mRNA_H-paniculata_contig6130.13838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6130.13838.1
Unique NamemRNA_H-paniculata_contig6130.13838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6130.13838.1 vs. uniprot
Match: A0A6H5JPM1_9PHAE (PfkB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPM1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.300e-28
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 3 
Query:  360 RLSPAPVDAINPIGAGDATAAATLYEWTRGVPLPEAFRRGLSAGGASCVSRDPLCNSCFSVEEADRLLDDVKLEKITK 593
            R++PAPVDA+NPIGAGDA AAATLYEWTRG  LPEAFRR LS GGA+C SR+P+CNS FS+EEA  LL DV+LE+I +
Sbjct:  335 RVTPAPVDAVNPIGAGDAVAAATLYEWTRGEELPEAFRRALSVGGATCTSRNPVCNSYFSIEEARGLLPDVRLEQIRR 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6130.13838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPM1_9PHAE3.300e-2873.08PfkB domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6130contigH-paniculata_contig6130:4523..5693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1171
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6130.13838.1prot_H-paniculata_contig6130.13838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6130 4873..5124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.2904108-UTR-H-paniculata_contig6130:4522..48721622930690.2904108-UTR-H-paniculata_contig6130:4522..4872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6130 4523..4872 +
1691481407.6995697-UTR-H-paniculata_contig6130:4522..48721691481407.6995697-UTR-H-paniculata_contig6130:4522..4872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6130 4523..4872 +
1622930690.316644-UTR-H-paniculata_contig6130:5124..56931622930690.316644-UTR-H-paniculata_contig6130:5124..5693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6130 5125..5693 +
1691481407.7223616-UTR-H-paniculata_contig6130:5124..56931691481407.7223616-UTR-H-paniculata_contig6130:5124..5693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6130 5125..5693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930690.3035874-CDS-H-paniculata_contig6130:4872..51241622930690.3035874-CDS-H-paniculata_contig6130:4872..5124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6130 4873..5124 +
1691481407.7120159-CDS-H-paniculata_contig6130:4872..51241691481407.7120159-CDS-H-paniculata_contig6130:4872..5124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6130 4873..5124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6130.13838.1

>prot_H-paniculata_contig6130.13838.1 ID=prot_H-paniculata_contig6130.13838.1|Name=mRNA_H-paniculata_contig6130.13838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MLHRLSPAPVDAINPIGAGDATAAATLYEWTRGVPLPEAFRRGLSAGGAS
CVSRDPLCNSCFSVEEADRLLDDVKLEKITKNT*
back to top

mRNA from alignment at H-paniculata_contig6130:4523..5693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6130.13838.1 ID=mRNA_H-paniculata_contig6130.13838.1|Name=mRNA_H-paniculata_contig6130.13838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-paniculata_contig6130:4523..5693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCCGGGGCATATAGAATACACGAGCTCCTTCTGAAACTCAGGCGACT
ACTTTTTCGTTTTCGTGGCGAATACGCCGAATATTCGTATTTGTCCGGGG
GTTGGTCGCCTGATAAAGAGTAAGTCAGAATTGCCAACTAAACTCACTGA
GGTTTCGAGTACATAGTGTCTTTATCAGGTCGGCAGTACAAGGCAAGCGA
ATTTTCGTTGTTTCGTATGTATGCATATGATGCTTGTTGCTGCCTTTTCT
GTGTCGCAGTGTTTTGGTCTTTTTTCGCCAGTACGTACGTGTTTTCGATG
CATCGTTGCTCAGACGCGTGGGCTTAGTTGCTCATTTTTGTTTTTTTGTA
ATGCTGCACAGGTTAAGCCCCGCTCCCGTGGACGCGATTAACCCGATCGG
GGCGGGAGATGCAACGGCGGCTGCCACTCTGTACGAGTGGACGCGCGGTG
TTCCTCTGCCCGAGGCGTTCAGAAGAGGGCTGTCGGCGGGGGGGGCTTCT
TGTGTTAGTCGGGACCCCCTCTGCAATTCCTGCTTTTCCGTGGAGGAGGC
CGATCGCCTTTTGGACGACGTTAAGCTGGAGAAGATAACGAAAAACACAT
AGTATAATAGTAACGAAGAAGCTTCTCCCCTCCCCCGGGGAGGGTTAGCT
CTTTGACGGTGTTGAAGAACGTAGTTTTAGAGGTCCTTTTCAGGAGGAAG
AGAGAATCAATCGCACGCGGTGATAATCAGGTGAAGATGACTGGTAACCC
ATATGGGTTGGTTTGGACACAATTGGATTATGATTTCCTCTCTAAGCGGT
CGGTCCAGGTGATTTAGCCTATACTTGTAGTTGTGTTGCCAAATGGTGTT
ATCGTACAGTTTTTCAGCGTCAAAAGTAGAGCTCTAGAGCTTTATGTCCT
TTACTTTGAGTAAATTTGTAAAAATTAGTGTGGGGAAAGTGAACGAGTCG
TGGTGGGCTCTGCTCCGGAAAAAGAAAAAAGGCTGGAAAAGAACGACCCA
TGTTTCGAATATCTGGCTAAGGAGACTTGGAGTTTATGCTGGTGTTGTCA
TTAGTTTTCGATTAGCGAAATGGCTTCATTAATGACTTTTACGCGTAGTA
GGCTATGACCACTCGTGCAGTCATAATCTAGGGCTTCGTTCTCGACCCAC
GCAGAAGGACTCGCTGCGCTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6130:4523..5693+

>mRNA_H-paniculata_contig6130.13838.1 ID=mRNA_H-paniculata_contig6130.13838.1|Name=mRNA_H-paniculata_contig6130.13838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig6130:4523..5693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCACAGGTTAAGCCCCGCTCCCGTGGACGCGATTAACCCGATCGG
GGCGGGAGATGCAACGGCGGCTGCCACTCTGTACGAGTGGACGCGCGGTG
TTCCTCTGCCCGAGGCGTTCAGAAGAGGGCTGTCGGCGGGGGGGGCTTCT
TGTGTTAGTCGGGACCCCCTCTGCAATTCCTGCTTTTCCGTGGAGGAGGC
CGATCGCCTTTTGGACGACGTTAAGCTGGAGAAGATAACGAAAAACACAT
AGATGCTGCACAGGTTAAGCCCCGCTCCCGTGGACGCGATTAACCCGATC
GGGGCGGGAGATGCAACGGCGGCTGCCACTCTGTACGAGTGGACGCGCGG
TGTTCCTCTGCCCGAGGCGTTCAGAAGAGGGCTGTCGGCGGGGGGGGCTT
CTTGTGTTAGTCGGGACCCCCTCTGCAATTCCTGCTTTTCCGTGGAGGAG
GCCGATCGCCTTTTGGACGACGTTAAGCTGGAGAAGATAACGAAAAACAC
ATAG
back to top