mRNA_H-paniculata_contig6146.13854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6146.13854.1
Unique NamemRNA_H-paniculata_contig6146.13854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6146.13854.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 5.190e-5
Identity = 26/37 (70.27%), Postives = 27/37 (72.97%), Query Frame = 2 
Query: 1658 MRNAASALPFVVGEEVQSYPEKHEPTFWRLHKGTKRV 1768
            M NAAS LPFVVGEEV SYPE  E   WR+H GTKR 
Sbjct:    1 MGNAASGLPFVVGEEVDSYPESPETCSWRMHSGTKRT 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6146.13854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G248_ECTSI5.190e-570.27Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6146contigH-paniculata_contig6146:1005..4707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001730.1
Exons3
Model size2034
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6146.13854.1prot_H-paniculata_contig6146.13854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6146 2401..4492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.441703-UTR-H-paniculata_contig6146:1004..24001622930692.441703-UTR-H-paniculata_contig6146:1004..2400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 1005..2400 -
1691481408.7462769-UTR-H-paniculata_contig6146:1004..24001691481408.7462769-UTR-H-paniculata_contig6146:1004..2400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 1005..2400 -
1622930692.5001485-UTR-H-paniculata_contig6146:4492..47071622930692.5001485-UTR-H-paniculata_contig6146:4492..4707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 4493..4707 -
1691481408.7830517-UTR-H-paniculata_contig6146:4492..47071691481408.7830517-UTR-H-paniculata_contig6146:4492..4707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6146 4493..4707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.4580152-CDS-H-paniculata_contig6146:2400..25501622930692.4580152-CDS-H-paniculata_contig6146:2400..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 2401..2550 -
1691481408.754862-CDS-H-paniculata_contig6146:2400..25501691481408.754862-CDS-H-paniculata_contig6146:2400..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 2401..2550 -
1622930692.4703631-CDS-H-paniculata_contig6146:3912..40941622930692.4703631-CDS-H-paniculata_contig6146:3912..4094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 3913..4094 -
1691481408.7623017-CDS-H-paniculata_contig6146:3912..40941691481408.7623017-CDS-H-paniculata_contig6146:3912..4094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 3913..4094 -
1622930692.482721-CDS-H-paniculata_contig6146:4401..44921622930692.482721-CDS-H-paniculata_contig6146:4401..4492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 4402..4492 -
1691481408.770834-CDS-H-paniculata_contig6146:4401..44921691481408.770834-CDS-H-paniculata_contig6146:4401..4492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6146 4402..4492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6146.13854.1

>prot_H-paniculata_contig6146.13854.1 ID=prot_H-paniculata_contig6146.13854.1|Name=mRNA_H-paniculata_contig6146.13854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MHMSSGRAVVVAAIATVVRPGQSFLMSPALGGHVERNVRCMMFSTRIPSC
ANAATAAFEIDTAERRAERLWQLSDAEKPALGERPDTGLVQEVAARLRYS
RNSDHTDDFVEEAELSALRRYHYGGLEEGDEGEDDREYYI*
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mRNA from alignment at H-paniculata_contig6146:1005..4707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6146.13854.1 ID=mRNA_H-paniculata_contig6146.13854.1|Name=mRNA_H-paniculata_contig6146.13854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3703bp|location=Sequence derived from alignment at H-paniculata_contig6146:1005..4707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAAGATTACTTGGACTGTTGCCAACGGTTGAAGTGCTATCGGTTGGA
TACATACTTACATCTCGAGCAGCAGAGCATCCAATAGACGCGTGAGAAGA
GAAATCTGTAGTCCAGCCATCGCCATAGAAAAAATTTCAACACACAACCG
GATTCTCGTATTTCTTAGCTGTTAGCAGCTTGCGACAGAGGGAAGACGGC
AGGGCTTGTACAAATATGCACATGAGCAGCGGACGGGCAGTCGTGGTAGC
AGCCATCGCTACTGTAGTGCGACCAGGACAAAGTTTCCTCATGTCGCCAG
CACTAGGTGAGTAAAGGAAATACGCAAGTAGTGACGAATGATGAGCTCTG
TTGCCCCTACGCTGGGACTACAATCAATCTGTTTTGCAGTTGAGGGTGAA
CAGAATCTTGCCAACGTCACAGAGCCACATGATCTGCGTACACCCTTTAC
TCCGCCAGCGCGACCATTCCTCACCCTGAAATACACGGTGTGCTCCCCGA
CAACAATGCATACCCCAAAGTGGTGACCGTGCCACTCACGTGGTTCCGCT
ATTTTCCCCCACGTTCATCTGCTCTATTTGTTGTCCGTTTTTTCCATTGT
CATCGATTTTCAGGCGGCCACGTGGAACGGAACGTGCGGTGCATGATGTT
CAGCACCCGCATTCCATCGTGCGCAAACGCAGCCACCGCAGCCTTTGAAA
TAGACACGGCAGAGCGTAGGGCGGAGAGGTTGTGGCAGCTTAGCGACGCT
GAGAAGCCTGCGTTGGGAGAGCGTCCGGATACGGGCCTGGTCCAAGTAAG
CTGTATATGTGCTGAGTACAACTCTGTGTCAGACCGGAATGACTGTATGC
TGTTGCTGCATGCACGTCGCAACCGGCTTTATTTGTCAAAACTATCCAAG
TACTGAATTCAATTCCAGGGTGTAAGTTAGTCATCGGAATGTGCTGCAGC
CCCGACCTACGTCGAGCTTTGCATGGTAAGGAGGAACCACAATCGATTAC
CGTGCTATCAAGCGGGCATACTCCGGGAGTTCGGGCTTGTTATGAACTTT
TAAATGATTGGTTTTTCCTCGCCTCTGTTCCGTGAGTCTGCCCTAAAACG
ATATTTTGTTAATATATTTTGCAATTTGGAGTTTTGTGCAAAAATGAAGT
ATACCATTCGAAAGCCTACGCGTTCAGCTTTCATGTTGATGTCTTTGAAA
AAGAAAATTAATTCGAAATGGTTGATAACCGGGTATCTCAACACGTTCAT
GTTTTTTCGTAAATGGCGGATTTTGTTCAAACAGCCGAATAGTCCGAAAT
CGACTGAAAATCAGGTTCATGGCTGATCAAGTTTTGAGTAAACCTTCGAT
TAAGAAAGGATTCACCCCCCCCCGCCCCCCCCTCCAGACAAGCACGAATA
CTTGCAAAAACAAATGATTACAAACTGAACATATTTGCCTGACTTTCATA
ATGGGCGGACACCTAAAATCAAGCACCCACACATGTCCATCGATTTACGA
GTTTTTGTTAGCAGTCGTGGATGGTCCGTAGCACATATAATACACCAGCT
CATTCTGAAACTCAGGCGAATACTTTATGTTTTTTGCGAAAACCACTTGC
AAGTATTCGTACTTTTCCGAGGGGTGAAAATTTTCACCTCCTGGACAAAT
ACGAAGAATTCGGGGTATTCGCCACGAAAAATAATGATTCGCCCAAGTTT
CAGACTGAGCTCGTATATATTATGTGCCCTAGACTCCTAATAATAGTCGT
AAATCGAACGAACAGGGATGGGTACTTTATTTCATGTGTCCATTCATTCT
GAAACTCAGGTGGGTATTTGTTCATTGTCGTGGCGAATACGCTAATTATT
CGTATTTGTCTGGGTGAATGTATGTTGTGTTGTTCCCCTTGGCGTTTCAT
ACTATGTAGTACTATAAATTCTTTGTTCAATCGAAGGCCGCGTTGTAAAC
GGCTCTGTCAATCGGGACTAAGTCCCTCACCTGTAGTCAAATATGTAGTA
TGGATCCAGGCACAGTGTGATACACTCATCGACAGAGGCAAGCCATTTCA
CTCATTGTCGCGAAACCTGAGAGTCGTAACTCCCGCAGTATTCACTATTT
GTGTCAGCTACCCTGTGTTTGATTTGCCTAACCCAATAATGCATGTGCTG
CACGCAGGAGGTTGCGGCTAGACTGCGGTATTCACGAAATTCTGATCACA
CAGACGACTTCGTGGAGGAAGCGGAGCTGTCTGCGCTGCGGCGATATCAC
TACGGTGGTCTGGAGGAGGGAGACGAAGGAGAGGATGACCGGGAGTACTA
CATCTAGATGGCTAATTGTCATGTACGGGTCCTCCTGTCAACATACAGTG
TTGTCAAAATCACAAAAGAACAAGTGCAAAAAACATAACCTACATCTACC
TCCCACCGCCCAACGTTATAACCCGTTGCGTCGTTTTCAAACGCGACGTA
AAGATGTCATAATCTTGTCCTCGTAAACCGACGGTAGCGTAGCATTCAAT
ATTTAGGCCAATGAGTCCCGGCGGGGAACGCTTGGAGGGAGATGGATCAG
GGGTTGGTTGACTATGCCATCATTGAGCCTTCCTTTCTCCCATGGCGCTG
TAATTGGGGGTAGTTGCCCGACCAGAGGACGAAAAACTGCGAGTGTGGAT
AAAATCTGGCATGGAATGCGTACTAGGAATTGAACATGGTCAACGTATAT
TGCTACCGGTAGATCCGACGCGATCGGGGCTGTGGCTTTGCCTACAGCGT
ACCGTTTCCAAAAGAAAGATAAAGTACGGTACAGTAGGGCTGCAGAGCAC
TCACCGTTGGCGTGGGATTTTGTCCTCGATAGGTAGGACAATGTTGATGG
AGATTTGGAAGGGTTACAGAAACACAAACCAGGAACGGGGTTATTTGTTC
ACATGGGTTGGTTAATTCGGCGTGTACAAACCGATTGGAAATATGCCAAG
GGGGACGTTTTATTTCTTTCTGCTGCTTCTCAAGTTGTAGTCGCCTTGTC
CTTCAAGAGGAGTTTTACATATAAGTGTTTTTTGTCTGTTTTTTCTCGTT
TTTCTTCCCTCTTCGTGTCCCGTCTCCCGATAATACGCCGGGGTTATGTC
AGAAGAATCGAAAATACTTGAATTAGGTCTCATTCTTCCAGACCCGGCTA
CTTTCGTTTCGACACGTTTCGACGTGCGGTTTTTGACAGTCCCGCGTCGA
AAAGGATACGGGGATTTTTTGTCAACGGGCAGGCGTTTTTTTCCTGGTCA
TACCTTTCCTGATGCGTTCATTGTGCTTGGTTTCGTTGAGCAAACAATTG
GAGTATTTGTTACTGGGTCTAAAAGCATGCGGAACGCCGCATCAGCGCTG
CCATTTGTGGTCGGAGAAGAGGTTCAGAGCTACCCGGAAAAACACGAGCC
TACCTTCTGGCGATTACACAAGGGCACTAAGCGGGTGTGTCGTGATATCT
GACATCGAGTTGGTACAAACTGTCTGTCTGACTGCCAGTGTTATCAGTTT
GTACTCTCCAAGTCGCTCGAGCATTTTATGTATCTCGTTTACCGAATGTC
GACGGACTCGAGGGCTTTTGGTCGGGGTAAGATTAGACCCGTTTATGTCG
ACAACACAGGGAAAATAGTACAACAAAAATGCGACGTACCTCTGTTCTAT
TTTTTTTTTTTTGTACCGATCGGATGGATTTTGCCAATGACCCGTATGAC
CAC
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Coding sequence (CDS) from alignment at H-paniculata_contig6146:1005..4707-

>mRNA_H-paniculata_contig6146.13854.1 ID=mRNA_H-paniculata_contig6146.13854.1|Name=mRNA_H-paniculata_contig6146.13854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig6146:1005..4707- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACATGAGCAGCGGACGGGCAGTCGTGGTAGCAGCCATCGCTACTGT
AGTGCGACCAGGACAAAGTTTCCTCATGTCGCCAGCACTAGATGCACATG
AGCAGCGGACGGGCAGTCGTGGTAGCAGCCATCGCTACTGTAGTGCGACC
AGGACAAAGTTTCCTCATGTCGCCAGCACTAGGCGGCCACGTGGAACGGA
ACGTGCGGTGCATGATGTTCAGCACCCGCATTCCATCGTGCGCAAACGCA
GCCACCGCAGCCTTTGAAATAGACACGGCAGAGCGTAGGGCGGAGAGGTT
GTGGCAGCTTAGCGACGCTGAGAAGCCTGCGTTGGGAGAGCGTCCGGATA
CGGGCCTGGTCCAAGCGGCCACGTGGAACGGAACGTGCGGTGCATGATGT
TCAGCACCCGCATTCCATCGTGCGCAAACGCAGCCACCGCAGCCTTTGAA
ATAGACACGGCAGAGCGTAGGGCGGAGAGGTTGTGGCAGCTTAGCGACGC
TGAGAAGCCTGCGTTGGGAGAGCGTCCGGATACGGGCCTGGTCCAAGAGG
TTGCGGCTAGACTGCGGTATTCACGAAATTCTGATCACACAGACGACTTC
GTGGAGGAAGCGGAGCTGTCTGCGCTGCGGCGATATCACTACGGTGGTCT
GGAGGAGGGAGACGAAGGAGAGGATGACCGGGAGTACTACATCTAGGAGG
TTGCGGCTAGACTGCGGTATTCACGAAATTCTGATCACACAGACGACTTC
GTGGAGGAAGCGGAGCTGTCTGCGCTGCGGCGATATCACTACGGTGGTCT
GGAGGAGGGAGACGAAGGAGAGGATGACCGGGAGTACTACATCTAG
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