mRNA_H-paniculata_contig61315.13839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61315.13839.1
Unique NamemRNA_H-paniculata_contig61315.13839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A836CH47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH47_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.230e-6
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    4 YDDQAFSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYCDDDFQP 177
            + + A+SVV   C  +QFSH+HEIGHN+G  HD G+ +A     Y+   RYC  +  P
Sbjct:  221 FREYAYSVVYGGCF-AQFSHIHEIGHNMGARHDVGNTDASATWPYAMGYRYCSGEVDP 277
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A1I0YIU1_9CELL (Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein n=2 Tax=Cellulomonas marina TaxID=988821 RepID=A0A1I0YIU1_9CELL)

HSP 1 Score: 53.1 bits (126), Expect = 1.290e-6
Identity = 24/48 (50.00%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:    1 GYDDQAFSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSH 144
            GY   AFSVV  +C  SQ+S  HE+GHN G  HDRGD     L  Y +
Sbjct:  443 GYAGLAFSVVARSCATSQYSFTHELGHNFGAAHDRGDWSGTPLADYGY 490
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.320e-6
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   19 FSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYC 159
            FS+V   C D+ FSH HEI HN+GC HDR + E  +   Y H  RYC
Sbjct:  472 FSLVGSNCFDN-FSHTHEIAHNMGCYHDRDNSETQD--EYRHGYRYC 515
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.530e-6
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   19 FSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYCD 162
            FS+V   C D+ FSH HEI HN+GC HD+ +  +D   +Y H  RYC+
Sbjct:  292 FSLVDSNCFDN-FSHTHEIAHNMGCYHDKNN--SDTQHAYRHGWRYCE 336
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A7W1VVG7_9BACT (Immunoglobulin domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VVG7_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 8.440e-6
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1 
Query:    4 YDDQAFSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRY 156
            ++  AFS V  TC    +S  HE+GHN+GC HDR +     L SYS+  R+
Sbjct:  305 FESHAFSTVHYTCATGYYSFGHELGHNMGCRHDRQNSSGSGLDSYSYGWRF 355
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.910e-5
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   19 FSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYC 159
            FS++   C  S ++  HEIGHNLGC HDR D+    +T+Y H  RYC
Sbjct:  338 FSLMDSICF-SNWTQTHEIGHNLGCRHDR-DNSNTGMTAYGHGLRYC 382
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: A0A836CMI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMI7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.050e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   19 FSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYCDD 165
            FSVV   CI S +SH+HEIGHN+GC H+  +     + SY    RYC+D
Sbjct:  358 FSVVYSDCIVS-YSHIHEIGHNMGCQHNAENSGDATMWSYGVGYRYCND 405
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BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)

HSP 1 Score: 47.4 bits (111), Expect = 8.200e-5
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 GYDDQAFSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHATRYC 159
            G  +  FS+V   C D+ FSH HEI HN+GC HDR +    +  ++ H  RYC
Sbjct:  125 GNAEYGFSLVGSNCFDN-FSHTHEIAHNMGCYHDRLNSGPQD--AFRHGYRYC 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61315.13839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CH47_9STRA1.230e-643.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1I0YIU1_9CELL1.290e-650.00Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchor... [more]
A0A6H5JF50_9PHAE3.320e-651.06LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE4.530e-647.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7W1VVG7_9BACT8.440e-643.14Immunoglobulin domain-containing protein n=1 Tax=V... [more]
D8LLU0_ECTSI2.910e-548.94PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CMI7_9STRA4.050e-548.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LMP2_ECTSI8.200e-543.40Peptidyl-Asp metallopeptidase. metallo peptidase. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61315contigH-paniculata_contig61315:453..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.3597643-CDS-H-paniculata_contig61315:452..6321622930690.3597643-CDS-H-paniculata_contig61315:452..632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61315 453..632 -
1691481407.7329636-CDS-H-paniculata_contig61315:452..6321691481407.7329636-CDS-H-paniculata_contig61315:452..632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61315 453..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61315.13839.1prot_H-paniculata_contig61315.13839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61315 453..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61315.13839.1

>prot_H-paniculata_contig61315.13839.1 ID=prot_H-paniculata_contig61315.13839.1|Name=mRNA_H-paniculata_contig61315.13839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
GYDDQAFSVVKPTCIDSQFSHVHEIGHNLGCLHDRGDHEADELTSYSHAT
RYCDDDFQP*
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mRNA from alignment at H-paniculata_contig61315:453..632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61315.13839.1 ID=mRNA_H-paniculata_contig61315.13839.1|Name=mRNA_H-paniculata_contig61315.13839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig61315:453..632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTATGACGACCAGGCCTTTTCTGTAGTAAAACCTACATGTATCGACAG
CCAGTTTTCACATGTGCACGAGATTGGTCACAACTTGGGCTGCCTCCACG
ACCGTGGCGATCATGAGGCCGACGAACTAACATCCTACTCCCACGCCACA
AGATACTGCGACGACGACTTCCAACCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig61315:453..632-

>mRNA_H-paniculata_contig61315.13839.1 ID=mRNA_H-paniculata_contig61315.13839.1|Name=mRNA_H-paniculata_contig61315.13839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig61315:453..632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTATGACGACCAGGCCTTTTCTGTAGTAAAACCTACATGTATCGACAG
CCAGTTTTCACATGTGCACGAGATTGGTCACAACTTGGGCTGCCTCCACG
ACCGTGGCGATCATGAGGCCGACGAACTAACATCCTACTCCCACGCCACA
AGATACTGCGACGACGACTTCCAACCGTGAGGGTATGACGACCAGGCCTT
TTCTGTAGTAAAACCTACATGTATCGACAGCCAGTTTTCACATGTGCACG
AGATTGGTCACAACTTGGGCTGCCTCCACGACCGTGGCGATCATGAGGCC
GACGAACTAACATCCTACTCCCACGCCACAAGATACTGCGACGACGACTT
CCAACCGTGA
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