mRNA_H-paniculata_contig6133.13842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6133.13842.1
Unique NamemRNA_H-paniculata_contig6133.13842.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: D7G8R0_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R0_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 3.290e-146
Identity = 205/240 (85.42%), Postives = 227/240 (94.58%), Query Frame = 1
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLHVDMNDPRPL 720
            IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMVTNMDRITHRKFESSFQLRY+D  KV +++QGIK ALK++PN+DLLSPFR+H V  AE+GLKI +VCYFATKSFDEFLYLQQ+ALLEVTRVV    ATMTSVL+VDMN+P P+
Sbjct:  145 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMTSVLYVDMNNPAPI 384          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A4D9D8J2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J2_9STRA)

HSP 1 Score: 301 bits (772), Expect = 6.120e-97
Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 1
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 702
            +P+L+ D+R+ +I +RS SV+ W + + S  E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+  +P+V+  IK AL+ +P VD+LSPFR+HF       L +T  CYFATKS DE+LYLQQ+AL+E+TRVV+ECG        H+D+
Sbjct:  124 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 358          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: W7UBI9_9STRA (Small-conductance mechanosensitive channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBI9_9STRA)

HSP 1 Score: 301 bits (772), Expect = 7.310e-95
Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 1
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 702
            +P+L+ D+R+ +I +RS SV+ W + + S  E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL  EPF PGDMV+F   G   EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+  +P+V+  IK AL+ +P VD+LSPFR+HF       L +T  CYFATKS DE+LYLQQ+AL+E+TRVV+ECG        H+D+
Sbjct:  314 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A7S0SR49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR49_9STRA)

HSP 1 Score: 259 bits (661), Expect = 3.280e-82
Identity = 124/232 (53.45%), Postives = 166/232 (71.55%), Query Frame = 1
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLS-PFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLH 693
            +P L A++R+ ++  RS SV+ W + +L   E++S+YL++P++STLAFGG GGLA+GL+ +DV +NF GG++LL  EPF PGDMVTF+ G  +  GRVERVGW QTR+RGRDTRPTYVPN  F  T VTNM+RITHRKFE+   LRY D+A + DVV  IK  L+++P +D ++ PFR  FV +    L I + CYF+TKS DEFL LQQ A LE+ + V  C A++    H
Sbjct:   54 LPNLNANRRQSYVVQRSSSVILWVVGVLIACEMVSTYLKVPLSSTLAFGGFGGLALGLSARDVAANFLGGILLLFNEPFTPGDMVTFRSGNTELLGRVERVGWGQTRIRGRDTRPTYVPNSHFVQTAVTNMERITHRKFEAIVPLRYQDHAVMSDVVTKIKEGLRKIPKLDTMTQPFRCSFVKVGSYSLDIEVTCYFSTKSIDEFLPLQQAANLEIIKAVYSCNASLALPTH 285          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6U0TNP3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TNP3_9STRA)

HSP 1 Score: 258 bits (659), Expect = 1.850e-79
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 1
Query:    4 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGAT 675
            P L  DKR+ +I +RS SV  W I ++ + + IS++  +P++S+LA GG+GG+AIGLA KDV+SNF GGLMLL+ EPF PGD +TF   G    G+VERVGWYQTR+R RDTRP YVPN  F +TMVTNMDRITHRKFES F ++   +A+V  ++  IK AL+  P +DLLSPFR + +A+   GL+ +++CYFATKS DEFL LQQ   LEV R V   G T
Sbjct:  197 PKLAEDKRRAYIVDRSASVFFWTITIVLLLDQISTFFNVPLSSSLALGGVGGVAIGLASKDVVSNFVGGLMLLITEPFTPGDFITFLYQGQWMIGKVERVGWYQTRIRNRDTRPVYVPNAFFVNTMVTNMDRITHRKFESEFHIQLDSFAQVEGLLDDIKIALQGFPKLDLLSPFRANLIAVESDGLRFSVLCYFATKSLDEFLMLQQKVFLEVGRCVESRGLT 420          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6H5L1M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.680e-75
Identity = 120/163 (73.62%), Postives = 131/163 (80.37%), Query Frame = 1
Query:    1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGK-------------------------------DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMD 396
            IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGK                               DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMV++ +
Sbjct:    3 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKEALFVACVGIHGPRSPPLRSSLAVVCSVAKKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVSSRE 165          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A835ZID6_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 9.860e-51
Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    4 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRIT 405
            P L+ D RK FIYNR+ SVLTW +  L + ++IS++L IP+ ST+AFGG GG+A G A K +  NFFGGL LLL+EPF+PGDMV F+ GG   EGRVERVGWYQTR+RGRDTRPTY+PN +F   +VTNMDRI+
Sbjct:  346 PELQNDMRKAFIYNRTTSVLTWTLVALGLLQVISAFLHIPLASTMAFGGAGGIAFGFAAKGIFENFFGGLTLLLSEPFVPGDMVHFEYGGEVMEGRVERVGWYQTRLRGRDTRPTYIPNNVFLSNLVTNMDRIS 479          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A2U2AKG0_9GAMM (Mechanosensitive ion channel protein MscS n=1 Tax=Ignatzschineria indica TaxID=472583 RepID=A0A2U2AKG0_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 3.860e-41
Identity = 87/234 (37.18%), Postives = 126/234 (53.85%), Query Frame = 1
Query:   16 ADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMND 708
            ADK    I  R L +  + I LL   E    +  + ++  + FGGIGG+AIG A KDVLSNFF G+ML    PF  GD +       K EG V+ +GW  T++   D RP Y+PN +F+   V N  R+T+R+  +   LRY D  KV  VV  I+  L++ P +DL     ++F A  E+ L I I C+  T  + E+L  QQ   L++  +V + GA     T +L++D N+
Sbjct:   48 ADKTSAKIITRVLKIAIFLIVLLLFGE----HFGLSLSGLMTFGGIGGIAIGFASKDVLSNFFSGVMLFFERPFNIGDWINSPDR--KIEGVVKEIGWRSTKIMTFDNRPLYIPNALFSSISVENPGRMTNRRINTEIGLRYEDADKVNAVVNDIRTMLQQNPKIDLTQTLLVYFNAFGESSLNIMIYCFTKTVKWAEWLEAQQEVYLKIIEIVHKNGADFADTTQLLYLDNNE 275          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6L5QRF6_9GAMM (Mechanosensitive ion channel n=1 Tax=Kangiella sp. HZ709 TaxID=2666328 RepID=A0A6L5QRF6_9GAMM)

HSP 1 Score: 152 bits (384), Expect = 1.060e-40
Identity = 84/222 (37.84%), Postives = 128/222 (57.66%), Query Frame = 1
Query:   49 SLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMN 705
            ++S L   I ++  + II   L IPI   L FGGIGG+A+G A KD+L+NFFGGLM+ L +PF  GD +  +    + EG VE +GW QTR+R  D RP YVPN  F +  V N  R+T+R+   S  LRY D+ KV  +V  +K  L++   +D  +   ++F   A + L   I  +  T+ + E+  ++Q  LL++  ++ + GA +   TS LH++ N
Sbjct:  144 AVSKLLRLIVIVISTLIIFQLLNIPIAGVLTFGGIGGVAVGFAAKDLLANFFGGLMIFLDKPFKVGDWI--RSPDKEIEGTVENIGWRQTRIRTFDKRPLYVPNATFTNISVENPSRMTNRRINESIGLRYDDWQKVETIVGKVKTMLQQHEEIDQTATLMVNFDKFAASSLDFFIYTFTKTRDWAEYHEIKQDVLLKIMNIIEQEGAEIAFPTSTLHMNTN 363          
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A1D8K7W0_9GAMM (Mechanosensitive ion channel protein MscS n=2 Tax=Acidihalobacter aeolianus TaxID=2792603 RepID=A0A1D8K7W0_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 3.920e-40
Identity = 83/220 (37.73%), Postives = 122/220 (55.45%), Query Frame = 1
Query:   46 RSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHV 696
            ++L+ L     L++ S I    L   I+  LAFGGIGG+AIG A KD+L+NFFGGLML L  PF  GD ++     +  EG VE +GW  TR+R  D RP YVPN MFA   V N  R+THR+   +  +RY D A +  +VQ ++  L+   ++D      ++F    ++     I C+  T  + E+L ++Q  +LE+  +V   GA +   T  LH+
Sbjct:  124 KALARLLRVSVLITGSLIALQSLGFSISGVLAFGGIGGIAIGFAAKDILANFFGGLMLYLDRPFAVGDWISSPDRDI--EGTVEDIGWRLTRIRRFDKRPVYVPNSMFASMAVVNPSRMTHRRIYETVGIRYDDLAVLGRIVQAVETMLRARQDIDTEQTLMVYFNGFRDSSCDFMIYCFTRTTQWAEYLAVRQAVMLEIAEIVERYGAEIAFPTRTLHI 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8R0_ECTSI3.290e-14685.42Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A4D9D8J2_9STRA6.120e-9760.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBI9_9STRA7.310e-9560.43Small-conductance mechanosensitive channel n=1 Tax... [more]
A0A7S0SR49_9STRA3.280e-8253.45Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6U0TNP3_9STRA1.850e-7955.80Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5L1M0_9PHAE2.680e-7573.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZID6_9STRA9.860e-5163.43Mechanosensitive ion channel-domain-containing pro... [more]
A0A2U2AKG0_9GAMM3.860e-4137.18Mechanosensitive ion channel protein MscS n=1 Tax=... [more]
A0A6L5QRF6_9GAMM1.060e-4037.84Mechanosensitive ion channel n=1 Tax=Kangiella sp.... [more]
A0A1D8K7W0_9GAMM3.920e-4037.73Mechanosensitive ion channel protein MscS n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6133contigH-paniculata_contig6133:222..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score146.0
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog1123502.AQXD01000003_gene1640
Preferred nameynaI
KEGG koko:K16052
KEGG TC1.A.23.4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0042802,GO:0044464,GO:0071944
EggNOG free text desc.Mechanosensitive ion channel
EggNOG OGs1MXD2@1224,1RNUB@1236,1X5AX@135614,COG0668@1,COG0668@2
Ec32 ortholog descriptionSmall Conductance Mechanosensitive Ion channel
Ec32 orthologEc-22_002670.1
COG Functional cat.M
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons4
Model size720
Cds size720
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6133.13842.1prot_H-paniculata_contig6133.13842.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6133 222..2106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.519779-CDS-H-paniculata_contig6133:221..4041622930690.519779-CDS-H-paniculata_contig6133:221..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 222..404 +
1691481407.7677505-CDS-H-paniculata_contig6133:221..4041691481407.7677505-CDS-H-paniculata_contig6133:221..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 222..404 +
1622930690.5539489-CDS-H-paniculata_contig6133:881..9761622930690.5539489-CDS-H-paniculata_contig6133:881..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 882..976 +
1691481407.781993-CDS-H-paniculata_contig6133:881..9761691481407.781993-CDS-H-paniculata_contig6133:881..976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 882..976 +
1622930690.5714478-CDS-H-paniculata_contig6133:1318..14771622930690.5714478-CDS-H-paniculata_contig6133:1318..1477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 1319..1477 +
1691481407.7940047-CDS-H-paniculata_contig6133:1318..14771691481407.7940047-CDS-H-paniculata_contig6133:1318..1477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 1319..1477 +
1622930690.5880487-CDS-H-paniculata_contig6133:1823..21061622930690.5880487-CDS-H-paniculata_contig6133:1823..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 1824..2106 +
1691481407.806417-CDS-H-paniculata_contig6133:1823..21061691481407.806417-CDS-H-paniculata_contig6133:1823..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6133 1824..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6133.13842.1

>prot_H-paniculata_contig6133.13842.1 ID=prot_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp
IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGG
IGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVER
VGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDY
AKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKS
FDEFLYLQQIALLEVTRVVSECGATMTSVLHVDMNDPRPL
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mRNA from alignment at H-paniculata_contig6133:222..2106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6133.13842.1 ID=mRNA_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-paniculata_contig6133:222..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACCTACCCTGAAGGCAGACAAGCGGAAGGGGTTCATCTACAACCGATC TTTGTCGGTTCTGACGTGGGCTATTTGCCTACTCTCCGTGTCGGAGATCA TCAGCAGTTACTTGCGGATACCCATCACCTCTACGTTGGCCTTCGGGGGT ATTGGAGGTCTCGCTATTGGTTTGGCAGGCAAAGTGAGCAAGATCTAGTG AGCTGGCGTGTGTCTACCAATGCTTTCACAATAGGAAACCAATATGCCGC AAATCGGACCGGGGTACGAACATTTCCTGAAGATGGTTGTTTCGAGAATG AAGATCTTACCAGGTCGAAAGAGCCTGATAGCCGCTAGATTTCCGCAAGA TTTTTCCAACAACACACCTTTTGTTGTCAGTGGCGCCGTACAGTACTTAG TACTTATCGAGATAACCGCTTTTAGTAAATGCTCGCACTCCCGCGTGCGA TAATCAAGGGTGTTGGCGATAGGTGCCGATTTCGAGATTGTGCGGATACA GTGGCCTGTACGTGGTGAAACTCGTCCCATGTTGAGAACATCCGTCGTGC TCACTGTTATTTATATGTGTTTGGATAGAAGTCACTGTAGCACAAGACAC AAGACATACCCGCTTCCCCACCCTAGCTTTCTCCATCGTACACTGCCCCA TGTATTTCAGGATGTGCTGTCTAACTTCTTTGGGGGGCTAATGCTTCTGC TCGCTGAGCCTTTCATCCCGGGAGACATGGTCACCTTCCAAAGAGGGGGG GTCAAGTGAGCTATTTGTTGTTGCTGTCTTATCGAGTTAAGAAGCCATAC GTGTAGCGTAGTCTACGAACTAGGCGTGTAGCCGTAGATTGCGGGGGTTC TACGAGGGGCGACCGCGAGGGTAGGTGTACCGTAGTAGTGAGTACAGCGT AATATTTTTTAGTTCTTGTCGCGTGTAGTATTCTCGACGACCCGGTATGG GATATCGCGTACAGTTATGGGCCGGTCCATAGAGGTAACAAACAGTTTGT ACTTACGGACTCTTGGAGCGCCAGAGAGGGTACAAAGTGCAATAGAAAGA ATCCAAAATGAAGGGACGACCGTTCGTCTGCTCATCACGTTGTGCAGGTG CGAAGGGCGTGTCGAACGTGTGGGCTGGTACCAGACCCGAATGCGGGGAA GGGACACACGTCCCACGTATGTGCCAAACGGCATGTTCGCGGATACCATG GTAACAAACATGGATCGGATAACCCACCGCAAATTTGAATCCAGCTTTCA GCTCAGGTACGTTGCAGGGACTTTTGCCCGTCAGGTCGGGTTATGGATGG CTAGGGTGGTACCGACGTTTTACTGTTGTACTGTTTTACGCAAGATTGAA TGTTACGTCAGGATCTCCACCTCTTTTGTATATGAGTACTGTATTGCGCA ACTACGATACAAAATATGTTTTTGGACCCTTTTCTTAAATCGGCGCATAA TATTTTCGCGAGCGAGTACCATTCCGGATTATTGGCGCAACACGGAGCTC TTGTTTATTACGGAATCCAGGGTTGTTGTTCTCCCATTGCACCGATCTTA TCTCCATCAACGAGGCCACTCCATGTATCTCTCTTGCTGTGATCACCGAC AGGTACTCCGACTACGCTAAAGTCCCGGACGTTGTTCAGGGAATTAAGGC TGCCCTCAAGGAAATGCCAAACGTCGACTTGTTGAGTCCGTTCCGCATAC ACTTCGTGGCGTTGGCGGAAACTGGACTGAAAATCACTATAGTCTGTTAC TTTGCTACCAAGAGTTTCGACGAGTTCCTCTACCTTCAGCAAATCGCGCT ACTGGAGGTCACTCGCGTGGTGAGCGAGTGTGGGGCCACCATGACATCGG TGCTGCACGTGGATATGAACGATCCTCGTCCGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6133:222..2106+

>mRNA_H-paniculata_contig6133.13842.1 ID=mRNA_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig6133:222..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACCTACCCTGAAGGCAGACAAGCGGAAGGGGTTCATCTACAACCGATC
TTTGTCGGTTCTGACGTGGGCTATTTGCCTACTCTCCGTGTCGGAGATCA
TCAGCAGTTACTTGCGGATACCCATCACCTCTACGTTGGCCTTCGGGGGT
ATTGGAGGTCTCGCTATTGGTTTGGCAGGCAAAATACCTACCCTGAAGGC
AGACAAGCGGAAGGGGTTCATCTACAACCGATCTTTGTCGGTTCTGACGT
GGGCTATTTGCCTACTCTCCGTGTCGGAGATCATCAGCAGTTACTTGCGG
ATACCCATCACCTCTACGTTGGCCTTCGGGGGTATTGGAGGTCTCGCTAT
TGGTTTGGCAGGCAAAGATGTGCTGTCTAACTTCTTTGGGGGGCTAATGC
TTCTGCTCGCTGAGCCTTTCATCCCGGGAGACATGGTCACCTTCCAAAGA
GGGGGGGTCAAGATGTGCTGTCTAACTTCTTTGGGGGGCTAATGCTTCTG
CTCGCTGAGCCTTTCATCCCGGGAGACATGGTCACCTTCCAAAGAGGGGG
GGTCAAGTGCGAAGGGCGTGTCGAACGTGTGGGCTGGTACCAGACCCGAA
TGCGGGGAAGGGACACACGTCCCACGTATGTGCCAAACGGCATGTTCGCG
GATACCATGGTAACAAACATGGATCGGATAACCCACCGCAAATTTGAATC
CAGCTTTCAGCTCAGGTGCGAAGGGCGTGTCGAACGTGTGGGCTGGTACC
AGACCCGAATGCGGGGAAGGGACACACGTCCCACGTATGTGCCAAACGGC
ATGTTCGCGGATACCATGGTAACAAACATGGATCGGATAACCCACCGCAA
ATTTGAATCCAGCTTTCAGCTCAGGTACTCCGACTACGCTAAAGTCCCGG
ACGTTGTTCAGGGAATTAAGGCTGCCCTCAAGGAAATGCCAAACGTCGAC
TTGTTGAGTCCGTTCCGCATACACTTCGTGGCGTTGGCGGAAACTGGACT
GAAAATCACTATAGTCTGTTACTTTGCTACCAAGAGTTTCGACGAGTTCC
TCTACCTTCAGCAAATCGCGCTACTGGAGGTCACTCGCGTGGTGAGCGAG
TGTGGGGCCACCATGACATCGGTGCTGCACGTGGATATGAACGATCCTCG
TCCGTTGGTACTCCGACTACGCTAAAGTCCCGGACGTTGTTCAGGGAATT
AAGGCTGCCCTCAAGGAAATGCCAAACGTCGACTTGTTGAGTCCGTTCCG
CATACACTTCGTGGCGTTGGCGGAAACTGGACTGAAAATCACTATAGTCT
GTTACTTTGCTACCAAGAGTTTCGACGAGTTCCTCTACCTTCAGCAAATC
GCGCTACTGGAGGTCACTCGCGTGGTGAGCGAGTGTGGGGCCACCATGAC
ATCGGTGCTGCACGTGGATATGAACGATCCTCGTCCGTTG
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