mRNA_H-paniculata_contig6133.13843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6133.13843.1
Unique NamemRNA_H-paniculata_contig6133.13843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: D7G8R1_ECTSI (Macro domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8R1_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.120e-52
Identity = 96/156 (61.54%), Postives = 123/156 (78.85%), Query Frame = 2 
Query:  527 ASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVLETFEE 994
            A+ W MLGGGGVDGAIHRAAG +L  AC+ V+  + ++RCP GEARITPGFRL AK VIHTVGPVY   E SAP+L ++ KNSLLL +E  +K++AFPAISCG+YGYP   AA+++I T+L+F + IDL+EFVLFG+DTY+PF+ +AS  L   +E
Sbjct:   72 ANEW-MLGGGGVDGAIHRAAGRDLLKACYDVEPNSEDIRCPTGEARITPGFRLPAKFVIHTVGPVYENKEVSAPLLRSAIKNSLLLCKENGVKSVAFPAISCGVYGYPAGEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYNPFMKKASEKLAVVKE 226
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A835HEI3_9MAGN (Macro domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HEI3_9MAGN)

HSP 1 Score: 176 bits (446), Expect = 4.400e-47
Identity = 85/151 (56.29%), Postives = 109/151 (72.19%), Query Frame = 2 
Query:  527 ASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            A++ +MLGGGGVDGAIHRAAGPEL +AC+ V EV R VRCP GEAR+TP F+L    VIHTVGP+Y  HEK   +L ++++NSL L +E  ++ IAFPAISCG+YGYP   AA +SI+ I +F  D   V FVLF  D Y+ ++  AS +L
Sbjct:   86 AANERMLGGGGVDGAIHRAAGPELREACYKVPEVRRGVRCPTGEARVTPAFQLPVSRVIHTVGPIYDDHEKPEVLLESAYRNSLTLAKENSIQYIAFPAISCGVYGYPYEEAATISISVIKEFAGDFKEVHFVLFSDDIYNIWLERASMLL 236
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A7C8YWG7_OPUST (RNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YWG7_OPUST)

HSP 1 Score: 177 bits (449), Expect = 4.740e-47
Identity = 87/151 (57.62%), Postives = 109/151 (72.19%), Query Frame = 2 
Query:  527 ASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            A++ +MLGGGGVDGAIHRAAGPEL +AC  V EV   VRCP GEARITPGFRL A  VIHTVGP+Y G +     L N++KNSL L +E  ++ IAFPAISCG+YGYP   AAKV+I+T+ +F  D   + FVLF  D Y+ +V +A  ++
Sbjct:  120 AANERMLGGGGVDGAIHRAAGPELKEACAKVPEVRPGVRCPTGEARITPGFRLPAAHVIHTVGPIYDGDKNPEESLRNAYKNSLRLAKENNIQYIAFPAISCGVYGYPYDEAAKVAISTVKEFANDFKEIHFVLFSDDIYNVWVEKAKEIV 270
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A5C7GZP7_9ROSI (Macro domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GZP7_9ROSI)

HSP 1 Score: 173 bits (438), Expect = 2.060e-46
Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 2 
Query:  539 QMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVLETFE 991
            +MLGGGG DGAIHRAAGP+L +AC+ V EV   VRCP GEARITPGF+L A  VIHTVGP+Y  H   A +L +S+KNSL + +E  ++ IAFPAISCG++GYP   AA V+I+TI +F  D   V FVLF  D Y  ++ +A  +L+  E
Sbjct:   51 RMLGGGGADGAIHRAAGPQLREACYKVPEVRSGVRCPTGEARITPGFKLPASHVIHTVGPIYDVHSNPAALLRSSYKNSLSVAKENNIQYIAFPAISCGVFGYPFEEAATVAISTIKEFANDFKEVHFVLFADDIYSVWLKKAKELLQAQE 201
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: M1AU85_SOLTU (Protein LRP16 n=4 Tax=Solanum TaxID=4107 RepID=M1AU85_SOLTU)

HSP 1 Score: 172 bits (437), Expect = 2.160e-46
Identity = 94/191 (49.21%), Postives = 120/191 (62.83%), Query Frame = 2 
Query:  437 SVTRELLPRSLTSMHIGAVV----------CVLPYFFRFVASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            SVT +L P SL  +  G +            V P       ++ +MLGGGG DGAIHRAAGPEL DAC+ V+EV   VRCP GEARITPGFRL A  VIHTVGPVY  +      L N+++NSL + +E  ++ IAFPAISCG++GYP   AA V+I+T+ +F  D+  V FVLF  + YD +V  A+  L
Sbjct:    8 SVTFQLTPSSLLKIQKGDITRWSIDGSSDAIVNP-------ANERMLGGGGADGAIHRAAGPELRDACYKVREVHPGVRCPTGEARITPGFRLPASHVIHTVGPVYDANPNPKASLTNAYRNSLRVAKENNIQYIAFPAISCGVFGYPYDEAATVAISTVKEFGSDLKEVHFVLFSDEIYDAWVTAANEQL 191
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A6N2AZA7_SOLCI (Macro domain-containing protein n=3 Tax=Solanoideae TaxID=424551 RepID=A0A6N2AZA7_SOLCI)

HSP 1 Score: 172 bits (437), Expect = 2.160e-46
Identity = 93/191 (48.69%), Postives = 120/191 (62.83%), Query Frame = 2 
Query:  437 SVTRELLPRSLTSMHIGAVV----------CVLPYFFRFVASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            SVT +L P SL  +  G +            V P       ++ +MLGGGG DGAIHRAAGPEL DAC+ V+EV   +RCP GEARITPGFRL A  VIHTVGPVY  +      L N+++NSL + +E  ++ IAFPAISCG++GYP   AA V+I+T+ +F  D+  V FVLF  + YD +V  A+  L
Sbjct:    8 SVTFQLTPSSLLKIQKGDITRWSIDGSSDAIVNP-------ANERMLGGGGADGAIHRAAGPELRDACYKVREVQPGIRCPTGEARITPGFRLPASHVIHTVGPVYDANPNPKASLTNAYRNSLRVAKENNIQYIAFPAISCGVFGYPYDEAATVAISTVKEFGSDLKEVHFVLFSDEIYDAWVTAANEQL 191
[Close]
BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: B9S4E3_RICCO (Protein LRP16, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S4E3_RICCO)

HSP 1 Score: 174 bits (442), Expect = 4.220e-46
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 2 
Query:  539 QMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            +MLGGGG DGAIHRAAGPEL DAC+ V EV   +RCP GEARITPGF+L A  VIHTVGP+Y  +  SA IL N+++NSL + ++  +K IAFPAISCG+Y YP   AA VSI+TI +F  DI  V FVLF  + ++ +V +A  +L
Sbjct:  121 KMLGGGGADGAIHRAAGPELVDACYKVPEVRPGIRCPTGEARITPGFKLPASHVIHTVGPIYDANRNSAAILKNAYRNSLSVAKDNNIKFIAFPAISCGVYLYPFEEAASVSISTIKEFADDIKEVHFVLFSDEIFNVWVKKAKELL 267
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A118K2S0_CYNCS (Appr-1-p processing n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K2S0_CYNCS)

HSP 1 Score: 173 bits (438), Expect = 1.370e-45
Identity = 83/147 (56.46%), Postives = 106/147 (72.11%), Query Frame = 2 
Query:  542 MLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVLE 982
            MLGGGG DGAIH+AAGPEL  AC+HV EV   VRCP GEARITPGF+L A  VIHTVGP+Y  +   A  L+N+++NSL + RE  ++ +AFPAISCGI+GYP   AA V+I+TI + C DI    FVLF  D Y+ ++ +A  +L+
Sbjct:  118 MLGGGGADGAIHQAAGPELRTACYHVPEVRPGVRCPTGEARITPGFKLPASHVIHTVGPIYDANSNVAAFLSNAYRNSLRVARENNIQYVAFPAISCGIFGYPFEEAATVAISTIKEHCNDIKEAHFVLFSDDIYNVWLKKAEELLQ 264
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BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: UPI00053F65AC (uncharacterized protein LOC104887643 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F65AC)

HSP 1 Score: 172 bits (436), Expect = 1.470e-45
Identity = 82/152 (53.95%), Postives = 111/152 (73.03%), Query Frame = 2 
Query:  527 ASSWQMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVLE 982
            A++ +MLGGGGVDGAIHRAAGPEL +AC+ V EV   VRCP GEARITPGFRL A  VIHTVGP+Y   +    +L N+++NSL++ +E  ++ IAFPAISCG+YGYP   AA ++++T+ +F  D   V FVLF  D Y+ ++ +A  ++E
Sbjct:   93 AANERMLGGGGVDGAIHRAAGPELKEACYKVPEVRPGVRCPTGEARITPGFRLPASHVIHTVGPIYDVVQNPEVLLKNAYRNSLMVAKENNIQYIAFPAISCGVYGYPFDEAATIAVSTVEEFANDFKEVSFVLFSDDIYNVWLDKAKAIVE 244
[Close]
BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Match: A0A834TYI0_9FABA (Appr-1-P processing enzyme family protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TYI0_9FABA)

HSP 1 Score: 170 bits (431), Expect = 2.060e-45
Identity = 82/147 (55.78%), Postives = 106/147 (72.11%), Query Frame = 2 
Query:  539 QMLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNAKAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIYGYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVL 979
            +MLGGGG DGAIHRAAGP+L  AC++V EV   +RCP GEA+ITPGFRL A  VIHTVGP+Y      A  LA++++N L + +E  ++ IAFPAISCG++GYP   AA V+I+TI +F  D   V FVLF  DTYD ++ +AS +L
Sbjct:   54 RMLGGGGADGAIHRAAGPDLLQACYNVPEVRPGIRCPTGEAKITPGFRLPASRVIHTVGPIYNSDSNPAASLASAYRNCLRVAKENNIQYIAFPAISCGVFGYPYDEAATVAISTIKEFKNDFKEVHFVLFAADTYDVWINKASELL 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6133.13843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8R1_ECTSI2.120e-5261.54Macro domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835HEI3_9MAGN4.400e-4756.29Macro domain-containing protein n=1 Tax=Coptis chi... [more]
A0A7C8YWG7_OPUST4.740e-4757.62RNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A5C7GZP7_9ROSI2.060e-4655.63Macro domain-containing protein n=1 Tax=Acer yangb... [more]
M1AU85_SOLTU2.160e-4649.21Protein LRP16 n=4 Tax=Solanum TaxID=4107 RepID=M1A... [more]
A0A6N2AZA7_SOLCI2.160e-4648.69Macro domain-containing protein n=3 Tax=Solanoidea... [more]
B9S4E3_RICCO4.220e-4657.82Protein LRP16, putative n=1 Tax=Ricinus communis T... [more]
A0A118K2S0_CYNCS1.370e-4556.46Appr-1-p processing n=1 Tax=Cynara cardunculus var... [more]
UPI00053F65AC1.470e-4553.95uncharacterized protein LOC104887643 n=1 Tax=Beta ... [more]
A0A834TYI0_9FABA2.060e-4555.78Appr-1-P processing enzyme family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6133contigH-paniculata_contig6133:2399..8911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog2880.D7G8R1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ADP-D-ribose binding
EggNOG OGsCOG2110@1,KOG2633@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1691
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6133.13843.1prot_H-paniculata_contig6133.13843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6133 2777..6775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.6363153-UTR-H-paniculata_contig6133:2398..27761622930690.6363153-UTR-H-paniculata_contig6133:2398..2776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 2399..2776 -
1691481407.8163788-UTR-H-paniculata_contig6133:2398..27761691481407.8163788-UTR-H-paniculata_contig6133:2398..2776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 2399..2776 -
1622930690.7695477-UTR-H-paniculata_contig6133:7179..72321622930690.7695477-UTR-H-paniculata_contig6133:7179..7232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 7180..7232 -
1691481407.891552-UTR-H-paniculata_contig6133:7179..72321691481407.891552-UTR-H-paniculata_contig6133:7179..7232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 7180..7232 -
1622930690.7859652-UTR-H-paniculata_contig6133:8827..89111622930690.7859652-UTR-H-paniculata_contig6133:8827..8911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 8828..8911 -
1691481407.900641-UTR-H-paniculata_contig6133:8827..89111691481407.900641-UTR-H-paniculata_contig6133:8827..8911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6133 8828..8911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.6560342-CDS-H-paniculata_contig6133:2776..35561622930690.6560342-CDS-H-paniculata_contig6133:2776..3556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 2777..3556 -
1691481407.8282428-CDS-H-paniculata_contig6133:2776..35561691481407.8282428-CDS-H-paniculata_contig6133:2776..3556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 2777..3556 -
1622930690.6723347-CDS-H-paniculata_contig6133:3847..39161622930690.6723347-CDS-H-paniculata_contig6133:3847..3916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 3848..3916 -
1691481407.8380902-CDS-H-paniculata_contig6133:3847..39161691481407.8380902-CDS-H-paniculata_contig6133:3847..3916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 3848..3916 -
1622930690.6870112-CDS-H-paniculata_contig6133:4806..49051622930690.6870112-CDS-H-paniculata_contig6133:4806..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 4807..4905 -
1691481407.848227-CDS-H-paniculata_contig6133:4806..49051691481407.848227-CDS-H-paniculata_contig6133:4806..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 4807..4905 -
1622930690.7024496-CDS-H-paniculata_contig6133:5339..54081622930690.7024496-CDS-H-paniculata_contig6133:5339..5408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 5340..5408 -
1691481407.8588948-CDS-H-paniculata_contig6133:5339..54081691481407.8588948-CDS-H-paniculata_contig6133:5339..5408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 5340..5408 -
1622930690.72183-CDS-H-paniculata_contig6133:5725..57831622930690.72183-CDS-H-paniculata_contig6133:5725..5783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 5726..5783 -
1691481407.8664117-CDS-H-paniculata_contig6133:5725..57831691481407.8664117-CDS-H-paniculata_contig6133:5725..5783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 5726..5783 -
1622930690.7361975-CDS-H-paniculata_contig6133:6231..62781622930690.7361975-CDS-H-paniculata_contig6133:6231..6278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 6232..6278 -
1691481407.8742402-CDS-H-paniculata_contig6133:6231..62781691481407.8742402-CDS-H-paniculata_contig6133:6231..6278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 6232..6278 -
1622930690.752691-CDS-H-paniculata_contig6133:6721..67751622930690.752691-CDS-H-paniculata_contig6133:6721..6775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 6722..6775 -
1691481407.882738-CDS-H-paniculata_contig6133:6721..67751691481407.882738-CDS-H-paniculata_contig6133:6721..6775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 6722..6775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6133.13843.1

>prot_H-paniculata_contig6133.13843.1 ID=prot_H-paniculata_contig6133.13843.1|Name=mRNA_H-paniculata_contig6133.13843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=392bp
MLGGGGVDGAIHRAAGPELADACWHVKEVARNVRCPKGEARITPGFRLNA
KAVIHTVGPVYAGHEKSAPILANSFKNSLLLLREKQLKTIAFPAISCGIY
GYPPVAAAKVSIATILKFCQDIDLVEFVLFGQDTYDPFVAEASRVLETFE
EPEEDDKEGADGNSRKHGAGDEHGASKAASVESSPHTSSTSEGKDVAEKG
SSGGKLLSAASAGTTAEGADDGKGIAAARLKRGEGAEDAGQPEMKLHKDE
QTTADWEQTAARQPNDPPTGQGEPQESAHGTVASMPHTKTEDRSDSADAI
SEANAGVSTAEVEIESQEDAIAMPGECSSEGGGTEATTSMETEEIQDSQE
TLLMEYSPEDTLTLPGESPSEGAGAEQRSCSSGDGAVNQGR*
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mRNA from alignment at H-paniculata_contig6133:2399..8911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6133.13843.1 ID=mRNA_H-paniculata_contig6133.13843.1|Name=mRNA_H-paniculata_contig6133.13843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6513bp|location=Sequence derived from alignment at H-paniculata_contig6133:2399..8911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGTCAAGAAATCGCAGCAGGATCGATTCCCCCGCGTCCTCTTTCAA
CTAAAGGGATCAAGCGTGCTGGCAATCACAAAAGGTGAGCGGTGGATGAA
TGAGGAAGCTAGTGAGCATGGAAGAGAGTAAAAGCAGAAGAAAAGCTATA
CAGCTGTGCTGCTTGATGGCACAGATCGGCACCTTCGGATAGCAGGGTAC
AGAGAATAGTACATACGATCGTGTGAACAGCGCTTTTCGAGAGCCGAGAA
GCGGGCACATGTTGAACCGCTGGCTTGAAAACATGGACAACATTCATGAC
GTACTATGTCGTGGTGTCGTATGTATAAAGCCTTGGCGACTGCAACCTCC
GTGGATGTGGATGTGGAGCCGAGAACAACCCGCAATTTCCAGCGTTCTGC
CGCTTTCAATATTCAACCCGTGCTGTGCCGGATACTCAAAAATAACAAAA
AAGGCATCTATCTGACAGTCCCGCTGTCGAAAAGATTTTAGGTCGGGCTT
TTTCACGAATGGGGGTGTGGGTCGGTTTCCGCCTCGCAGTACTGCAGTAT
GATAGCGGAATGTATCCTGCACGTTTGTTCACACAACGATCAATAAAAAA
TGTGTCGTTTCCATTTTATCGGTCAATTTTTTTTGGGGTCACAAGATCCC
TACAGGAATACTCCTGCAGTTGACGGGAGTCAATCAAATGTGCAGGCTTA
GTCATTCTACTTTTGGGCTGCTGTGTTTGTTTTCGGGCGATGTCGTTTTG
TGAGCACAATAGCAGCATAGTATCGGCAGCCGGGCGAGAGCGATGGCAGC
GAATACAATGCTCGAGTACCCTGCCACCGTAGCTGCAGACGATACCTATT
ATGAGCTTATAGACAGACGTAGTTGGGCGATAACTTTGTCTGTATTTTGC
TGTCTGTACTGTCTGCGCTGTCTGCATTGTCTGCATCGTCTGAACGTGTT
AGAACAGCGACGTGAGAATTTTGCTGTGTTCCATTTCTATGTCCTGGCGT
GTGGGTTTGTGCGGCACACACACCCTGTACAGTCAATCACCTGTAATTTG
ATTTGTGCTTCGCATTTCGATCAAGTGCTGATTGCTTTCACGAGATGCAA
AGCCGTGCCAACCCTCTCTGTGTTGTATGCCTGTAATTACGGAAGTATGT
GTGCTGTATAGAGTTCCCCATCCTCGTAATTATGTCATGGGTATTTGTCG
GGAAAAAATCCGAATTGATTTTGGTTGTTTTCCAAGCATGGGTTTATCAG
AGACTTCACAGGGACCGGCGCCAGGAGGGTTAAGTGCTCGTTTTTTTCTA
ATCAGATCAAGCTTTTGCTCACCATTTGAAAAAATAGTACGAACACCATC
CACTTAATTTCTGATGAAGAACAGCTGCCGGTTAACCTTGCAGCATCTGT
CTTATCCACTGGTTGTACAAAACATTGCAGCCTTCCATATATTGATCATT
GGGCTAAGCATCCGTACTTGGGGGCATCTATTTTCAATTCATGAAATATG
TCCGAGCTCCAAACTGTTGTTGGCTTGCTTATCGCTAATTTCAAGAGCGT
CGTACTTCTCGCAACGCAGGAGACTTGACTCGGTGGGGATCTGTTTTCAG
CCTATGGATATTCTCAAGCTCTAGACTATCGCTAGCTGCTGATCGCTAAT
TTAAGAGCCTTGTTCTTTTCGCAATACAGGAGACTTGACTCAGTGGGAAG
GTGACGCCATCGTCAACGCCGCTAATGAAAGGGTGAGTGAAACATTCCAA
TACACTGCTCGTAGGCTTGCGGCCTAATGTGAATCTGGTCACAAGATCTA
TGATACAACTTTGAAAGCCCCTTCCTACAGAAACCCTTTCCTACTAATCT
TGTTCCAGCAGTTGCGATAATACGAAGGGAGAAAGCCCCGTTGCCGGGCG
TGTTCGCGCAGGGGGTCTCTTGCACGAGTTTTAATTGTTTCTTGTAGGCA
AACGCAAGTGCATTTTTTAGTCGAGACCCAATATTTATTGTGCATGCGTT
ATAAGTTGTAAATTGTAGCTCATGATACGTATCAGTTACCAGGGAGTTGT
TACCCAGATCGTTGACGTCCATGCACATTGGGGCGGTCGTGTGTGTACTC
CCTTATTTTTTTCGTTTCGTCGCGTCTTCGTGGCAGATGCTGGGAGGGGG
AGGCGTGGACGGGGCGATTCACCGAGCTGCGGGACCAGAGGTGCGCACGG
CATTCCGCCGTTGATTGTTGATAATTTTCGGGGTGATTTGGCATCGTTTC
GAACGAAGTTGTTCTGGCGTTCCTCCCTGCCGATTAGGTGGGTGACACGT
GTGTCGTTGTAGGGGACAGAAGTGATGACTACTCTGCAATGCAGTTCGTG
GCTCCGCTAGTCGATGCAAAAGTTAGAATTTGAGTGTCGGAGGTAAATAC
TCCAAGGTAGGAAGGAGGATACTTTGCGCACGCGTGGGTGGTTCCGCGCC
CTGGTGGAGAGAGATTAGTGGAACCCCACGTCAGTTAGAGTTTCTGTGTT
TCATGGTGCACCAACTCTATTTTGTCTCTGATCGTGCAGTTGAAATGATG
AGTATAGCAACTTCTGACACTTGTAGTTCACACGTGATGTTTTTTGCCGC
TTGTTTGCTCCCTCTGTCGATTTTTGTTTGTAGCTGGCGGACGCGTGCTG
GCATGTCAAAGAAGTGGCGCGAAATGTCCGGTAAGTGGTGAGGAGTTACC
GACGGGTCAGAACCAAGCATGGTCAGCCCTTTACCATACGCCTGTTTGTT
TGTCCCTCCATAACTTTCACTCATCGCAAATTTGGTTTGGTGAAGCTTAA
AGGGATCAGGATTTTATGGGAAACTGCTGTCCTAGTGCTAGGAGTTGGAT
CAGCTCTTTCCAACCTGTGTATTTGAATTTAAGCATTGATCTCGATTTGC
TTGGGTAATCTCGCCGAATGGATGTCACCAAATTCGGTAAGCGCTGCGGC
TCCATGTGTTATGAATCTTGAATCTTGTTGGGCTCAAGGCGGTTCCTACG
CTCACTTGGAAAACTCAGCTTAATCGTGCGTCATGCCTCCCCCTCCTCTC
TTTTTTAGACTTCAGCATGGTCAGAGAAAAAATGTTCACTCCACACTTTT
TATCGTGCTCCTTTTTGCCTTTCCGCAGATGCCCGAAGGGTGAAGCTCGC
ATTACACCTGGGTTCCGTCTCAATGCCAAGGCTGTGGTGAGTGGAGACTT
TTCTTTTTTTCTTTCGCCAAGTTATAAAAACAGCGCGTCGCGAATCTGAG
GGTACAGATTGGAGCGATGGCTTGCCTCCCGCCGGGTCGGCCTCACCTGT
TCGCAGAGCTCCCAAGCACGACAGAACAGACAGTGCAACATTTTTCATTT
TCTATGAAGCCATGTAGTCGCTCAGCCAGGGTCCCGATCGATGGCTCGTT
GTTTTTTGCAATTGATAACTTTATATTGCTGCTTGATGGGTGGATCGTGG
TGCGATGTCTCTAACGTCTTAACGGTGCTCTGTTCTTCACCCCACGCGCA
CAGATCCACACTGTGGGTCCAGTTTACGCCGGTCATGAGAAGTCGGCTCC
GATTCTCGCGAATTCGTTCAAGGTGAGAGCATTCGCAACATCTGCTTGTC
CGGTTTAGTATTTAATGTATGCCCTTGGCCAGCACTTCATATGTGTGTAG
AAAACAGTGACTCCACTACTGAATGCGCTGCGGTGCTGCTGTGTATTACT
CTCATTCCGGCGGGGATGGTGTACTTGACTCGTGCTGAATCGTCTTGCAG
AAGCCCACTTCAGAGTATGGAGCAGCGACGCATTTCCTGCTGAAATGCGC
TTTTGTGTTCTATCTGCTGTGTACGCCGTATTGACTGCGTGTCAGCGCGG
CGCAAGAATTCATGCCGTAGGCTGCGGACTTGACACTCTTGGCCATGGTT
ATCTTTTGGTGTCTTGGACGAATGTGAAGGCACGTATGCATCTTGCATTT
AACGAGGCGACGTTTCCTCGGCTTGTGATTTGGTGCATGTTTTTGTTGGA
CGGCAGAATTCATTGCTATTGCTGAGGGAGAAGCAGCTGAAGACCATTGC
TTTCCCGGCCATATCCTGCGGCATTTACGGGTATCCGCCAGTTGCGGCAG
CGAAGGTGCAACCCTGATCGAAGCTATTGGCGGTCATTTACATGGCTCCC
ACCTTGGTATATATTCACGATGTTGCTGTGTAGCCCGTCAAAAGTCTACT
CTCTCGTGACCTTGGTGAGAAGTGAAAGGGTCGATTCTCAGAGATATGTA
TTAAATAGGAAGCAGAAAGCGCCGCAAAAAGTAACGTTTCGCTCGTGCAG
CGTTGCAAGCTAACCTCGCAGTGTATTATTTTCAGCTGGTCATTCAAATG
TTTTATAGATTTGCCTCAGTTTTCGAAGCTAGATAATTCTGCACATCATA
CTTTAAGGCCTGAGCGACAAATCAATCGACCTACAACAGTGCTTTTCGTG
TGGATTCGCCAAATACAATGGGGCAGCAAAACATGATGAAGACATTTTGG
AACTTTCCTCCTTTGCTATTGCACCGCTCATTGGCCGTTGCTTCATCAAA
GGGAGGCGTGGGGTGAGAACGCGTCTGTGGACCTTCACAGACATCCAGTT
GAGACTAGGTTGTTTCTACGTGTCTACCTCTCTGCTATGCGTGGTATCAC
AATGTGTCGGTGGGAAAAGCGATAATTAATTGATTACCATGTGCTTTGAT
TACGTGCCAATGGGTTGTTTTTTACCTTGAGATAACGCACAGAATAGCCG
AAGAGAGAAATAAACGCGATATGAGTATGCACATCAATGTTGATGTAGAA
ATAGATGGAGCGAGACGCCTTCTATTGCCAGATTGCCAATACTCTTTTTC
ACTCACGAATCACCTCCCTTTGATATCGCGCTGTGAAATAATTTACCACA
GCCGCTTCTTTTTTTGCTCCGCACGGGAGTTGCGATAACAGAGGATATTG
CGGTATCTCTCACACAAAGGGAGGGTGCGTTTTCGCTGTTGGCAGGTTTC
CATTGCAACGATCCTGAAGTTCTGTCAAGATATCGACCTCGTTGAGTTCG
TGCTCTTCGGACAGGTTAGTGGACTGAAAAGCCCCAGGTACAGTGAAGGT
CCTTTCAGGAGATGCCCACCTTGCTCGTTACAACTGGATGTAAAAAATGT
ATATTTGGTTCTGTCGAGTTGTCGGTACCATTAGGTAGTCCCAAGGTCAA
TCACGAAGTTTACTGAACTGGTGAGTCGTCAGGGTTGTTCTGGCGGTCCA
TCTTCGCGTCGCCAATACTTAAGGGAGACTCGGCGCAGCCGAGACGTATC
TACCTCTGCGTTTCTGATACCCTCCTCGGTACCGCCTTTGTGTGCCATTC
CACAGGATACGTACGATCCCTTCGTTGCCGAAGCCTCGAGAGTGCTTGAG
ACATTCGAAGAGCCCGAAGAAGACGATAAGGAGGGCGCTGATGGAAACAG
CCGTAAGCATGGCGCTGGGGACGAACACGGTGCTTCGAAAGCTGCGAGCG
TTGAGAGCAGTCCACATACCTCGTCCACATCGGAAGGCAAGGATGTGGCC
GAGAAGGGATCAAGCGGAGGCAAGCTTCTGAGTGCAGCGTCGGCTGGAAC
GACCGCGGAAGGAGCTGATGACGGTAAAGGCATTGCCGCTGCTCGTTTGA
AGCGTGGCGAGGGAGCCGAGGATGCTGGCCAGCCGGAAATGAAGTTACAC
AAAGACGAGCAGACAACGGCCGATTGGGAGCAGACGGCGGCACGCCAGCC
CAACGACCCACCCACTGGTCAAGGCGAACCGCAGGAGAGTGCACATGGCA
CGGTGGCATCCATGCCTCATACCAAGACAGAAGATCGAAGTGACAGTGCC
GACGCAATTAGTGAAGCAAATGCCGGTGTCTCTACTGCCGAGGTGGAAAT
AGAGTCGCAGGAAGACGCAATTGCTATGCCGGGAGAATGCTCTAGTGAGG
GCGGAGGAACCGAAGCGACCACCAGCATGGAGACAGAAGAAATTCAGGAT
TCTCAAGAAACACTGTTGATGGAGTATTCACCGGAAGACACATTGACTTT
GCCAGGAGAGTCACCAAGCGAAGGCGCAGGAGCTGAGCAAAGGTCATGCT
CTTCAGGAGACGGTGCAGTCAATCAAGGACGATAATCGAATGGAGAACCA
GAAGCGAGCCCGTGTAGTTTTTTTTTTCTCACACAGGGTGCTCGCGTGAT
GGGCCTCAAGAGACACCGTCGAAGAGAGTGTAAATGTAGTCAGTGTTGTT
TCGTTGTTAATTTAGCGCAAAAGTGGGACAGGCTTGCATCTGGTCGTGGG
GCCCAACAGCATCAAAAATAAATGCTGCTGACGCAGTTCGTACGTGAGTT
GGCTTGTTAGTGATAGACTGTCTCTCTACTGGTGACCATCGCTACTAGCA
GAAAAGCGACCGTAACTTGCAGCATTTCGGGCATAAGTATCCAAATAAAC
TGGCGGAACATGATAATTGAGTGGCAACGAAACACGTCTTCTGGACGCTA
TACATACGCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig6133:2399..8911-

>mRNA_H-paniculata_contig6133.13843.1 ID=mRNA_H-paniculata_contig6133.13843.1|Name=mRNA_H-paniculata_contig6133.13843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at H-paniculata_contig6133:2399..8911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGGAGGGGGAGGCGTGGACGGGGCGATTCACCGAGCTGCGGGACC
AGAGATGCTGGGAGGGGGAGGCGTGGACGGGGCGATTCACCGAGCTGCGG
GACCAGAGCTGGCGGACGCGTGCTGGCATGTCAAAGAAGTGGCGCGAAAT
GTCCGCTGGCGGACGCGTGCTGGCATGTCAAAGAAGTGGCGCGAAATGTC
CGATGCCCGAAGGGTGAAGCTCGCATTACACCTGGGTTCCGTCTCAATGC
CAAGGCTGTGATGCCCGAAGGGTGAAGCTCGCATTACACCTGGGTTCCGT
CTCAATGCCAAGGCTGTGATCCACACTGTGGGTCCAGTTTACGCCGGTCA
TGAGAAGTCGGCTCCGATTCTCGCGAATTCGTTCAAGATCCACACTGTGG
GTCCAGTTTACGCCGGTCATGAGAAGTCGGCTCCGATTCTCGCGAATTCG
TTCAAGAATTCATTGCTATTGCTGAGGGAGAAGCAGCTGAAGACCATTGC
TTTCCCGGCCATATCCTGCGGCATTTACGGGTATCCGCCAGTTGCGGCAG
CGAAGAATTCATTGCTATTGCTGAGGGAGAAGCAGCTGAAGACCATTGCT
TTCCCGGCCATATCCTGCGGCATTTACGGGTATCCGCCAGTTGCGGCAGC
GAAGGTTTCCATTGCAACGATCCTGAAGTTCTGTCAAGATATCGACCTCG
TTGAGTTCGTGCTCTTCGGACAGGTTTCCATTGCAACGATCCTGAAGTTC
TGTCAAGATATCGACCTCGTTGAGTTCGTGCTCTTCGGACAGGATACGTA
CGATCCCTTCGTTGCCGAAGCCTCGAGAGTGCTTGAGACATTCGAAGAGC
CCGAAGAAGACGATAAGGAGGGCGCTGATGGAAACAGCCGTAAGCATGGC
GCTGGGGACGAACACGGTGCTTCGAAAGCTGCGAGCGTTGAGAGCAGTCC
ACATACCTCGTCCACATCGGAAGGCAAGGATGTGGCCGAGAAGGGATCAA
GCGGAGGCAAGCTTCTGAGTGCAGCGTCGGCTGGAACGACCGCGGAAGGA
GCTGATGACGGTAAAGGCATTGCCGCTGCTCGTTTGAAGCGTGGCGAGGG
AGCCGAGGATGCTGGCCAGCCGGAAATGAAGTTACACAAAGACGAGCAGA
CAACGGCCGATTGGGAGCAGACGGCGGCACGCCAGCCCAACGACCCACCC
ACTGGTCAAGGCGAACCGCAGGAGAGTGCACATGGCACGGTGGCATCCAT
GCCTCATACCAAGACAGAAGATCGAAGTGACAGTGCCGACGCAATTAGTG
AAGCAAATGCCGGTGTCTCTACTGCCGAGGTGGAAATAGAGTCGCAGGAA
GACGCAATTGCTATGCCGGGAGAATGCTCTAGTGAGGGCGGAGGAACCGA
AGCGACCACCAGCATGGAGACAGAAGAAATTCAGGATTCTCAAGAAACAC
TGTTGATGGAGTATTCACCGGAAGACACATTGACTTTGCCAGGAGAGTCA
CCAAGCGAAGGCGCAGGAGCTGAGCAAAGGTCATGCTCTTCAGGAGACGG
TGCAGTCAATCAAGGACGATAAGATACGTACGATCCCTTCGTTGCCGAAG
CCTCGAGAGTGCTTGAGACATTCGAAGAGCCCGAAGAAGACGATAAGGAG
GGCGCTGATGGAAACAGCCGTAAGCATGGCGCTGGGGACGAACACGGTGC
TTCGAAAGCTGCGAGCGTTGAGAGCAGTCCACATACCTCGTCCACATCGG
AAGGCAAGGATGTGGCCGAGAAGGGATCAAGCGGAGGCAAGCTTCTGAGT
GCAGCGTCGGCTGGAACGACCGCGGAAGGAGCTGATGACGGTAAAGGCAT
TGCCGCTGCTCGTTTGAAGCGTGGCGAGGGAGCCGAGGATGCTGGCCAGC
CGGAAATGAAGTTACACAAAGACGAGCAGACAACGGCCGATTGGGAGCAG
ACGGCGGCACGCCAGCCCAACGACCCACCCACTGGTCAAGGCGAACCGCA
GGAGAGTGCACATGGCACGGTGGCATCCATGCCTCATACCAAGACAGAAG
ATCGAAGTGACAGTGCCGACGCAATTAGTGAAGCAAATGCCGGTGTCTCT
ACTGCCGAGGTGGAAATAGAGTCGCAGGAAGACGCAATTGCTATGCCGGG
AGAATGCTCTAGTGAGGGCGGAGGAACCGAAGCGACCACCAGCATGGAGA
CAGAAGAAATTCAGGATTCTCAAGAAACACTGTTGATGGAGTATTCACCG
GAAGACACATTGACTTTGCCAGGAGAGTCACCAAGCGAAGGCGCAGGAGC
TGAGCAAAGGTCATGCTCTTCAGGAGACGGTGCAGTCAATCAAGGACGAT
AA
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