prot_H-paniculata_contig6143.13852.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6143.13852.1
Unique Nameprot_H-paniculata_contig6143.13852.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length834
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6143.13852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 768..834
e-value: 2.8E-5
score: 25.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 788..834
score: 10.984
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 787..834

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6143contigH-paniculata_contig6143:5459..10837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6143.13852.1mRNA_H-paniculata_contig6143.13852.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6143 5409..10837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6143.13852.1 ID=prot_H-paniculata_contig6143.13852.1|Name=mRNA_H-paniculata_contig6143.13852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=834bp
MTTSNANVVAAATRPAHCVVKGCRRKPYFTQSDRSGTGGEHDHSTAATHC
RGHQPDACVPQQGASSSSLSNKNNPREAMLMAIALTPCEPGEREGISSAR
TAPATTTSAVSPSLALPPNKTSRPFACRFEGCNKRASHGVERNKRPTHCP
AHRDQTTMVADHRHRLCDAEMDPPCVRQASYGWPSAPAAAVVATEREPES
TRVAKITNGSESGANAKRGTTTTPTKKGSAQRQALFCAAHRKVGMVDLRN
SRGCAAEGCSKRPTHAFDGQKAKFCAAHREVGMMNVVRTLCEVDGCMIAR
RFGSPGQKPRFCGAHREGGMVNLKDRRCEYPLCPSQPSFAAVGENKPRFC
SHHKKQSMINVRHPRCRYRDPWGATCEVYPTYANKDAKAPVFCLDHRMSG
MVDLKRAKEASKRSRKRRRPQPPLVPGSTFGSDPIAANISEMLNFGAIGA
LAGTGAIVSVGGETLPAPPSPPSTREMGDAVGASIDVACMDVRSSHSNQL
LPEMLGSSVMTAGAEKVNGVGMSGNLKLATAETEPRSAVSTGRDVRVSSD
AGETRDSKNRRARVPFSESAFALLPVSIPRGSAAIQREVEAAVAAAAAAA
AAAAVESGAANGNATAALDDNNVQQEQNIGEGGLLLPGQQTPREPVSFSA
EDPASSVLISGLETLNRNELFDDGFNNNRDLDTAERPDADGSPPFLSISG
SEQHLGHYRQATPVCSVISSRDHVSEFSRVAQQVDGGVTQRENGHANDEK
EDREGGDVEEQRKSRVGCREKSNARVDTEGGGALRWDCIKCSKAIEERDR
YVLVPCGHGLFHNSCTADFAAIGTGGGRPCPTCR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING