mRNA_H-paniculata_contig6143.13851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6143.13851.1
Unique NamemRNA_H-paniculata_contig6143.13851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A6H5JPW0_9PHAE (HPPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.360e-35
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYLGLGSNVGDRH NLLRAYKGLRE GEVDATS LYETP M++++QP FLN ACRL+T+L P  LLERLK +EA++GR
Sbjct:   64 VYLGLGSNVGDRHANLLRAYKGLREFGEVDATSLLYETPPMYVENQPWFLNAACRLSTDLAPAVLLERLKALEAAVGR 141          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: D8LRL2_ECTSI (Pterin-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL2_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.370e-32
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYLGLGSNVGDRH NLLRA+KGLRE GEVDATS LYETP M+++DQP FLN ACRL+T+L P  LLERLK +EA++GR
Sbjct:   63 VYLGLGSNVGDRHANLLRAFKGLREFGEVDATSLLYETPPMYVEDQPWFLNAACRLSTDLGPAVLLERLKVLEAAVGR 140          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A835YYJ5_9STRA (Dihydropteroate synthase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.900e-19
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRE--LGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
             Y+ LGSNVGDRH NLLRAY+ LR   +G V  TS LY+T   ++ DQP FLN A RL+T L P  LL  LK++E  IGR
Sbjct:   19 AYIALGSNVGDRHGNLLRAYRELRSRGIGNVVTTSGLYQTKPQYVADQPMFLNAALRLDTSLPPALLLRALKDVERDIGR 98          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A6J4FZ64_9PROT (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=2 Tax=Magnetospirillum TaxID=13134 RepID=A0A6J4FZ64_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.210e-18
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYLGLG+N+GDR  NL  A   L  LG V+A S +YET  +++ DQP FLN A RL+T L P  LL  LK +EA+IGR
Sbjct:    4 VYLGLGTNLGDRPANLRAAIDALGALGRVEARSKVYETQPLYVTDQPAFLNMAVRLSTTLTPPALLAELKRLEAAIGR 81          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A6I1Z2T6_9CHLR (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1Z2T6_9CHLR)

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-18
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYLGLGSN+GDR  NL RA K L E   ++  S LYET  +   +QP FLN  CR  TEL P+ LL  +K IEAS+GR
Sbjct:    3 VYLGLGSNLGDRQANLARALKLLGERLHIELVSSLYETEPVDYTEQPLFLNAICRAQTELGPMQLLSLVKGIEASLGR 80          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A197K9D1_9FUNG (Dihydropteroate synthase n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K9D1_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 4.530e-18
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDA--TSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYL LGSN+GD   NL  A K L +   V    TSFLYETP M++ DQP FLN AC++ T+L P+ LL+++K+IEA +GR
Sbjct:  320 VYLALGSNLGDSAANLTNALKMLEQGDHVRVVDTSFLYETPPMYVTDQPPFLNAACKIRTDLTPLELLKKIKDIEAEMGR 399          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A1M3LW99_9PROT (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Magnetospirillum sp. 64-120 TaxID=1895778 RepID=A0A1M3LW99_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 6.380e-18
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            V+LGLG+N+GDR  NL  A K L  LG+V + S +YET  +++ DQP FLN A RL T L P+ LLE LK++E  +GR
Sbjct:    4 VFLGLGTNLGDRAGNLRMAVKALTGLGDVTSISRVYETAPLYVLDQPAFLNMAVRLETRLAPLDLLESLKDLEEELGR 81          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A7S0M6C7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6C7_9CRYP)

HSP 1 Score: 80.9 bits (198), Expect = 8.330e-18
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVD--ATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
             Y+ LGSN+GDR  N+  A + L+E GEV    TSFLYE+PA ++ DQP F+N   +++T L P+ LL+RLK +E  +GR
Sbjct:   25 AYVALGSNMGDRIANIHEALRILQEDGEVQLLGTSFLYESPAAYVTDQPAFINAVVKISTALQPLPLLDRLKAVEGRVGR 104          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: X1V0J7_9ZZZZ (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1V0J7_9ZZZZ)

HSP 1 Score: 80.1 bits (196), Expect = 9.490e-18
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
            VYLGLGSN+GDR  NL RA K L E   ++  S LYET  +   +QP FLN  C   TEL P+ LL  +K IEAS+GR
Sbjct:    3 VYLGLGSNLGDRQANLARALKLLGERLHIELVSPLYETEPVGYAEQPLFLNAICHTQTELGPMQLLSLVKGIEASMGR 80          
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Match: A0A3N4HQ33_ASCIM (Dihydropteroate synthase n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4HQ33_ASCIM)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 VYLGLGSNVGDRHKNLLRAYKGLRELG-EVDATSFLYETPAMHIKDQPQFLNGACRLNTELDPVTLLERLKNIEASIGR 234
             Y+ LGSNVG+R + + ++ + L E G +V  TS LYET  M+++DQP+FLNGAC++ T L+P+ LLE LK IEA+IGR
Sbjct:  280 AYIALGSNVGNRAQTIEKSLRMLDEAGIKVRKTSSLYETEPMYVEDQPRFLNGACQVETTLEPLPLLEELKRIEAAIGR 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6143.13851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPW0_9PHAE4.360e-3575.64HPPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRL2_ECTSI2.370e-3275.64Pterin-binding domain-containing protein n=1 Tax=E... [more]
A0A835YYJ5_9STRA4.900e-1956.25Dihydropteroate synthase-like protein n=1 Tax=Trib... [more]
A0A6J4FZ64_9PROT1.210e-1855.132-amino-4-hydroxy-6-hydroxymethyldihydropteridine ... [more]
A0A6I1Z2T6_9CHLR1.600e-1855.132-amino-4-hydroxy-6-hydroxymethyldihydropteridine ... [more]
A0A197K9D1_9FUNG4.530e-1853.75Dihydropteroate synthase n=1 Tax=Linnemannia elong... [more]
A0A1M3LW99_9PROT6.380e-1852.562-amino-4-hydroxy-6-hydroxymethyldihydropteridine ... [more]
A0A7S0M6C7_9CRYP8.330e-1848.75Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
X1V0J7_9ZZZZ9.490e-1853.852-amino-4-hydroxy-6-hydroxymethyldihydropteridine ... [more]
A0A3N4HQ33_ASCIM1.150e-1753.16Dihydropteroate synthase n=1 Tax=Ascobolus immersu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6143contigH-paniculata_contig6143:550..1458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog2880.D8LRL2
Preferred nameFOL1
KEGG rclassRC00002,RC00017,RC00121,RC00721,RC00842,RC00943
KEGG koko:K13939,ko:K13941
KEGG ReactionR03066,R03067,R03503,R03504
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003848,GO:0004150,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016772,GO:0016778,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019752,GO:0031967,GO:0031975,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity
EggNOG OGsCOG0294@1,KOG2544@2759
Ec32 ortholog description7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
Ec32 orthologEc-12_000230.1
EC2.5.1.15,2.7.6.3,4.1.2.25
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930692.303413-CDS-H-paniculata_contig6143:549..7111622930692.303413-CDS-H-paniculata_contig6143:549..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6143 550..711 -
1691481408.7103283-CDS-H-paniculata_contig6143:549..7111691481408.7103283-CDS-H-paniculata_contig6143:549..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6143 550..711 -
1622930692.317051-CDS-H-paniculata_contig6143:1383..14581622930692.317051-CDS-H-paniculata_contig6143:1383..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6143 1384..1458 -
1691481408.724026-CDS-H-paniculata_contig6143:1383..14581691481408.724026-CDS-H-paniculata_contig6143:1383..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6143 1384..1458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6143.13851.1prot_H-paniculata_contig6143.13851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6143 550..1458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6143.13851.1

>prot_H-paniculata_contig6143.13851.1 ID=prot_H-paniculata_contig6143.13851.1|Name=mRNA_H-paniculata_contig6143.13851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
VYLGLGSNVGDRHKNLLRAYKGLRELGEVDATSFLYETPAMHIKDQPQFL
NGACRLNTELDPVTLLERLKNIEASIGR*
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mRNA from alignment at H-paniculata_contig6143:550..1458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6143.13851.1 ID=mRNA_H-paniculata_contig6143.13851.1|Name=mRNA_H-paniculata_contig6143.13851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig6143:550..1458- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATCTTGGGCTCGGAAGCAACGTGGGCGACAGGCACAAGAATCTCCT CCGGGCCTACAAGGGACTGCGCGAGGTGTGAGCTGGCTGGGATACAGTAC TATTTACTCTTTTTCATACCCCGGAGTACCATCAAGCTGCTCCATCGTTG CAGAGTGGTTTCCTCGTCCAGAAAGTACAGTAATTGCAAGTGATGCTATG GCAGCAGGCAAAAGCAGGCACAAAGGCCGAATCAAGAACAACAAACAACA CAAACCATAACAAACCTTTTCTTCAGGTGTAGCACCCAAGGGCCCTAGAA TCCGCCCCTCTCCCTTCTCGAAAATCTCTCCCTTTACGCGAAATATAATT GTTATGATTTGCGTCAAGTTCAGTTTTGAAAGCACACAACCCGCAGTTCT GCTGCATGCTTTGCTTGCTCTGCCATCTTGAGTACATATATATATTGCTG ACCACGCACACGCTCTGGGCTGAAATCTGTCTGCATAATGATGATATGGA CCTGGTGGATGTTTCACACCGTTTCTACCACTGAGTGAGCTCGTACACTC AAATGATATTTTCTCTTTTGGCGAGTATTTAACTTGCCCCCATTGTTTCT TGTTTCTCTCCGTTTCATGCTGAAAGAGGAGACTAACACAGGTTCGAATT GGGAATAGTATTCCATCAGTATTTTACGATGTTCAGAACATGTAGAGTAT TTCCCCACATATTCAGCTTCCCCTGCCCCATGCCCACCCGTCCGTAGCTA GGAGAAGTGGATGCCACGTCTTTCCTTTATGAAACCCCGGCCATGCACAT AAAGGATCAGCCGCAATTCCTCAACGGTGCCTGCCGTCTGAACACCGAGC TAGATCCCGTCACACTGCTGGAGCGTCTGAAAAATATTGAGGCGTCGATT GGACGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6143:550..1458-

>mRNA_H-paniculata_contig6143.13851.1 ID=mRNA_H-paniculata_contig6143.13851.1|Name=mRNA_H-paniculata_contig6143.13851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig6143:550..1458- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATATCTTGGGCTCGGAAGCAACGTGGGCGACAGGCACAAGAATCTCCT
CCGGGCCTACAAGGGACTGCGCGAGGTATATCTTGGGCTCGGAAGCAACG
TGGGCGACAGGCACAAGAATCTCCTCCGGGCCTACAAGGGACTGCGCGAG
CTAGGAGAAGTGGATGCCACGTCTTTCCTTTATGAAACCCCGGCCATGCA
CATAAAGGATCAGCCGCAATTCCTCAACGGTGCCTGCCGTCTGAACACCG
AGCTAGATCCCGTCACACTGCTGGAGCGTCTGAAAAATATTGAGGCGTCG
ATTGGACGGTAACTAGGAGAAGTGGATGCCACGTCTTTCCTTTATGAAAC
CCCGGCCATGCACATAAAGGATCAGCCGCAATTCCTCAACGGTGCCTGCC
GTCTGAACACCGAGCTAGATCCCGTCACACTGCTGGAGCGTCTGAAAAAT
ATTGAGGCGTCGATTGGACGGTAA
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