mRNA_H-paniculata_contig6133.13842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: D7G8R0_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R0_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 3.290e-146 Identity = 205/240 (85.42%), Postives = 227/240 (94.58%), Query Frame = 1
Query: 1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLHVDMNDPRPL 720
IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMVTNMDRITHRKFESSFQLRY+D KV +++QGIK ALK++PN+DLLSPFR+H V AE+GLKI +VCYFATKSFDEFLYLQQ+ALLEVTRVV ATMTSVL+VDMN+P P+
Sbjct: 145 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMTSVLYVDMNNPAPI 384
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A4D9D8J2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J2_9STRA) HSP 1 Score: 301 bits (772), Expect = 6.120e-97 Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 1
Query: 1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 702
+P+L+ D+R+ +I +RS SV+ W + + S E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL EPF PGDMV+F G EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+ +P+V+ IK AL+ +P VD+LSPFR+HF L +T CYFATKS DE+LYLQQ+AL+E+TRVV+ECG H+D+
Sbjct: 124 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 358
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: W7UBI9_9STRA (Small-conductance mechanosensitive channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBI9_9STRA) HSP 1 Score: 301 bits (772), Expect = 7.310e-95 Identity = 142/235 (60.43%), Postives = 183/235 (77.87%), Query Frame = 1
Query: 1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMT-SVLHVDM 702
+P+L+ D+R+ +I +RS SV+ W + + S E IS++L+IP++STLAFGGIGGLA GLA KDV+SNFFGG+MLL EPF PGDMV+F G EG+VERVG+YQTR+RGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D+ +P+V+ IK AL+ +P VD+LSPFR+HF L +T CYFATKS DE+LYLQQ+AL+E+TRVV+ECG H+D+
Sbjct: 314 VPSLQEDRRRSYIIDRSSSVVLWILAIFSCIECISAFLKIPLSSTLAFGGIGGLAFGLASKDVVSNFFGGVMLLFTEPFTPGDMVSFTTRGTHYEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDL 548
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A7S0SR49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR49_9STRA) HSP 1 Score: 259 bits (661), Expect = 3.280e-82 Identity = 124/232 (53.45%), Postives = 166/232 (71.55%), Query Frame = 1
Query: 1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLS-PFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATMTSVLH 693
+P L A++R+ ++ RS SV+ W + +L E++S+YL++P++STLAFGG GGLA+GL+ +DV +NF GG++LL EPF PGDMVTF+ G + GRVERVGW QTR+RGRDTRPTYVPN F T VTNM+RITHRKFE+ LRY D+A + DVV IK L+++P +D ++ PFR FV + L I + CYF+TKS DEFL LQQ A LE+ + V C A++ H
Sbjct: 54 LPNLNANRRQSYVVQRSSSVILWVVGVLIACEMVSTYLKVPLSSTLAFGGFGGLALGLSARDVAANFLGGILLLFNEPFTPGDMVTFRSGNTELLGRVERVGWGQTRIRGRDTRPTYVPNSHFVQTAVTNMERITHRKFEAIVPLRYQDHAVMSDVVTKIKEGLRKIPKLDTMTQPFRCSFVKVGSYSLDIEVTCYFSTKSIDEFLPLQQAANLEIIKAVYSCNASLALPTH 285
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6U0TNP3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TNP3_9STRA) HSP 1 Score: 258 bits (659), Expect = 1.850e-79 Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 1
Query: 4 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGAT 675
P L DKR+ +I +RS SV W I ++ + + IS++ +P++S+LA GG+GG+AIGLA KDV+SNF GGLMLL+ EPF PGD +TF G G+VERVGWYQTR+R RDTRP YVPN F +TMVTNMDRITHRKFES F ++ +A+V ++ IK AL+ P +DLLSPFR + +A+ GL+ +++CYFATKS DEFL LQQ LEV R V G T
Sbjct: 197 PKLAEDKRRAYIVDRSASVFFWTITIVLLLDQISTFFNVPLSSSLALGGVGGVAIGLASKDVVSNFVGGLMLLITEPFTPGDFITFLYQGQWMIGKVERVGWYQTRIRNRDTRPVYVPNAFFVNTMVTNMDRITHRKFESEFHIQLDSFAQVEGLLDDIKIALQGFPKLDLLSPFRANLIAVESDGLRFSVLCYFATKSLDEFLMLQQKVFLEVGRCVESRGLT 420
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6H5L1M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M0_9PHAE) HSP 1 Score: 234 bits (597), Expect = 2.680e-75 Identity = 120/163 (73.62%), Postives = 131/163 (80.37%), Query Frame = 1
Query: 1 IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGK-------------------------------DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMD 396
IP+LKADKRKGFIYNRSLSVLTW+ICLL+VSE+IS+YLRIPITSTLAFGGIGGLAIGLAGK DVLSNFFGGLMLLLAEPFIPGDMVTFQRGGV+CEGRVERVGWYQTR+RGRDTRPTYVPNGMF+DTMV++ +
Sbjct: 3 IPSLKADKRKGFIYNRSLSVLTWSICLLTVSEVISAYLRIPITSTLAFGGIGGLAIGLAGKEALFVACVGIHGPRSPPLRSSLAVVCSVAKKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVRCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVSSRE 165
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A835ZID6_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID6_9STRA) HSP 1 Score: 186 bits (472), Expect = 9.860e-51 Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 1
Query: 4 PTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRIT 405
P L+ D RK FIYNR+ SVLTW + L + ++IS++L IP+ ST+AFGG GG+A G A K + NFFGGL LLL+EPF+PGDMV F+ GG EGRVERVGWYQTR+RGRDTRPTY+PN +F +VTNMDRI+
Sbjct: 346 PELQNDMRKAFIYNRTTSVLTWTLVALGLLQVISAFLHIPLASTMAFGGAGGIAFGFAAKGIFENFFGGLTLLLSEPFVPGDMVHFEYGGEVMEGRVERVGWYQTRLRGRDTRPTYIPNNVFLSNLVTNMDRIS 479
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A2U2AKG0_9GAMM (Mechanosensitive ion channel protein MscS n=1 Tax=Ignatzschineria indica TaxID=472583 RepID=A0A2U2AKG0_9GAMM) HSP 1 Score: 152 bits (383), Expect = 3.860e-41 Identity = 87/234 (37.18%), Postives = 126/234 (53.85%), Query Frame = 1
Query: 16 ADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMND 708
ADK I R L + + I LL E + + ++ + FGGIGG+AIG A KDVLSNFF G+ML PF GD + K EG V+ +GW T++ D RP Y+PN +F+ V N R+T+R+ + LRY D KV VV I+ L++ P +DL ++F A E+ L I I C+ T + E+L QQ L++ +V + GA T +L++D N+
Sbjct: 48 ADKTSAKIITRVLKIAIFLIVLLLFGE----HFGLSLSGLMTFGGIGGIAIGFASKDVLSNFFSGVMLFFERPFNIGDWINSPDR--KIEGVVKEIGWRSTKIMTFDNRPLYIPNALFSSISVENPGRMTNRRINTEIGLRYEDADKVNAVVNDIRTMLQQNPKIDLTQTLLVYFNAFGESSLNIMIYCFTKTVKWAEWLEAQQEVYLKIIEIVHKNGADFADTTQLLYLDNNE 275
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A6L5QRF6_9GAMM (Mechanosensitive ion channel n=1 Tax=Kangiella sp. HZ709 TaxID=2666328 RepID=A0A6L5QRF6_9GAMM) HSP 1 Score: 152 bits (384), Expect = 1.060e-40 Identity = 84/222 (37.84%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 49 SLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHVDMN 705
++S L I ++ + II L IPI L FGGIGG+A+G A KD+L+NFFGGLM+ L +PF GD + + + EG VE +GW QTR+R D RP YVPN F + V N R+T+R+ S LRY D+ KV +V +K L++ +D + ++F A + L I + T+ + E+ ++Q LL++ ++ + GA + TS LH++ N
Sbjct: 144 AVSKLLRLIVIVISTLIIFQLLNIPIAGVLTFGGIGGVAVGFAAKDLLANFFGGLMIFLDKPFKVGDWI--RSPDKEIEGTVENIGWRQTRIRTFDKRPLYVPNATFTNISVENPSRMTNRRINESIGLRYDDWQKVETIVGKVKTMLQQHEEIDQTATLMVNFDKFAASSLDFFIYTFTKTRDWAEYHEIKQDVLLKIMNIIEQEGAEIAFPTSTLHMNTN 363
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Match: A0A1D8K7W0_9GAMM (Mechanosensitive ion channel protein MscS n=2 Tax=Acidihalobacter aeolianus TaxID=2792603 RepID=A0A1D8K7W0_9GAMM) HSP 1 Score: 150 bits (379), Expect = 3.920e-40 Identity = 83/220 (37.73%), Postives = 122/220 (55.45%), Query Frame = 1
Query: 46 RSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGIGGLAIGLAGKDVLSNFFGGLMLLLAEPFIPGDMVTFQRGGVKCEGRVERVGWYQTRMRGRDTRPTYVPNGMFADTMVTNMDRITHRKFESSFQLRYSDYAKVPDVVQGIKAALKEMPNVDLLSPFRIHFVALAETGLKITIVCYFATKSFDEFLYLQQIALLEVTRVVSECGATM---TSVLHV 696
++L+ L L++ S I L I+ LAFGGIGG+AIG A KD+L+NFFGGLML L PF GD ++ + EG VE +GW TR+R D RP YVPN MFA V N R+THR+ + +RY D A + +VQ ++ L+ ++D ++F ++ I C+ T + E+L ++Q +LE+ +V GA + T LH+
Sbjct: 124 KALARLLRVSVLITGSLIALQSLGFSISGVLAFGGIGGIAIGFAAKDILANFFGGLMLYLDRPFAVGDWISSPDRDI--EGTVEDIGWRLTRIRRFDKRPVYVPNSMFASMAVVNPSRMTHRRIYETVGIRYDDLAVLGRIVQAVETMLRARQDIDTEQTLMVYFNGFRDSSCDFMIYCFTRTTQWAEYLAVRQAVMLEIAEIVERYGAEIAFPTRTLHI 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6133.13842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6133.13842.1 >prot_H-paniculata_contig6133.13842.1 ID=prot_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=240bp IPTLKADKRKGFIYNRSLSVLTWAICLLSVSEIISSYLRIPITSTLAFGGback to top mRNA from alignment at H-paniculata_contig6133:222..2106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6133.13842.1 ID=mRNA_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-paniculata_contig6133:222..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6133:222..2106+ >mRNA_H-paniculata_contig6133.13842.1 ID=mRNA_H-paniculata_contig6133.13842.1|Name=mRNA_H-paniculata_contig6133.13842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at H-paniculata_contig6133:222..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |