prot_H-paniculata_contig6133.13842.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6133.13842.1
Unique Nameprot_H-paniculata_contig6133.13842.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length240
Homology
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: D7G8R0_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R0_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 3.290e-146
Identity = 205/240 (85.42%), Postives = 227/240 (94.58%), Query Frame = 0
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLHVDMNDPRPL 240
            IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMVTNMDRITHRKFESSFQLRY+D  KV +++QGIK ALK++PN+DLLSPFR+H V  AE+GLKI +VCYFATKSFDEFLYLQQ+ALLEVTRVV    ATMTSVL+VDMN+P P+
Sbjct:  145 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMTSVLYVDMNNPAPI 384          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A4D9D8J2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J2_9STRA)

HSP 1 Score: 301 bits (772), Expect = 6.120e-97
Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 0
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 234
            +P+L+ D+R+ +I +RS SV+ W + + S  E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+  +P+V+  IK AL+ +P VD+LSPFR+HF       L +T  CYFATKS DE+LYLQQ+AL+E+TRVV+ECG        H+D+
Sbjct:  124 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 358          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: W7UBI9_9STRA (Small-conductance mechanosensitive channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBI9_9STRA)

HSP 1 Score: 301 bits (772), Expect = 7.310e-95
Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 0
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 234
            +P+L+ D+R+ +I +RS SV+ W + + S  E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+  +P+V+  IK AL+ +P VD+LSPFR+HF       L +T  CYFATKS DE+LYLQQ+AL+E+TRVV+ECG        H+D+
Sbjct:  314 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A7S0SR49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR49_9STRA)

HSP 1 Score: 259 bits (661), Expect = 3.280e-82
Identity = 124/232 (53.45%), Postives = 166/232 (71.55%), Query Frame = 0
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLS-PFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLH 231
            +P L A++R+ ++  RS SV+ W + +L   E++S+YL++P++STLAFGG GGLA+GL+ +DV +NF GG++LL  EPF PGDMVTF+ G  +  GRVERVGW QTR+RGRDTRPTYVPN  F  T VTNM+RITHRKFE+   LRY D+A + DVV  IK  L+++P +D ++ PFR  FV +    L I + CYF+TKS DEFL LQQ A LE+ + V  C A++    H
Sbjct:   54 LPNLNANRRQSYVVQRSSSVILWVVGVLIACEMVSTYLKVPLSSTLAFGGFGGLALGLSARDVAANFLGGILLLFNEPFTPGDMVTFRSGNTELLGRVERVGWGQTRIRGRDTRPTYVPNSHFVQTAVTNMERITHRKFEAIVPLRYQDHAVMSDVVTKIKEGLRKIPKLDTMTQPFRCSFVKVGSYSLDIEVTCYFSTKSIDEFLPLQQAANLEIIKAVYSCNASLALPTH 285          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6U0TNP3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TNP3_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.850e-79
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 0
Query:    2 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGAT 225
            P L  DKR+ +I +RS SV  W I ++ + + IS++  +P++S+LA GG+GG+AIGLA KDV+SNF GGLMLL+ EPF PGD +TF   G    G+VERVGWYQTR+R RDTRP YVPN  F +TMVTNMDRITHRKFES F ++   +A+V  ++  IK AL+  P +DLLSPFR + +A+   GL+ +++CYFATKS DEFL LQQ   LEV R V   G T
Sbjct:  197 PKLAEDKRRAYIVDRSASVFFWTITIVLLLDQISTFFNVPLSSSLALGGVGGVAIGLASKDVVSNFVGGLMLLITEPFTPGDFITFLYQGQWMIGKVERVGWYQTRIRNRDTRPVYVPNAFFVNTMVTNMDRITHRKFESEFHIQLDSFAQVEGLLDDIKIALQGFPKLDLLSPFRANLIAVESDGLRFSVLCYFATKSLDEFLMLQQKVFLEVGRCVESRGLT 420          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6H5L1M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.680e-75
Identity = 120/163 (73.62%), Postives = 131/163 (80.37%), Query Frame = 0
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGK-------------------------------DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMD 132
            IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGK                               DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMV++ +
Sbjct:    3 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKEALFVACVGIHGPRSPPLRSSLAVVCSVAKKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVSSRE 165          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A835ZID6_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 9.860e-51
Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 0
Query:    2 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRIT 135
            P L+ D RK FIYNR+ SVLTW +  L + ++IS++L IP+ ST+AFGG GG+A G A K +  NFFGGL LLL+EPF+PGDMV F+ GG   EGRVERVGWYQTR+RGRDTRPTY+PN +F   +VTNMDRI+
Sbjct:  346 PELQNDMRKAFIYNRTTSVLTWTLVALGLLQVISAFLHIPLASTMAFGGAGGIAFGFAAKGIFENFFGGLTLLLSEPFVPGDMVHFEYGGEVMEGRVERVGWYQTRLRGRDTRPTYIPNNVFLSNLVTNMDRIS 479          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A2U2AKG0_9GAMM (Mechanosensitive ion channel protein MscS n=1 Tax=Ignatzschineria indica TaxID=472583 RepID=A0A2U2AKG0_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 3.860e-41
Identity = 87/234 (37.18%), Postives = 126/234 (53.85%), Query Frame = 0
Query:    6 ADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMND 236
            ADK    I  R L +  + I LL   E    +  + ++  + FGGIGG+AIG A KDVLSNFF G+ML    PF  GD +       K EG V+ +GW  T++   D RP Y+PN +F+   V N  R+T+R+  +   LRY D  KV  VV  I+  L++ P +DL     ++F A  E+ L I I C+  T  + E+L  QQ   L++  +V + GA     T +L++D N+
Sbjct:   48 ADKTSAKIITRVLKIAIFLIVLLLFGE----HFGLSLSGLMTFGGIGGIAIGFASKDVLSNFFSGVMLFFERPFNIGDWINSPDR--KIEGVVKEIGWRSTKIMTFDNRPLYIPNALFSSISVENPGRMTNRRINTEIGLRYEDADKVNAVVNDIRTMLQQNPKIDLTQTLLVYFNAFGESSLNIMIYCFTKTVKWAEWLEAQQEVYLKIIEIVHKNGADFADTTQLLYLDNNE 275          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6L5QRF6_9GAMM (Mechanosensitive ion channel n=1 Tax=Kangiella sp. HZ709 TaxID=2666328 RepID=A0A6L5QRF6_9GAMM)

HSP 1 Score: 152 bits (384), Expect = 1.060e-40
Identity = 84/222 (37.84%), Postives = 128/222 (57.66%), Query Frame = 0
Query:   17 SLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMN 235
            ++S L   I ++  + II   L IPI   L FGGIGG+A+G A KD+L+NFFGGLM+ L +PF  GD +  +    + EG VE +GW QTR+R  D RP YVPN  F +  V N  R+T+R+   S  LRY D+ KV  +V  +K  L++   +D  +   ++F   A + L   I  +  T+ + E+  ++Q  LL++  ++ + GA +   TS LH++ N
Sbjct:  144 AVSKLLRLIVIVISTLIIFQLLNIPIAGVLTFGGIGGVAVGFAAKDLLANFFGGLMIFLDKPFKVGDWI--RSPDKEIEGTVENIGWRQTRIRTFDKRPLYVPNATFTNISVENPSRMTNRRINESIGLRYDDWQKVETIVGKVKTMLQQHEEIDQTATLMVNFDKFAASSLDFFIYTFTKTRDWAEYHEIKQDVLLKIMNIIEQEGAEIAFPTSTLHMNTN 363          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A1D8K7W0_9GAMM (Mechanosensitive ion channel protein MscS n=2 Tax=Acidihalobacter aeolianus TaxID=2792603 RepID=A0A1D8K7W0_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 3.920e-40
Identity = 83/220 (37.73%), Postives = 122/220 (55.45%), Query Frame = 0
Query:   16 RSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHV 232
            ++L+ L     L++ S I    L   I+  LAFGGIGG+AIG A KD+L+NFFGGLML L  PF  GD ++     +  EG VE +GW  TR+R  D RP YVPN MFA   V N  R+THR+   +  +RY D A +  +VQ ++  L+   ++D      ++F    ++     I C+  T  + E+L ++Q  +LE+  +V   GA +   T  LH+
Sbjct:  124 KALARLLRVSVLITGSLIALQSLGFSISGVLAFGGIGGIAIGFAAKDILANFFGGLMLYLDRPFAVGDWISSPDRDI--EGTVEDIGWRLTRIRRFDKRPVYVPNSMFASMAVVNPSRMTHRRIYETVGIRYDDLAVLGRIVQAVETMLRARQDIDTEQTLMVYFNGFRDSSCDFMIYCFTRTTQWAEYLAVRQAVMLEIAEIVERYGAEIAFPTRTLHI 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8R0_ECTSI3.290e-14685.42Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A4D9D8J2_9STRA6.120e-9760.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBI9_9STRA7.310e-9560.43Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A7S0SR49_9STRA3.280e-8253.45Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6U0TNP3_9STRA1.850e-7955.80Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5L1M0_9PHAE2.680e-7573.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZID6_9STRA9.860e-5163.43Mechanosensitive ion channel-domain-containing pro... [more]
A0A2U2AKG0_9GAMM3.860e-4137.18Mechanosensitive ion channel protein MscS n=1 Tax=... [more]
A0A6L5QRF6_9GAMM1.060e-4037.84Mechanosensitive ion channel n=1 Tax=Kangiella sp.... [more]
A0A1D8K7W0_9GAMM3.920e-4037.73Mechanosensitive ion channel protein MscS n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006685Mechanosensitive ion channel MscSPFAMPF00924MS_channelcoord: 27..223
e-value: 5.6E-36
score: 124.0
IPR023408Mechanosensitive ion channel MscS domain superfamilyGENE3D2.30.30.60coord: 78..131
e-value: 3.0E-5
score: 25.7
NoneNo IPR availablePANTHERPTHR43634:SF2LOW CONDUCTANCE MECHANOSENSITIVE CHANNEL YNAIcoord: 20..225
NoneNo IPR availablePANTHERPTHR43634FAMILY NOT NAMEDcoord: 20..225
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..240
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 38..60
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR011014Mechanosensitive ion channel MscS, transmembrane-2SUPERFAMILY82861Mechanosensitive channel protein MscS (YggB), transmembrane regioncoord: 20..60
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 62..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6133contigH-paniculata_contig6133:222..2106 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6133.13842.1mRNA_H-paniculata_contig6133.13842.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6133 222..2106 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6133.13842.1 ID=prot_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp
IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGG
IGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVER
VGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDY
AKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKS
FDEFLYLQQIALLEVTRVVSECGATMTSVLHVDMNDPRPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006685MscS_channel
IPR023408MscS_dom_sf
IPR011014MscS_channel_TM-2
IPR010920LSM_dom_sf