mRNA_H-paniculata_contig6129.13831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6129.13831.1
Unique NamemRNA_H-paniculata_contig6129.13831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6129.13831.1 vs. uniprot
Match: A0A6H5K0X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.020e-15
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   40 FGEVPVVAKLKAVRQAKEEQARGEIATIRRDLLRDPLMNPPSDVKMRMCAEYLKKMSVRHAVAAMTYEDQMR 255
            FG V    K KA+RQ KEEQARGE ATIR  LL DPL+NPP D+++RMCAEY+K+M++RHA A   +E + +
Sbjct:  485 FGAV----KGKALRQFKEEQARGEKATIRAHLLLDPLINPPGDLRVRMCAEYVKQMALRHAGAVAEFETKAK 552
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BLAST of mRNA_H-paniculata_contig6129.13831.1 vs. uniprot
Match: D7FHT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.120e-14
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   61 AKLKAVRQAKEEQARGEIATIRRDLLRDPLMNPPSDVKMRMCAEYLKKMSVRHAVAAMTYEDQMREMDAAR------NSKGDLLS 297
            AK KA RQ KEEQARGE ATIR  LL DPL+NPP D+++RMC EY+K+M++RHA A   +E + + +   +        KG LL+
Sbjct:  503 AKGKAFRQFKEEQARGEKATIRAHLLLDPLINPPGDLRVRMCGEYVKQMALRHAGAVAEFETKAKHIAGLQLKTTKFGEKGSLLA 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6129.13831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0X7_9PHAE6.020e-1558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT4_ECTSI1.120e-1450.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6129contigH-paniculata_contig6129:1899..4653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size338
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6129.13831.1prot_H-paniculata_contig6129.13831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6129 3065..4615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.426285-UTR-H-paniculata_contig6129:1898..19971622930689.426285-UTR-H-paniculata_contig6129:1898..1997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 1899..1997 +
1691481407.3112736-UTR-H-paniculata_contig6129:1898..19971691481407.3112736-UTR-H-paniculata_contig6129:1898..1997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 1899..1997 +
1622930689.4446685-UTR-H-paniculata_contig6129:3013..30641622930689.4446685-UTR-H-paniculata_contig6129:3013..3064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 3014..3064 +
1691481407.3219683-UTR-H-paniculata_contig6129:3013..30641691481407.3219683-UTR-H-paniculata_contig6129:3013..3064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 3014..3064 +
1622930689.5192537-UTR-H-paniculata_contig6129:4615..46531622930689.5192537-UTR-H-paniculata_contig6129:4615..4653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 4616..4653 +
1691481407.3605967-UTR-H-paniculata_contig6129:4615..46531691481407.3605967-UTR-H-paniculata_contig6129:4615..4653Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6129 4616..4653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.472792-CDS-H-paniculata_contig6129:3064..31961622930689.472792-CDS-H-paniculata_contig6129:3064..3196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 3065..3196 +
1691481407.3331208-CDS-H-paniculata_contig6129:3064..31961691481407.3331208-CDS-H-paniculata_contig6129:3064..3196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 3065..3196 +
1622930689.4934855-CDS-H-paniculata_contig6129:4597..46151622930689.4934855-CDS-H-paniculata_contig6129:4597..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 4598..4615 +
1691481407.3504815-CDS-H-paniculata_contig6129:4597..46151691481407.3504815-CDS-H-paniculata_contig6129:4597..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 4598..4615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6129.13831.1

>prot_H-paniculata_contig6129.13831.1 ID=prot_H-paniculata_contig6129.13831.1|Name=mRNA_H-paniculata_contig6129.13831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MNPPSDVKMRMCAEYLKKMSVRHAVAAMTYEDQMREMDAARNSKGDLLS*
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mRNA from alignment at H-paniculata_contig6129:1899..4653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6129.13831.1 ID=mRNA_H-paniculata_contig6129.13831.1|Name=mRNA_H-paniculata_contig6129.13831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2755bp|location=Sequence derived from alignment at H-paniculata_contig6129:1899..4653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATACTCTCCGGTGACACCATTGGCATCCCCGGCGGCTTTTGGAGAGGT
GCCAGTGGTAGCAAAGTTGAAAGCCGTGCGGCAAGCGAAAGAGGAGCAGG
CAAGGGTCGTTTCGTCCTCTGAGTATAAACTGACCAATCAGCCGCATGAC
ATATTCTTTGTTTACGGGTTTGTCGATAGTCCACTCTTGACAGCACTTTC
GCGAGAAATCGCAAGGACCATATGAAGGAACAGGGAATACTGACGTGCAC
CCGTATTTTTAGCAGAACGAGAGGAATCTATTCGTCACAGTTTGTCTATT
CCATGTCGTCTATGGGCCGACGCGGCCTCGTTCGTTGAAACGATTCCTTC
CTTATATCACGTCAGTACTTCTGCTTGTTGTTCGTTTTTCGGGATGTTTG
TTTTCATAATCCCGTTTTCCCTTGTGTTCTTCGTTCATTTTTGTGAAGTA
CAAGTGTATCCCGCGATGGGTGTGTAGCTCTAGTTGTTTTTGGTTTGTTT
CGTTCGTTATTTTTTTGCCTTGTTTCGCTCTTGTTTATCGCTTTTTCCCC
CTGTTGTTGTCGTTTCCGTTTTATATTTTTCGATCTCTCAGTTTTCCCAG
ATACAGTTGAAGTTGTTAGTTATACCCCCATTATCAATCACCGGGGGCAT
TGATTGCTCCCCTTTCACTCATATTTTGCGCAGTCCACGCGCTTTTGTTT
CGTTGACAAAACATCCCGATTGGAATTTGGCAGGGTACTAGTACAAGATC
TCTAACGCCCGTACATCACGGGTCCTGATGATCCCCTCCTTGGATCTTGT
GACAACATGACGCGATAGTGCTAATGACCTTGTGTTTCTTTTCACCTTCA
CTCCGACCGGCCAGTCCCTTGCGTTGTTTCAAATTTACTGATGAGCGTAC
AGCTTTAGAGCTATAGCGTGTAGCCATAAGTGTGGACAACATATACGTGC
ATTGAAAATGAGATGAACATCGAGATGTCTGGACCGTTTTCTTGTCAGAG
TTTAGAAGTAAGTGTTAGTTTGTTCAGTTTGTGGATAATGACTGAGTAAT
CCAGTAGTTTGAAGATGTTGAGCATACACTCTTCCGTCCCCCCCCCGTCG
GCCGTCTAAGCACAGGCACGAGGAGAGATAGCGACGATTCGCCGTGACCT
TCTCCGGGATCCATTGATGAACCCTCCGTCAGATGTAAAAATGAGGATGT
GTGCGGAGTACCTGAAGAAGATGTCGGTGCGCCACGCTGTGGCAGCGATG
ACGTACGAGGATCAAATGCGGGAAATGGACGCCGCGAGAAACTCAAAGGC
AAGCAGGAAGCGATCTAAAAACTCGACACTGAACGTATACCATTCGTACA
TTCAGCTAGGCTACCGTTTGTCTAATAGAATCGAACATCATTCATTCAGT
TGAATGTCCGTCTGATACCGTAAATATATCAGAGCGATCAATTAGCGTAA
AAATTATGGACTATCCAATTGCTGTACAAGTGGCTTCGATCTGTGTTGGA
TTAGGGCTGACTTGCTGTCGGTGCTTACGAGAGTCGTTCGACCATTGAGG
GGTCCAAATCGAGTCAATTGTTAGGTGCGTTCCATGGAACGTACTCCGCG
GGTTGCGCTTTATAGCATTTTCTGTATAGCTTCCCGAGGCCTCATCTGAT
GTAGCACTTGAAAAATGGATTGCACCACAATGTTGGATAGGGGATAGTAC
AGCAAACAACATTAACAAGAAGACAAGAACATTTCTAGCTCATCACCAGG
TGTTTACTTGGATCAGATCTATCATTGCCCAACAAATTTGCAGCTGAAGA
TGTCTCATCTTAAAGACGTAATTGATCCGAAAATTCCGTAACCATTGGCT
TGTTACTAGGCAAACCCGGAGTGAAGACAAGAGTGAAAGCTTGTTTCGAG
GATAGGCCTGTGGTCGCAACAGCAGTGAGTAAGCAGAACCGGTCTCCCAT
CAAGAAACATTTATAATTCGTGCCATTTTTTTAGCGAAAATTATGATTAA
CTGTGGCGGCCTAATACAATTCTTGTACATAAAATATTGCATCCCCCGGA
CAAATACGAATAAAGTACCCACCCCTTTTCATTCGAGTTACGAGTATTAT
TAGCAGTCGTGAATGGTCAGGGGCACGTAGAACACACGAGCTCATTCTGA
AATGTAGGCGAATACGTTTAGTTTTTGTGAAAAGCCATATGTAAATATTC
GTATTTGTCCGAGGGGTGGAAGATTTTGAGCCTTATTCTATATAAGAATT
TCTCATCTGCCTGGGAGGAGGGGGCTGGTCCTGCATTTCCTGTAGTAGTG
CTGGATAAAACGATTCTTATTGCTGGCCTTGGACGCGCACACACTTGGGG
TATATTCTCCTGTTTGATCTTCTCTTGACCCGGAATCGCGGTATGTTAGC
TGATATCTTGTCGTTTTCCACTACGCCATATTCTTCCGAGTCCCCGCTTT
ATCGAAATGTAATTAATACATAAGTGCACGAAGGTGAGAAATGGTGTTTG
TAGTCCTCCTGCGATGGGGAGGTCACTTTGGTTTCAGCCACAATCTCTGT
AGAATGGTTACTTACCCGACGCGACCTCCGTGTTCTGTGTCATTTTACAT
TCGCTTGTTCCCGTGCGTACGTGCACGTGGAGGGTTTTGCTCGAACAATC
GAACTTGTTCGAATCCCCAAAACGAATCTCGATCGTTCTCAAAAGAAAGG
GAGACCTCCTGTCATAGGATGAGCGTTTGGCTTGCCTTGAACACAGATTT
CGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6129:1899..4653+

>mRNA_H-paniculata_contig6129.13831.1 ID=mRNA_H-paniculata_contig6129.13831.1|Name=mRNA_H-paniculata_contig6129.13831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig6129:1899..4653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCCTCCGTCAGATGTAAAAATGAGGATGTGTGCGGAGTACCTGAA
GAAGATGTCGGTGCGCCACGCTGTGGCAGCGATGACGTACGAGGATCAAA
TGCGGGAAATGGACGCCGCGAGAAACTCAAAGATGAACCCTCCGTCAGAT
GTAAAAATGAGGATGTGTGCGGAGTACCTGAAGAAGATGTCGGTGCGCCA
CGCTGTGGCAGCGATGACGTACGAGGATCAAATGCGGGAAATGGACGCCG
CGAGAAACTCAAAGGGAGACCTCCTGTCATAGGGAGACCTCCTGTCATAG
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