mRNA_H-paniculata_contig6129.13832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6129.13832.1
Unique NamemRNA_H-paniculata_contig6129.13832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6129.13832.1 vs. uniprot
Match: A0A6H5K0X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.600e-9
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:   56 VEDLPPKPRWRASASTVEITALVDAGVKYVLGLQWLWEPSTP 181
            ++++P +PRWR      E+ ALVDAGV Y+ G+QWLWEP TP
Sbjct:  572 IQEMPVRPRWRTGPIPGEVAALVDAGVDYISGVQWLWEPRTP 613
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BLAST of mRNA_H-paniculata_contig6129.13832.1 vs. uniprot
Match: D7FHT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.180e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:    2 ALCLAVPAKRGAFTRWGDVEDLPPKPRWRASASTVEITALVDAGVKYVLGLQWLWEPSTP 181
            A+ LAV A R       ++  +P +PRWR      E+ ALVDAGV Y+ G+QWLWEP TP
Sbjct:  587 AVSLAVQAGRRVLGL--EMAGMPVRPRWRTGPVPGEVAALVDAGVDYISGVQWLWEPRTP 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6129.13832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0X7_9PHAE4.600e-954.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHT4_ECTSI1.180e-848.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6129contigH-paniculata_contig6129:4668..6252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930689.3583944-CDS-H-paniculata_contig6129:4667..47281622930689.3583944-CDS-H-paniculata_contig6129:4667..4728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 4668..4728 +
1691481407.2884116-CDS-H-paniculata_contig6129:4667..47281691481407.2884116-CDS-H-paniculata_contig6129:4667..4728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 4668..4728 +
1622930689.3787568-CDS-H-paniculata_contig6129:6128..62501622930689.3787568-CDS-H-paniculata_contig6129:6128..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 6129..6250 +
1691481407.3009572-CDS-H-paniculata_contig6129:6128..62501691481407.3009572-CDS-H-paniculata_contig6129:6128..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6129 6129..6250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6129.13832.1prot_H-paniculata_contig6129.13832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6129 4668..6250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6129.13832.1

>prot_H-paniculata_contig6129.13832.1 ID=prot_H-paniculata_contig6129.13832.1|Name=mRNA_H-paniculata_contig6129.13832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
GTVLGGAREAGGIYSMGRRGGSTSQAPLACQRKHGRDYCPRGCRGEIRFG
TSVALGTFYAF
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mRNA from alignment at H-paniculata_contig6129:4668..6252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6129.13832.1 ID=mRNA_H-paniculata_contig6129.13832.1|Name=mRNA_H-paniculata_contig6129.13832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1585bp|location=Sequence derived from alignment at H-paniculata_contig6129:4668..6252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACTGTGCTTGGCGGTGCCCGCGAAGCGGGGGGCATTTACTCGATGGG
GAGACGTGGAGGTACGATATCGGCCATACTCCAGTACAAGAGAGCCCGTG
TAGTAAAACACTGAACCTCATGTTATTAGATTTTGAGGATTTCCCCCCAA
GAAATCGCGCTTAACTGACGATCCCCTTTTAGTACATGTATATGATGTCA
TATAGTGAGATTTGATTAAGCTTCACCCCAAACGAAAGATTCTTATCCTG
GGTACGGTGAAATATCGGGGATGTCGCGAAAACTTGGAGGTACGAACTAC
AGTTGTCATAATCCAGTGCCACTACTAGTTACTAATGTAAGGTGGTGATG
ACGGCCGTCGTCGCGGAATAGCTTCTTTTAATCTGCGCTCAAGTAACTTC
CAAATAGGGAACCTAAAAACGACCCCGTCTAGTCTCTGTTCAAGTAAAAC
AAATACCTTCGAGCAAAATGGAGTAAAGCAATTCACCTATGCGTAGTGAT
CCGAGATGCGAGCATGCGCTAGCCTCAGCGAGTGCAGCGATTCCGTGCAT
GTCGAGCAAAAATTGAATGGTAAACGTACCTACATGCGAGCCGTAAGCGG
GTCAAGGCGGCGAGCGTAGCTACTTTGTGTGCGTGAGTTAAAGGTAAGGT
GACATCGTCGACATCGCCGCCACAGCTGCTGTAGCCTTGGCCTGTCTCCT
GGAAGGATGTATTGGAGGATGTTGCTTCGTCCTTTGGTATAGAGGTGGTG
CATAGTGTTGGCCGCTTGAATCGCGACGCATTCCGGGTCGTTGCTACAGG
AGCAACAGCTGCCTCAACACCCAAGTAATACAAACCCATGTATTATTGGC
ATTTTATTAATGTACACAATATTAGTTAGATCTCCACTGTCTTTCGCGTC
GAAATGTTTTGCTAATGGTGAAGATATTTGTTATTGTAGTGTGGAGTCTT
ATTACAGGCAATATGGACTCTAAAGTATACCAGATTATTTTTGTGGGCTT
CCGCGAGGGCAGCATACTGTGCTGCGTTTCCGCTGGCGGATTTCTTTTCT
TGCGCTACCAGTGACGCCAGCATCACGCATCGTCTTTCCCTGACACAAAA
CCCCGATCCGTGCGAATTTCAAGACACATTGTACTAGCACAGTCAGTCTT
GCGTTTGGTGCTGCTCGGGCATTCTAGCTTAAACATTTCTGTCTGTGTTG
TCTGCCAGCATACAGCAGTCAATCGCAATCTGAAAATCTCACTATACCCC
GTTCGTTTCGGTTTATTCTTATGTCAAGGAAGGAGAAGACGCATCTTGCC
TATATTCTACACGTACTGTAGCAGCAAGATCTGCACCGCAGTAACTGCAA
GTAGTTGTGACCAACATAGGTTCCCTCCCCCCGCCCCTGGATTAATTCAG
TGTTATTATTTGCTGTGTTATCGATAATGACCAAGATCCTATTGCTCGCG
TCGGTTACTAGGATCTACCTCCCAAGCCCCGCTGGCGTGCCAGCGCAAGC
ACGGTAGAGATTACTGCCCTCGTGGATGCCGGGGTGAAATACGTTTTGGG
ACTTCAGTGGCTTTGGGAACCTTCTACGCCTTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6129:4668..6252+

>mRNA_H-paniculata_contig6129.13832.1 ID=mRNA_H-paniculata_contig6129.13832.1|Name=mRNA_H-paniculata_contig6129.13832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig6129:4668..6252+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACTGTGCTTGGCGGTGCCCGCGAAGCGGGGGGCATTTACTCGATGGG
GAGACGTGGAGGGCACTGTGCTTGGCGGTGCCCGCGAAGCGGGGGGCATT
TACTCGATGGGGAGACGTGGAGGATCTACCTCCCAAGCCCCGCTGGCGTG
CCAGCGCAAGCACGGTAGAGATTACTGCCCTCGTGGATGCCGGGGTGAAA
TACGTTTTGGGACTTCAGTGGCTTTGGGAACCTTCTACGCCTTCGATCTA
CCTCCCAAGCCCCGCTGGCGTGCCAGCGCAAGCACGGTAGAGATTACTGC
CCTCGTGGATGCCGGGGTGAAATACGTTTTGGGACTTCAGTGGCTTTGGG
AACCTTCTACGCCTTC
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