mRNA_H-paniculata_contig613.13834.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.140e-39 Identity = 104/247 (42.11%), Postives = 134/247 (54.25%), Query Frame = 2
Query: 62 AVHAAFTAASTVLSQLKDTLACAYLILEQSPRDHH-DAEDEEDGPQPKKQRRMYVRPLYSESAWGRML---QSPDLTDSNSRDAHCFRRRFRIPYPFFVEL--------------------------MKVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVT 712
A A A+ L QL+ ++A +I+E D D ED+E + K+ RR+YVR Y++S W + L + TD +R+A FR FR+PYPFFV L +KVLA L IL RG F DI +S IS T S FH FCK FA + + E + LPTG+ L M+ YD +GF GAVGST VTHI G P + +YTG EG PT+A++ TVDHSGRV VT
Sbjct: 47 AAFATTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKR-RRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVT 292
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 152 bits (385), Expect = 3.760e-36 Identity = 102/249 (40.96%), Postives = 128/249 (51.41%), Query Frame = 2
Query: 65 VHAAFTAASTVLSQLKD-TLACAYLILEQSPRDHHDAEDEEDGPQPKKQRRMYVRPLYSESAWGRMLQS------PDLTDSNSRDAHCFRRRFRIPYPFFVEL--------------------------MKVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVT 712
V AAF+ A +Q + TL L+L+ D+E+EE+ + K+RR+Y R Y+ S W LQ + D SR A FR FR+PYPFFVEL +KVLA L IL RG F DI +S IS TA + FH F + FA + + E I LPTGD M YD +GF+GA GST VTHI G P + YTG EG PT+AY+ TVDH+ RV VT
Sbjct: 28 VPAAFSVALAAFNQQQQRTLVAWDLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVT 276
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 149 bits (377), Expect = 5.380e-36 Identity = 90/204 (44.12%), Postives = 114/204 (55.88%), Query Frame = 2
Query: 167 DAEDEED--GPQPKKQRRMYVRPLYSESAWGRMLQSPDLTDSNSRDAHCFRRRFRIPYPFFVELMKVLAS--------------------LHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVT 712
D+EDEE+ GP+ K+ RR+ R + SAW LQ DL D + A FR RFR+PYPFF EL+K+ + L +L +G FDD+ QLS +SES AQ+ FH FC+ A + F E I LPTG L M + +G TGA GST VTHI P + +TG EG PT+AYE TVDH+GR VT
Sbjct: 47 DSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVT 250
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 8.980e-32 Identity = 84/207 (40.58%), Postives = 107/207 (51.69%), Query Frame = 2
Query: 176 DEEDGPQPKKQRRMYVRPLYSESAWGRMLQSPD--LTDSNSRDAHCFRRRFRIPYPFFVELMKVLAS-------------------------LHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVTE 715
D + P K++R +Y RP Y SAW ML+ + L D ++DA FRRRFR+PYP F+EL+K + S L +L RG FDDI QLS ISE T Q FH F +RFA +FF + +K P G L ++ Y VGF G GS THI P S H Y G EG T+A+E DH R GV++
Sbjct: 45 DATEEPSAKRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVLGRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSK 251
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.270e-27 Identity = 78/181 (43.09%), Postives = 95/181 (52.49%), Query Frame = 2
Query: 257 MLQSPDLTDSNSRDAHCFRRRFRIPYPFFVELM--------------------------KVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDA--LAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVTE 715
+L+ DL DS S A R FR+PY F+ L+ KVLA L IL RG F I Q+S +S T Q FH FC+ FA + + E I LPT ++ L MK YD +GFTGAVGS VTHIA P + YTG EG PT+AY+ TVDH+GR VTE
Sbjct: 26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTE 206
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.170e-27 Identity = 77/188 (40.96%), Postives = 97/188 (51.60%), Query Frame = 2
Query: 236 SESAWGRMLQSPDLTDSNSRDAHCFRRRFRIPYPFFVELM--------------------------KVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGD--ALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVTE 715
S AW ++L+ DL D S A FR FR+PYPFF+ L+ KVLA L IL RG F I LS +S T Q FH FC+ FA + + E I LP+ + L M Y+ +GF GA+GST VTHI P + YTG EG PT+ Y+ TV+H+GRV VTE
Sbjct: 61 STCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTE 248
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 124 bits (312), Expect = 4.760e-27 Identity = 64/119 (53.78%), Postives = 77/119 (64.71%), Query Frame = 2
Query: 356 KVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVT 712
+VLA L IL RG F DI +S IS T S FH FCK FA + + E + LPTG+ L M+ YD +GF GAVGST VTHI G P + +YTG EG PT+A++ TVDHSGRV VT
Sbjct: 83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVT 201
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.530e-26 Identity = 73/196 (37.24%), Postives = 98/196 (50.00%), Query Frame = 2
Query: 197 PKKQRRMYVRPLYSESAWGRMLQSPDLT-DSNSRDAHCFRRRFRIPYPFFVELM-------------------------------KVLASLHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDH 688
PK++R + R Y W RML+ DL D ++R+A FRRRFR+PYPFF+ L+ KVLA L IL RG FDD+ +++ + E+T FH F +RFA +FF +++P D L MK YD VG +GA+GS THI P S + G EG TL + V H
Sbjct: 49 PKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSH 244
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE) HSP 1 Score: 119 bits (298), Expect = 3.560e-25 Identity = 78/212 (36.79%), Postives = 105/212 (49.53%), Query Frame = 2
Query: 176 DEEDG--PQPKKQRRMYVRPLYSESA--WGRMLQSPDLT-DSNSRDAHCFRRRFRIPYPFFVELMKVLAS----------------------------LHILQRGTSFDDIGQLSLISESTAQSAFHIFCKRFAEDFFHE*IKLPTGDALAATMKAYDAVGFTGAVGSTAVTHIA*GGTPASHTHLYTGNEGSPTLAYEATVDHSGRVFGVT 712
+EEDG +P+ + R VRP + A W RML+ DL D ++R+A FRRRFR+PYPFF+ L+ + + L IL RG FDD+ +++ + E+T FH F RFA +FF +++P D L MK YD VG TGA+GS TH+ P S + G EG TL Y V H RV T
Sbjct: 4 EEEDGCDEEPRPKCRRTVRPRADDRALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDVLRILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSHVGKEGYATLVYNVAVSHDMRVLSCT 215
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.490e-25 Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 1500 PGKEAATREGLAWTKRLEIVRKDVECFFGILKGRFRILKLPILFRESAQVDNVVWTCCILHNMLHSFDGLKLHEPDMDRAGPDSLLDAWLHE 1775
P K A E A+++ LE VRKDVECFFGILKGRFRILKL + +R +DN+ TCCILHNMLH+FDG+ + E D+D G L D W H+
Sbjct: 8 PSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHD 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig613.13834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig613.13834.1 >prot_H-paniculata_contig613.13834.1 ID=prot_H-paniculata_contig613.13834.1|Name=mRNA_H-paniculata_contig613.13834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp MYVRPLYSESAWGRMLQSPDLTDSNSRDAHCFRRRFRIPYPFFVELMKVLback to top mRNA from alignment at H-paniculata_contig613:942..4311- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig613.13834.1 ID=mRNA_H-paniculata_contig613.13834.1|Name=mRNA_H-paniculata_contig613.13834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3370bp|location=Sequence derived from alignment at H-paniculata_contig613:942..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig613:942..4311- >mRNA_H-paniculata_contig613.13834.1 ID=mRNA_H-paniculata_contig613.13834.1|Name=mRNA_H-paniculata_contig613.13834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig613:942..4311- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |