mRNA_H-paniculata_contig613.13836.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig613.13836.1
Unique NamemRNA_H-paniculata_contig613.13836.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig613.13836.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.570e-17
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:   43 KGGMVD---WPKLARGVRFEGLSGTVELDENGDRKGMDVAFWYLQDQTFEGVSYLSGSEAARYSSATGKIQLLRQIPWAAGQVSDATSPXXXXXXXXXXXXXXXVTVDGGDRRRASPNMAHIG 402
            +GGMV    W  LA GV FEGLSG +E+D+ G+RKGMDV+F  ++  T  G+S++SG EAARY SA+  +QLLRQ+ W A   +    P                  DGG RR  S   + +G
Sbjct:  457 RGGMVGDGGWAGLAAGVGFEGLSGKLEMDDLGNRKGMDVSFRLMEGVTAYGISFVSGKEAARYDSASETVQLLRQMQWPASLSAVTACPGALP--------------DGGGRRPPSRTQSTLG 565
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BLAST of mRNA_H-paniculata_contig613.13836.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.790e-16
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   28 GQRHSKGGMVDWPKLARGVRFEGLSGTVELDENGDRKGMDVAFWYLQDQTFEGVSYLSGSEAARYSSATGKIQLLRQIPWAA 273
            G+R  + G   W  LA GV FEGLSG VE+D+ G+R GMDV+F  ++  T +G SY+SG EAARY SA+  +QLLR + W A
Sbjct:  473 GRRVGRVGDGGWAGLAAGVGFEGLSGKVEMDDLGNRMGMDVSFRLMEGVTADGASYVSGKEAARYDSASETVQLLRHMQWPA 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig613.13836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK37_9PHAE1.570e-1742.28Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN78_ECTSI1.790e-1652.44Tyrosine kinase specific for activated (GTP-bound)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig613contigH-paniculata_contig613:18330..20570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons3
Model size671
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig613.13836.1prot_H-paniculata_contig613.13836.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig613 18330..20569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.6552534-CDS-H-paniculata_contig613:18329..184371622930689.6552534-CDS-H-paniculata_contig613:18329..18437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 18330..18437 +
1691481407.3914692-CDS-H-paniculata_contig613:18329..184371691481407.3914692-CDS-H-paniculata_contig613:18329..18437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 18330..18437 +
1622930689.6726182-CDS-H-paniculata_contig613:19117..192551622930689.6726182-CDS-H-paniculata_contig613:19117..19255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 19118..19255 +
1691481407.4059105-CDS-H-paniculata_contig613:19117..192551691481407.4059105-CDS-H-paniculata_contig613:19117..19255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 19118..19255 +
1622930689.689778-CDS-H-paniculata_contig613:20146..205691622930689.689778-CDS-H-paniculata_contig613:20146..20569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 20147..20569 +
1691481407.4135752-CDS-H-paniculata_contig613:20146..205691691481407.4135752-CDS-H-paniculata_contig613:20146..20569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig613 20147..20569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig613.13836.1

>prot_H-paniculata_contig613.13836.1 ID=prot_H-paniculata_contig613.13836.1|Name=mRNA_H-paniculata_contig613.13836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
EIEGDEGGRGQRHSKGGMVDWPKLARGVRFEGLSGTVELDENGDRKGMDV
AFWYLQDQTFEGVSYLSGSEAARYSSATGKIQLLRQIPWAAGQVSDATSP
PSSSAAAAAAVAAEAVTVDGGDRRRASPNMAHIGLTTATGTTTTPLGGGP
SWLWFTTANGFLLLLAVCLVLPFAVGMVAFRFVFVAMQSTVATAAATATV
AATAFSAAPQQTAIEERGRRNGV
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mRNA from alignment at H-paniculata_contig613:18330..20570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig613.13836.1 ID=mRNA_H-paniculata_contig613.13836.1|Name=mRNA_H-paniculata_contig613.13836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2241bp|location=Sequence derived from alignment at H-paniculata_contig613:18330..20570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATTGAAGGGGACGAGGGAGGAAGGGGGCAGCGCCACAGTAAGGGAGG
GATGGTTGATTGGCCCAAGCTAGCACGGGGCGTGAGGTTTGAAGGACTCT
CTGGGACGGTGAGTTTTGTTTTAGGTCTCTTTTTCTCAGTTTGTCCACGT
ACGTCATGCTCCAAGAGGCGTTATTGTTCCTGTGTGAAGATTCGAGTCCT
TATCATACTGGCTATAGTAGGGATATGTCTCGTGCTTTCATATATATTGC
AACGAAGATTCAAGTGTTGACTTGTTAGTTCACAGCTCGGACGAAGGTTT
GATTTTGAAGTAATCAACACGCAACGGAACCGTCATCCCTTGATGCTCAA
AAGTAGAGGTATCCATGGAGGTGTGGTGGCACGCAAAAGTCGAACACTCC
TCGAAGGTGTGCAGGATATCCATGCTATCGATTTGTGGGTTTCGGAAGGC
ACCAGGTATCCTCGTACTGGTATAGTGCCAAAACCCGCGATATCCGTCAT
CGACTCTGTTGTGTTCAAGGACATGTAAAAATACGTTGGTAAAATACTTG
AGTATGGAAGCATGGGTAAAGGTTTTTGCCTCAGCCTTCTGGGGTTTAAA
AAAAAAAAAATGCTTCATCGACGGTTGAAGGACCTTCGTTCGAGCTGTGG
ACTAGTTTACAGGACGCTGCACAAACACCATGATCTACGGTTGATATTTT
ACTGACGGGTTTCTTTTAGCGCATTTTTTTTTTTTTTCCGTTTGTTTTGT
CTTGGTAATTATGTGGTGTTTTGTGTCTGGCGCTGCAGGTTGAGCTTGAT
GAGAATGGAGACCGAAAGGGAATGGATGTTGCTTTCTGGTACCTGCAAGA
CCAAACCTTTGAAGGCGTTTCATACTTATCGGGCTCCGAAGCGGCGAGAT
ACTCGAGCGCGACAGGAAAGATTCAGGTATACAAACTGTGTTTTGCTTCA
TGCAGTGGAAAGATCTTCCATGCACGTGTTTGGTGCGTCGTATCATTCGC
GGATCGTGTGGGTCATTTGTATTGTGATCGATCGCAGTAACCCGTCGATC
TTAAGTTCGAGCCATGCATGTTTTTGCTCACAACTGACCCGTGTCAGCTA
TGCCTTTCGTACTCTTGTCATTGTCAAGTATGTTTCATACCGTGTGGATC
GTGAGCACAGGTTTAGTCCACGGCTGAGAAGTACCCACATGTCTTGTTCT
AAAGACCTGATGTACAAAGAATATGGTGTAGGAAATTTCTAAGATCATGG
CTTATGCCACCGACATTTTGTTGTGGTGTGGAATTAGGTATCCCCAGTGC
GGCTCAATTGTTTTCATACAAGTTTTTGTTCATGGCTATGAGCCCCCCCG
CCCCCTCTTTTGATTTGATCAGTCTGTAAAATTATATGCTTACTATTAAT
AGTGCTGAAATAACGGAATCTGCCTCCCACTTTTATGCTTATTCGGTGTT
TTCTATTTGTATCCCCACCCCCGTCCCCCGTGATCCGGTCGGTTCATGTA
GAAGCAACTCACTCAGCAGTCCTGGATGGAATTGGCATACCTCGAAATTT
GACCCATGGATGTTGACATATTTTCTATTTGTACTACTATACTGTATCTT
TATACACTGTAATCGTTCAAACCATATTTCCCTGTACGTTGTCGTTGATA
CCCTGTGCCCTGTTGTTGAAATCGTCTTTGCCAGAAGGCATTCTTGCCTT
TGTTTTTTGTCATATGATAACCGAAGTGATGTCAAGGGTTCCTTCTCTCA
AGTTTGGCATAGTTCTATACTCTTACCTTCCCCCCCCAACCCCCTCTTCC
CCCAACGCGTGTTGCAGTTACTACGACAGATACCGTGGGCGGCCGGACAA
GTCTCGGACGCCACATCACCACCATCATCATCAGCAGCAGCAGCAGCAGC
AGTTGCGGCTGAGGCCGTCACCGTCGACGGGGGGGACCGACGACGAGCAT
CGCCCAACATGGCCCACATTGGACTCACCACCGCTACCGGCACCACCACT
ACTCCTCTGGGAGGCGGGCCTTCGTGGTTGTGGTTCACGACGGCAAACGG
CTTCCTGCTCTTGTTGGCGGTTTGCCTCGTCCTACCGTTTGCGGTGGGGA
TGGTTGCCTTCCGGTTTGTGTTTGTGGCCATGCAGAGTACCGTGGCGACG
GCGGCGGCTACTGCTACTGTTGCCGCTACTGCTTTTTCTGCCGCACCGCA
ACAAACGGCCATCGAGGAGCGTGGGAGGAGGAATGGGGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig613:18330..20570+

>mRNA_H-paniculata_contig613.13836.1 ID=mRNA_H-paniculata_contig613.13836.1|Name=mRNA_H-paniculata_contig613.13836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig613:18330..20570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATTGAAGGGGACGAGGGAGGAAGGGGGCAGCGCCACAGTAAGGGAGG
GATGGTTGATTGGCCCAAGCTAGCACGGGGCGTGAGGTTTGAAGGACTCT
CTGGGACGGAAATTGAAGGGGACGAGGGAGGAAGGGGGCAGCGCCACAGT
AAGGGAGGGATGGTTGATTGGCCCAAGCTAGCACGGGGCGTGAGGTTTGA
AGGACTCTCTGGGACGGTTGAGCTTGATGAGAATGGAGACCGAAAGGGAA
TGGATGTTGCTTTCTGGTACCTGCAAGACCAAACCTTTGAAGGCGTTTCA
TACTTATCGGGCTCCGAAGCGGCGAGATACTCGAGCGCGACAGGAAAGAT
TCAGGTTGAGCTTGATGAGAATGGAGACCGAAAGGGAATGGATGTTGCTT
TCTGGTACCTGCAAGACCAAACCTTTGAAGGCGTTTCATACTTATCGGGC
TCCGAAGCGGCGAGATACTCGAGCGCGACAGGAAAGATTCAGTTACTACG
ACAGATACCGTGGGCGGCCGGACAAGTCTCGGACGCCACATCACCACCAT
CATCATCAGCAGCAGCAGCAGCAGCAGTTGCGGCTGAGGCCGTCACCGTC
GACGGGGGGGACCGACGACGAGCATCGCCCAACATGGCCCACATTGGACT
CACCACCGCTACCGGCACCACCACTACTCCTCTGGGAGGCGGGCCTTCGT
GGTTGTGGTTCACGACGGCAAACGGCTTCCTGCTCTTGTTGGCGGTTTGC
CTCGTCCTACCGTTTGCGGTGGGGATGGTTGCCTTCCGGTTTGTGTTTGT
GGCCATGCAGAGTACCGTGGCGACGGCGGCGGCTACTGCTACTGTTGCCG
CTACTGCTTTTTCTGCCGCACCGCAACAAACGGCCATCGAGGAGCGTGGG
AGGAGGAATGGGGTCTTACTACGACAGATACCGTGGGCGGCCGGACAAGT
CTCGGACGCCACATCACCACCATCATCATCAGCAGCAGCAGCAGCAGCAG
TTGCGGCTGAGGCCGTCACCGTCGACGGGGGGGACCGACGACGAGCATCG
CCCAACATGGCCCACATTGGACTCACCACCGCTACCGGCACCACCACTAC
TCCTCTGGGAGGCGGGCCTTCGTGGTTGTGGTTCACGACGGCAAACGGCT
TCCTGCTCTTGTTGGCGGTTTGCCTCGTCCTACCGTTTGCGGTGGGGATG
GTTGCCTTCCGGTTTGTGTTTGTGGCCATGCAGAGTACCGTGGCGACGGC
GGCGGCTACTGCTACTGTTGCCGCTACTGCTTTTTCTGCCGCACCGCAAC
AAACGGCCATCGAGGAGCGTGGGAGGAGGAATGGGGTC
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