV    L   + L+GA L+ F+A         D+VT+          + E NQ +  K  E ++  K+      L+
Sbjct:   22 SLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPEAAHQNEGVAALKKVSNLLETAQFTGFWTLFEEDSATSVLLKNFPGFREAIQSFAVSVLTVAYQSVPVDVLASAVHLNGAALDEFVAKQEGWKTEDDLVTLP---------VTELNQARQIKTTEQLDRKKVANIFSVLT 218
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A1X6NQY4_PORUM (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM)

HSP 1 Score: 122 bits (305), Expect = 2.520e-28
Identity = 66/168 (39.29%), Postives = 104/168 (61.90%), Query Frame = 3 
Query:  114 VVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDLDGAELEAFIAANSDVV 617
            +++ + +D   +P LEEY+++QV +GT D  AN A LKLYQF+P   K  +V+ +L KA+M  PSTDF+  MY++P +    EP+ +L + A  LET +F DFW   A G +  L++ VPGF + +R F++  +  T++ V R  L + L L+G +  A  AA  +V+
Sbjct:   17 LLQSQRYDPDILPTLEEYVEQQVATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWP--ATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVI 182
[Close]
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Match: A0A7S4N835_9EUKA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4N835_9EUKA)

HSP 1 Score: 120 bits (302), Expect = 7.000e-28
Identity = 79/209 (37.80%), Postives = 109/209 (52.15%), Query Frame = 3 
Query:   63 MPLEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEANKALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSEPVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHTLATTFQSVARQNLEQCLDL-DGAELEAFIAANSDVVTMAPGGQEFKFNLNEFNQIQPKK 686
            MPL+     A  E  R       +D   +PQLEEY++ Q  S TY+ + N A LKLYQF  +   PEIVA +L KALMN P+TD++  MY+VP SV   E + ++   A  LE   F   W +   G +  L+  VPGF   IR F++ TL  T+Q+V   + ++ L L D A L+A +AA          G     + N  N  +PKK
Sbjct:   13 MPLDATSGAALLEKSR-------YDPEILPQLEEYVNTQCASNTYNLDCNLATLKLYQFHTEKSNPEIVAKILVKALMNLPNTDYLLCMYLVPESVQELEQIKNISAVAQLLEGCSFRAVWGSL--GSLSELLAAVPGFDDAIREFMLTTLQITYQAVPDAHAKESLGLKDDAALQALVAAKG----WTREGGAIHISPNPDNTAKPKK 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6146.13855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF51_ECTSI4.710e-10482.45Eukaryotic translation initiation factor 3 k subun... [more]
A0A835Z1S6_9STRA4.830e-6853.57Eukaryotic translation initiation factor 3 k subun... [more]
A0A7S2FZN4_9STRA7.100e-5043.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2H0N4_9STRA1.710e-4240.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WSD7_9STRA1.350e-3839.07Eukaryotic translation initiation factor 3 subunit... [more]
W7U338_9STRA1.280e-3135.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SPG3_9STRA3.490e-2943.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L8GVU4_ACACA1.490e-2835.92Eukaryotic translation initiation factor 3 subunit... [more]
A0A1X6NQY4_PORUM2.520e-2839.29Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4N835_9EUKA7.000e-2837.80Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6146contigH-paniculata_contig6146:5608..12088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.6
Seed ortholog evalue9.4e-84
Seed eggNOG ortholog2880.D8LF51
Preferred nameEIF3K
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.ribosome binding
EggNOG OGsKOG3252@1,KOG3252@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Exons6
Model size1475
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6146.13855.1prot_H-paniculata_contig6146.13855.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6146 5670..11362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.5387673-UTR-H-paniculata_contig6146:5607..56691622930692.5387673-UTR-H-paniculata_contig6146:5607..5669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 5608..5669 +
1691481408.795454-UTR-H-paniculata_contig6146:5607..56691691481408.795454-UTR-H-paniculata_contig6146:5607..5669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 5608..5669 +
1622930692.6517863-UTR-H-paniculata_contig6146:11362..120881622930692.6517863-UTR-H-paniculata_contig6146:11362..12088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 11363..12088 +
1691481408.8518703-UTR-H-paniculata_contig6146:11362..120881691481408.8518703-UTR-H-paniculata_contig6146:11362..12088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 11363..12088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.5567532-CDS-H-paniculata_contig6146:5669..57861622930692.5567532-CDS-H-paniculata_contig6146:5669..5786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 5670..5786 +
1691481408.8055565-CDS-H-paniculata_contig6146:5669..57861691481408.8055565-CDS-H-paniculata_contig6146:5669..5786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 5670..5786 +
1622930692.572204-CDS-H-paniculata_contig6146:6553..66611622930692.572204-CDS-H-paniculata_contig6146:6553..6661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 6554..6661 +
1691481408.8134575-CDS-H-paniculata_contig6146:6553..66611691481408.8134575-CDS-H-paniculata_contig6146:6553..6661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 6554..6661 +
1622930692.5838416-CDS-H-paniculata_contig6146:7477..76181622930692.5838416-CDS-H-paniculata_contig6146:7477..7618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 7478..7618 +
1691481408.8216023-CDS-H-paniculata_contig6146:7477..76181691481408.8216023-CDS-H-paniculata_contig6146:7477..7618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 7478..7618 +
1622930692.599562-CDS-H-paniculata_contig6146:9321..94621622930692.599562-CDS-H-paniculata_contig6146:9321..9462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 9322..9462 +
1691481408.8293202-CDS-H-paniculata_contig6146:9321..94621691481408.8293202-CDS-H-paniculata_contig6146:9321..9462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 9322..9462 +
1622930692.619963-CDS-H-paniculata_contig6146:10405..104771622930692.619963-CDS-H-paniculata_contig6146:10405..10477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 10406..10477 +
1691481408.8369064-CDS-H-paniculata_contig6146:10405..104771691481408.8369064-CDS-H-paniculata_contig6146:10405..10477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 10406..10477 +
1622930692.636091-CDS-H-paniculata_contig6146:11254..113621622930692.636091-CDS-H-paniculata_contig6146:11254..11362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 11255..11362 +
1691481408.844402-CDS-H-paniculata_contig6146:11254..113621691481408.844402-CDS-H-paniculata_contig6146:11254..11362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 11255..11362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6146.13855.1

>prot_H-paniculata_contig6146.13855.1 ID=prot_H-paniculata_contig6146.13855.1|Name=mRNA_H-paniculata_contig6146.13855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
MPLEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLDEQVQSGTYDFEAN
KALLKLYQFFPDLCKPEIVALMLAKALMNAPSTDFMALMYIVPPSVHRSE
PVSSLKRGADSLETAQFVDFWQTCAEGDMPPLIETVPGFTKHIRVFIVHT
LATTFQSVARQNLEQCLDLDGAELEAFIAANSDVVTMAPGGQEFKFNLNE
FNQIQPKKFKESVEFDKILKTIEKLSSA*
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mRNA from alignment at H-paniculata_contig6146:5608..12088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6146.13855.1 ID=mRNA_H-paniculata_contig6146.13855.1|Name=mRNA_H-paniculata_contig6146.13855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6481bp|location=Sequence derived from alignment at H-paniculata_contig6146:5608..12088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCCGCAGATCAATAGGAGTCACGAAGCAAGGGAGGGGTTGAATTGTAT
TCGAAATAAATCATGCCGCTGGAGCAAATGGATTTCCCCGCGTCATACGA
GGCTCTGAGGCCTGTCGTGGAGCATGAGTATTTCGACCACAGGGCAGTAC
CCCAACTGGAGGAGTATCTTGATGAACAGGTATTAATAGACTAATCTTGT
ATCTTTGTGTTTTTATGTGGCACAGGCAGTTGCACTGAGTTTCTGGTGTA
AAAGGTAGGACATTCGGAAGGCAGTCAGGGTCCAAATCTGGTTAGGATTA
GCGTAGTCATGTTCTAGCGAGACACACCAAAGCACCAAGAGCTACAGTCA
TAGCGGTGAATCTTCTACTTGCAGCACTTGTCTGCACTGACTGTACTATT
AGACTACGTGAGCTCCAAAGGATTTGTGCAAAATATCGTTCTGGCATATG
ACAATTCGCCTGTCCGTGTTCACCTCGCTCTCGAGGTGGGAGACGGGCTC
CTGCACAGCTGGGGCTTTCCAACGGGCTCCCCTCGAAGCTATTGCTATCT
CTATCTTTGTTGTCTTTCAAAATCGATAGCCCTTCCCAGTTGTTTTGGTG
TTCTGTGACCTGCGAGATCTGTTATACAATCGATTTTCCACTGCTGTTGC
GAACTATCAATTTTCCATTGGTATTCCGCCATCATCGTCAAAACAATTAG
CATTGATCAGATTTTACGAGGGATATTCAAGCACATAGTCAAGCGTACAC
TGCATCCATTTCGACCTGAACTGATTTTTGCACGGAAATGCCCGATTTCA
TGTTCACCCGGGGGGCGGGGCGCAGTTGCATATAGATCTGAGGTCGCCCA
AGTATTTCCCCGCTTTTCAGTAGTTCAGGTGTAAGTCGCTGTGCTGATGT
TGATTGCCTGGCGAATGGGTTGTCGTACTACTGTTGGTTGTCACAGGTGC
AGTCGGGGACGTATGATTTCGAGGCAAACAAGGCTTTGCTCAAGCTTTAC
CAGTTTTTCCCGGATCTCTGCAAGCCCGAGATCGTGGCACTCATGCTCGC
AAAGGTGACTGATGTTCTTCCCTTCTTCCCCTTCCTTCCTTGGTTTAGTC
TTTTCGTGGTTGAACAGTGCGTTCAGCGTGTTGAAGATAAACCTGTCACG
CTTCGAAAATGGGTTTCATTGTTTGGTGGTATGGCAATTACCACGGTACC
ACGGTCATCTCTATTTTGCATCAAAGGCAGGTTTCGCTCATGCCTTCCAA
ACCTGTGTCTCATGCCATCCTCGCCCACCTGCCATGAGGTGGTGATCTTA
TCGTCCATAGCTTGCCAAGAGTACTTTCACTCCAGTACAGCGGTTGGACA
TTCCGTCTTTTTTGTTGTTGTAAAGGTTACCTACTCACGATGATTCGCAA
CTAGACAGGGTTCGTAGCCAGTGTGCAAATGTAGCCCGATTCTTGGTTCT
GTGTACATAGCACGTGGAATTGTCACATTTTGTCATCCGGCATGCCCAGG
TGCTTCCCAAGAGGATAAGAGTGCGGTGTCTGGCTAAAAACCTAGCACTC
ATGGAATCCACCACTGGTGTATGATGCAAAAAGTAGAAGTAGTATCCGAT
AGATTGATGCACCATGTTTGAAATTTTTTCCCGTCTACTGCCGACCACGT
AAGTAGCAAACATTTGCTGACTCCGTCGCTGTATATATTTTTTTTATGTG
GCATTGTTGTGGTCGTTCAACCTGGCGTTAACTACACTATTTTCGACACC
AAGATCTACCGGTTAGACCCGGTGGTCAGGAAGGCTGGACATGTACTTGT
ATGTTGCGGTTCATTGCACCATAATGTGTCACATACACAAGTGTACGTCA
TTATCCGAAATCCCGCACAGGCACTAATGAACGCACCAAGCACGGACTTC
ATGGCTTTGATGTACATCGTTCCGCCTTCGGTACACCGGAGCGAGCCCGT
GAGCTCGCTCAAACGCGGAGCAGATTCGTTGGAAACGGCTCAGTTTGTCG
ACTTTTGGCAGGTATGTAACGTGTGTATGTATGCCTATTTCATGTTACGC
TGATGATGGTAGTGATTGTTTCGGAACTTGCTAGAAGAAAATCTTCACGG
GAATCGTATTTATCTATCCATTCCGTAGGCAATTTTTAAGATACATTCGT
AGAGCATGGGTATGGACTCTCGATGCCTTTCACTGAGGCCGGGGGGGGGG
GCAACTTGGTGAATGTTTTGTCAGTACCAGTCGACTGGTGGAGCAAGATT
CAAACTAATTCCAGTCATCACTTTTTGCCAGTTAACTGGCGACGAAGCCG
TTGCCCGCGCTCATGCCCCCCCCCCCCTCCGGCTGGCGAGGGGCCCCGCT
GGAAGCACCACTTATGAAGGAACAAGAGGCGATTTGGCTTTACATCACTT
CAAAAGTGTAAAGCTCTTCACCAACCGCACTTGGACTGGATGATTGATCC
ACAACAACCGCATAACTTGAAAAAAATGTAATTGTTTCAATCCCTTCGGG
GCGCAAAATAAGCGCGAATCAGCCACTGTTGCTTTTCAAGCGGGGAGCAA
AATGCCAACGAAATTCCAGCATGTGAAGTTTTCTGCATGGAAAAAAGTGG
CCAGAAATCAGATCCTTGAAATCAGATTTTCGAGGTGTGAGCCCTCCAAG
GGTCAACATAATTTCTACTTCGCAGTTTGTGTGTTGAGAAAGATTGCACC
AGCGGACGGCACGGATACTTGGTGGAAGGCAGGGGGGGGTAGAGCAGCAC
AGCACTTCGCGAGGGCATGAGAAACAACACCATGCGCCAGCAACAGAGAA
ATCATAGACGTTCCAGTTGCTCACGTGCCATGTGTCACTTGTTTCTTATT
TTGCAACACCTGTGATGTCTTGCCGAGAGTATCTTGGGGTAGTAAACTAG
TACAATGTGTGCAGACCCTACAGTCTGCATGGATGCTGCAGTTCCAAGCA
GAGTTCATGGAGTATGACACGTACAAGGGTGAATAGTTCGGAGTATGGAA
CATATCACGGCCAATATAACTGGTGAACTGAATTTTTTCCTAGTCAGTTT
ACCAGTTAAACTGGCAGTCAGTTCATAACTCTAGTATTTTTACTTGATAC
AGTTTGTGATTTGTAAAGTTGTCAGTTGATTCTCTACTGGAAGGTTTGAT
GTTGAACCGATGTGGGTCTATGCGTTTCCGTGAGCCCCATCCCTGCGTTA
GCTCGAACGCCTTTGAACGCCGTACCTTGGCTGCTCTGTTTTAAGGGCTA
CCTTCTACCACTGATTACTCCTGCACCTTCACGCTTCGGTTGTTACTATA
TTCACTATTCATTTTATCTGCGCCTAATCACCTTAACCCTTTCGGAACCA
GACCTCATGAGGACCAACAGGCGGTTTTCTTCACGAGCAATTCTCGATTA
TGACAACTACATCTACGGAACGTTTAACCAGCTCCAGACAGCTGGTCAGT
GAATCTCAGGCCGTGGAATTTTTTTTTTTCCTGCCGATAAAGGTCTCATT
CTCTTGGATTCAGCGTACATAAAGAGTGAAAACGGGCAAACACCAGGCTT
TTTCCATAGCGACTAAACGATAAGTATCTCCTACCCTTCTAATTCGAGGA
ATATTGGCTCCGAACGGGGTAACTGTCCGTTGTAATTGTTCCAAAGGCCG
CTGTAAGTGTAACCTCGCCGTACGTTTTCTTTTCCGCTTTCCTCTCCATT
GCTTGATCCTTCAGACGTGTGCGGAGGGAGACATGCCACCCTTGATAGAG
ACAGTGCCAGGGTTCACGAAGCACATCCGCGTGTTCATCGTGCACACTCT
GGCAACAACGTTCCAGTCGGTAGCAAGACAAAACCTCGAGCAGTGCCTCG
ACTTGGTGAGGAGCTAGCTGTATGAGCGTATTTCTTGTTTTGTTCTATTT
TGCGTATTGCATTATCTCTCACGACGAGCGATTTAACAAAAAAAAACGCC
TTACGTTTTTTGTTTCTGTCATGGCTGCACGCCACGTACATGTAAACCCA
TGTATCTTTCTTTGATATGAAAAGCCGTAAAGAAACAGTTTGAGTCGGTG
ATGAAACTGGTGTTTATCTATACCTCGACGTTTTTCATATCTTAGCGGAG
CACGAAGCTCTGCACCATTAATGCCTGTATAGTGTGAGTACTAACTCACT
TTTGTTTTTTTCCAAAATTCTGTTCGAGATGGTGTCGTGAGTACCGTAAG
TCATTCTCCATGTATCGTCTCCTCTACGCCTAAAGCTGGAGGTGCACAAG
GTTGATCATGTAGTTCATGAAAGTAGCCAAATGGATTTCTTGGTTGTGCG
TGTACGGATGTCGGCGCACACGGCTGCAACCCTGGTGACATAGAGCAAAT
GACGAGGAAGATTAGCCGCAGATCACAGCGGCTGGGGAACATTATACTGA
GCATTCCCCGTATGCAATTACCATATCTATGACTGTCCAACAGAGGATAT
GCCCAACCCTTCCGAACACGGTCATACTTGTGTAGAGCCCATCCGCGCGG
CCAGCCTTCTCCACGAAGTGCGCAGTAGAGTATTTGTTTTCCACTTCTTG
AAGCAAGGCGATGTTTGTTTTTGTTTTGTTCCATATGTGTGGCTTGTGTA
TCTGTGTAGGGATTGTCATTTTTGCTTTTTTTCGCGAGTTTTGATACCTG
TCGGGTTGAAGCCGTGAAGGTGTGCTTGCCATGCGAATCGTGGTGTTTAC
GGCACGGTTGTAATGCGATCGTAGTTGGTTTGTTCTGGTGCGTTGTCTGC
ACTTGCGTATCAACTCGATATGGTATATTTGTGTTTTGTTTCTTTCAGGA
TGGCGCGGAGCTCGAGGCGTTTATTGCGGCGAATTCAGATGTAGTCACGA
TGGCACCGGGAGGACAAGAGGTCAGTTCGACTACCACTCTCACTCTATAC
CCTTTCACTAGAGCGCAAAAAAATGCCTCATGCAGACATCAACGTCTGAC
TCGTGAAGCACTTCCAGCAAATTCGATGGTACTGTTCTTGTTCTGTCGTT
GAACTTTTGCACGCAACGCGTTTATTTCGTCGGGGTTTAACCTGACTACT
ATGCTACAATTTGCATATGTGGAGTGTGCAGTCTTGTTGAAGCGTCTCCA
TGTCAGGTGTCATATAGAAATATTGACCGAAAAAGGGATGCATAAGTAGT
CGAGGGTAGGTTGTTCTGGTTGAACACACGTCCTCAGGAGAGAATTCGAA
TACTAACATCCCTGTAAAAGCCGCAGGTGCTTTGGTTCATCACGGCGAAA
GAACTGCGAGCATGGTCAAGGTGTTGTGGAGAGAAAATTTGCAGGCAGAC
GGGACTTTCCCACGACTGGAGGGATCGATGCGCCCTATACAGAGAAAACA
CAAGAAAATGTCTTGAATGTATATCCCGCTCCATAAACGACCTGCATCAG
GGAAATTGATCAGGAACAGGGATATGTAGTCGAAGATAGGTTGTTCGTTG
CAAATAAACGTCCTCATGCCGAGCAACTTGCAAGAACCATCAAGAGTTCA
AACACCAACACGGATGCGAAAGTTGCCGGTGTTTTGGCTCACTACAGCGC
CATGACGTTCCCCTTGGTAATGCGCGTATTATCTTGTTGACCGATTTTCT
CTGATTTTTCCCTGCGCGTGCTCTTTTTCCCCCTTACGCGTTTGCAGTTC
AAGTTTAACTTGAACGAGTTCAACCAGATTCAGCCCAAGAAATTCAAGGA
ATCGGTGGAATTCGACAAGATTCTCAAAACAATCGAGAAGCTCTCGAGCG
CTTAGATTTTCTAGGTCCGTCCGTCGTATATAGCGGAATATAATAGTGAG
TATCACGGTATGTTTGACCTTTGGCGGTGCTGCTGGACCCACGTAACGGA
GAAGGCACGAAGAGGCGGCAAGGATAAGTGCTGCTAACGTGAACAACAGC
GCGGCCACGGTGTTGGTGATTTTTGCTCTCATGTCACCGGCGGAGTTCGT
CGTTGTTCAATATAGTTGCCTTAACGGAGTGATTATGCCGGCAATACGAT
TTTGTTGTGCGACATAGTTGATGTTCAGGACGTGTGGAACGAAATTGCAG
GTTTTGCATGCTCCCCCGTCTTGGAGTCCGCCGCAGTACATGATCATTTG
TATACATTTTCATGTTGATAATGGGTGTCAGATTAAGGACGTCTAGTTGT
TACCTTGGGCATGTAAAGCGCTCTCTTATTTTTTGCATCGAGGAAATACT
GCAGTATAGGCGTCGTTCCGAGTGGCTTTAACTGACGACCGCGTAGCTGG
TAGTCCCATACCCCGTGATGGAAGTGGATGAGATTTTTTGGCATTTGATT
TGTTCGCACACAGGGCACGGCGAGCAAGGAAAGAGCTGGGTAAACTCGGA
AAGAATGCTCACTTTGTGAACGGCATTTGCGTTCCCCAATCGTTGTCAGC
GCTCCTGCCGCGAAAAAAGCGACAACAAAAAAAGCGATTTATAATCCGCC
ACATCACCGCCAAAAATACGACCAATATCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig6146:5608..12088+

>mRNA_H-paniculata_contig6146.13855.1 ID=mRNA_H-paniculata_contig6146.13855.1|Name=mRNA_H-paniculata_contig6146.13855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig6146:5608..12088+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCTGGAGCAAATGGATTTCCCCGCGTCATACGAGGCTCTGAGGCC
TGTCGTGGAGCATGAGTATTTCGACCACAGGGCAGTACCCCAACTGGAGG
AGTATCTTGATGAACAGATGCCGCTGGAGCAAATGGATTTCCCCGCGTCA
TACGAGGCTCTGAGGCCTGTCGTGGAGCATGAGTATTTCGACCACAGGGC
AGTACCCCAACTGGAGGAGTATCTTGATGAACAGGTGCAGTCGGGGACGT
ATGATTTCGAGGCAAACAAGGCTTTGCTCAAGCTTTACCAGTTTTTCCCG
GATCTCTGCAAGCCCGAGATCGTGGCACTCATGCTCGCAAAGGTGCAGTC
GGGGACGTATGATTTCGAGGCAAACAAGGCTTTGCTCAAGCTTTACCAGT
TTTTCCCGGATCTCTGCAAGCCCGAGATCGTGGCACTCATGCTCGCAAAG
GCACTAATGAACGCACCAAGCACGGACTTCATGGCTTTGATGTACATCGT
TCCGCCTTCGGTACACCGGAGCGAGCCCGTGAGCTCGCTCAAACGCGGAG
CAGATTCGTTGGAAACGGCTCAGTTTGTCGACTTTTGGCAGGCACTAATG
AACGCACCAAGCACGGACTTCATGGCTTTGATGTACATCGTTCCGCCTTC
GGTACACCGGAGCGAGCCCGTGAGCTCGCTCAAACGCGGAGCAGATTCGT
TGGAAACGGCTCAGTTTGTCGACTTTTGGCAGACGTGTGCGGAGGGAGAC
ATGCCACCCTTGATAGAGACAGTGCCAGGGTTCACGAAGCACATCCGCGT
GTTCATCGTGCACACTCTGGCAACAACGTTCCAGTCGGTAGCAAGACAAA
ACCTCGAGCAGTGCCTCGACTTGACGTGTGCGGAGGGAGACATGCCACCC
TTGATAGAGACAGTGCCAGGGTTCACGAAGCACATCCGCGTGTTCATCGT
GCACACTCTGGCAACAACGTTCCAGTCGGTAGCAAGACAAAACCTCGAGC
AGTGCCTCGACTTGGATGGCGCGGAGCTCGAGGCGTTTATTGCGGCGAAT
TCAGATGTAGTCACGATGGCACCGGGAGGACAAGAGGATGGCGCGGAGCT
CGAGGCGTTTATTGCGGCGAATTCAGATGTAGTCACGATGGCACCGGGAG
GACAAGAGTTCAAGTTTAACTTGAACGAGTTCAACCAGATTCAGCCCAAG
AAATTCAAGGAATCGGTGGAATTCGACAAGATTCTCAAAACAATCGAGAA
GCTCTCGAGCGCTTAGTTCAAGTTTAACTTGAACGAGTTCAACCAGATTC
AGCCCAAGAAATTCAAGGAATCGGTGGAATTCGACAAGATTCTCAAAACA
ATCGAGAAGCTCTCGAGCGCTTAG
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