mRNA_H-paniculata_contig61448.13853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61448.13853.1
Unique NamemRNA_H-paniculata_contig61448.13853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-12
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS L  E++++L PG GTMS +VV LNKS+YGLKQASR +   LVS L+  GFEQ L DP
Sbjct:  293 VQSKLDHEVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDP 353
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BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.800e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E++++L PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct:  100 VQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 160
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.950e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E++++L PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct:  665 VQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 725
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.950e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E++++L PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct:  566 VQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 626
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.960e-12
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E++++L PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct:  833 VQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 893
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.680e-12
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS L  E++++L PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ L DP
Sbjct:  898 VQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDP 958
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.650e-12
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E+++++ PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct:  797 VQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 857
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.660e-12
Identity = 33/61 (54.10%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVDP 183
            +QS+L  E+++++ PG G+MS +VV LNKS+YGLKQASR + + LVS L+  GFEQ + DP
Sbjct: 1007 VQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDP 1067
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5L7Y4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.790e-12
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVD 180
            ++S+L  ++Y+RL  G G +S  +V L KS+YGL+QASRQW  +L S L + GFEQC+ D
Sbjct:  521 VRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKSCLVELGFEQCMAD 580
[Close]
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Match: A0A6H5JFP7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 7.960e-12
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQDFGFEQCLVD 180
            +QSDL  ++++RL  G G +S  +V LNKS+YGLKQASRQW   L   L   GF QCL D
Sbjct:   46 VQSDLGEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCLAD 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61448.13853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDR1_9PHAE1.010e-1259.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE1.800e-1255.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3Y0_9PHAE1.950e-1255.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.950e-1255.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.960e-1255.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JB16_9PHAE2.680e-1257.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3I1_9PHAE3.650e-1254.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.660e-1254.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y4_9PHAE6.790e-1250.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFP7_9PHAE7.960e-1253.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61448contigH-paniculata_contig61448:446..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.360263-CDS-H-paniculata_contig61448:445..6281622930692.360263-CDS-H-paniculata_contig61448:445..628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61448 446..628 -
1691481408.7332113-CDS-H-paniculata_contig61448:445..6281691481408.7332113-CDS-H-paniculata_contig61448:445..628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61448 446..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61448.13853.1prot_H-paniculata_contig61448.13853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61448 446..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61448.13853.1

>prot_H-paniculata_contig61448.13853.1 ID=prot_H-paniculata_contig61448.13853.1|Name=mRNA_H-paniculata_contig61448.13853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
IQSDLATEIYLRLLPGYGTMSNEVVLLNKSVYGLKQASRQWDQLLVSSLQ
DFGFEQCLVDP
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mRNA from alignment at H-paniculata_contig61448:446..628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61448.13853.1 ID=mRNA_H-paniculata_contig61448.13853.1|Name=mRNA_H-paniculata_contig61448.13853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig61448:446..628- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGTCAGACTTGGCCACGGAGATCTATCTTCGACTACTCCCCGGATA
TGGTACGATGTCGAATGAGGTGGTACTGCTGAATAAGTCGGTGTACGGTC
TCAAGCAGGCTTCGAGGCAATGGGATCAGTTGCTGGTATCGTCTCTGCAG
GATTTCGGTTTTGAGCAATGCTTGGTGGACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig61448:446..628-

>mRNA_H-paniculata_contig61448.13853.1 ID=mRNA_H-paniculata_contig61448.13853.1|Name=mRNA_H-paniculata_contig61448.13853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig61448:446..628- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGTCAGACTTGGCCACGGAGATCTATCTTCGACTACTCCCCGGATA
TGGTACGATGTCGAATGAGGTGGTACTGCTGAATAAGTCGGTGTACGGTC
TCAAGCAGGCTTCGAGGCAATGGGATCAGTTGCTGGTATCGTCTCTGCAG
GATTTCGGTTTTGAGCAATGCTTGGTGGACCCAATTCAGTCAGACTTGGC
CACGGAGATCTATCTTCGACTACTCCCCGGATATGGTACGATGTCGAATG
AGGTGGTACTGCTGAATAAGTCGGTGTACGGTCTCAAGCAGGCTTCGAGG
CAATGGGATCAGTTGCTGGTATCGTCTCTGCAGGATTTCGGTTTTGAGCA
ATGCTTGGTGGACCCA
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