mRNA_H-paniculata_contig61324.13841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61324.13841.1
Unique NamemRNA_H-paniculata_contig61324.13841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61324.13841.1 vs. uniprot
Match: A0A6H5K033_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K033_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.480e-12
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 ITVCLTSSVVIAQDHCIGVCESIRGELSSTDACAKARKILPRPKIGRVCQVGKGERSNI 177
            +T+C    V  A D C  +C+ I+ E+SS++ACAK+RK LPRPKIGRVCQ G  E  N+
Sbjct:   14 LTLCADGIVRSAGDQCSTICDLIKAEVSSSEACAKSRKSLPRPKIGRVCQEGFDEAFNL 72
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BLAST of mRNA_H-paniculata_contig61324.13841.1 vs. uniprot
Match: D7FTQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 ITVCLTSSVVIAQDHCIGVCESIRGELSSTDACAKARKILPRPKIGRVCQVGKGERSNI 177
            +T+C    V  A D C  +C+ I+ E+SS++ACAK+R+ LPRPKIGRVCQ G  E  N+
Sbjct:   14 LTLCADGIVRSAGDQCSTICDLIKAEVSSSEACAKSRRSLPRPKIGRVCQEGFDEAFNL 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61324.13841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K033_9PHAE6.480e-1252.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTQ9_ECTSI1.650e-1150.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61324contigH-paniculata_contig61324:468..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001180.1
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.4515731-CDS-H-paniculata_contig61324:467..6471622930690.4515731-CDS-H-paniculata_contig61324:467..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61324 468..647 +
1691481407.7562861-CDS-H-paniculata_contig61324:467..6471691481407.7562861-CDS-H-paniculata_contig61324:467..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61324 468..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61324.13841.1prot_H-paniculata_contig61324.13841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61324 468..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61324.13841.1

>prot_H-paniculata_contig61324.13841.1 ID=prot_H-paniculata_contig61324.13841.1|Name=mRNA_H-paniculata_contig61324.13841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
ITVCLTSSVVIAQDHCIGVCESIRGELSSTDACAKARKILPRPKIGRVCQ
VGKGERSNI*
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mRNA from alignment at H-paniculata_contig61324:468..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61324.13841.1 ID=mRNA_H-paniculata_contig61324.13841.1|Name=mRNA_H-paniculata_contig61324.13841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig61324:468..647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACTGTGTGCTTAACAAGCTCGGTGGTCATTGCACAGGACCACTGCAT
TGGAGTGTGCGAGTCAATTCGAGGTGAACTGTCGTCGACTGATGCCTGTG
CGAAGGCTCGCAAGATCCTGCCTCGACCGAAGATTGGCCGCGTTTGTCAG
GTGGGGAAGGGGGAAAGGAGTAATATATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig61324:468..647+

>mRNA_H-paniculata_contig61324.13841.1 ID=mRNA_H-paniculata_contig61324.13841.1|Name=mRNA_H-paniculata_contig61324.13841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig61324:468..647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCACTGTGTGCTTAACAAGCTCGGTGGTCATTGCACAGGACCACTGCAT
TGGAGTGTGCGAGTCAATTCGAGGTGAACTGTCGTCGACTGATGCCTGTG
CGAAGGCTCGCAAGATCCTGCCTCGACCGAAGATTGGCCGCGTTTGTCAG
GTGGGGAAGGGGGAAAGGAGTAATATATAGATCACTGTGTGCTTAACAAG
CTCGGTGGTCATTGCACAGGACCACTGCATTGGAGTGTGCGAGTCAATTC
GAGGTGAACTGTCGTCGACTGATGCCTGTGCGAAGGCTCGCAAGATCCTG
CCTCGACCGAAGATTGGCCGCGTTTGTCAGGTGGGGAAGGGGGAAAGGAG
TAATATATAG
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