mRNA_H-paniculata_contig6112.13819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6112.13819.1
Unique NamemRNA_H-paniculata_contig6112.13819.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6112.13819.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.030e-19
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 2
Query:   29 MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWHFPIAMLDEVMQRVR 220
            MS W+KVTV+LH LEP PRFGLRHPYS ALIAVYK++ +S+FD   ++WHFP+ +  EV+++VR
Sbjct:    1 MSSWIKVTVVLHSLEP-PRFGLRHPYSNALIAVYKAISDSVFDHPNRLWHFPLGLRTEVVKKVR 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6112.13819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK86_ECTSI4.030e-1962.50Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6112contigH-paniculata_contig6112:3263..11256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D8LK86
KEGG koko:K14440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size220
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6112.13819.1prot_H-paniculata_contig6112.13819.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6112 3291..11256 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930687.5066912-UTR-H-paniculata_contig6112:3262..32901622930687.5066912-UTR-H-paniculata_contig6112:3262..3290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6112 3263..3290 +
1691481406.5145137-UTR-H-paniculata_contig6112:3262..32901691481406.5145137-UTR-H-paniculata_contig6112:3262..3290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6112 3263..3290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930687.5224392-CDS-H-paniculata_contig6112:3290..33951622930687.5224392-CDS-H-paniculata_contig6112:3290..3395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6112 3291..3395 +
1691481406.5238287-CDS-H-paniculata_contig6112:3290..33951691481406.5238287-CDS-H-paniculata_contig6112:3290..3395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6112 3291..3395 +
1622930687.5358555-CDS-H-paniculata_contig6112:11169..112561622930687.5358555-CDS-H-paniculata_contig6112:11169..11256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6112 11170..11256 +
1691481406.5315504-CDS-H-paniculata_contig6112:11169..112561691481406.5315504-CDS-H-paniculata_contig6112:11169..11256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6112 11170..11256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6112.13819.1

>prot_H-paniculata_contig6112.13819.1 ID=prot_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSPWLKVTVLLHDLEPSPRFGLRHPYSQALIAVYKSMGNSMFDFSQKVWH
FPIAMLDEVMQRVR
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mRNA from alignment at H-paniculata_contig6112:3263..11256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6112.13819.1 ID=mRNA_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7994bp|location=Sequence derived from alignment at H-paniculata_contig6112:3263..11256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAGGTGGAGAAGGTCCCACCATCGATGTCTCCTTGGCTCAAAGTAA CCGTGTTATTGCATGATCTTGAGCCCTCGCCGAGGTTCGGCTTGCGACAT CCCTACTCGCAGGCGCTTATCGCAGTCTACAAGGTGAGGCTAGACCGGGT GCGGAGTATGTTGGCGCGGGGTATGTTAGCCTCGACTTTCGAAAGTGTCT GTCGATGCTCCTGCAGTTGAATCTTCTGCGCACAGCAACATGGTGTTGAT TGTGTATTTGTGTTGGCGTGCACACTGCAGTACGATGAGTGTCACTATAG TATTGACGTGTAGAACGAAATTCTTACGCATAGGTGTAGTTTAGGTTCGC GCTCGGCAATAGGTGAGACTGCATAGCTGAACGGGGTGCGCCTAATAACA CATGTGTGAACCTAGTATGGCGCACACAACGCCTCGATACGTCGATACGC GACATGGACGGTGCCGTTTGTTATCATGTGTATGGTACAATCCACACATA CAGTCGATATTATAGTGAGTGTCGTACTCGGTGCTTTTCCTCATTCCGCA CACACGTGACAAGACCAAAGAGCAGTACAACATGTTCAACAGATATTCTT CCGTCACTCGCCTCCTGACACCCACTATCCCAACTATTCCAACAATGTCG CTCTCCCGGACTTCTCCCCCTCACACTTCGTTCCCAAACGGCGAAGTTGT GGCGATGTCAAACATGTGGCTCGGGGCTAGAACACCAAACGGTCGCTACG AAGGACTGTGAAGTGCATGTGATATATTGTGGACATAGACCCACATAATG CGCACACACTAGGTAATGCGTCGTGACGCCTCATCAGATCTCCTATATTC GTCCTTGACTGTAGATATTATGGGGGTGAAACCGTCGAGGCGGGTTGGGT TATAGATCTTTGTCGCTTCAAAGGTGCTGCTCGTCATATTCCACAAAAAC TCTGCCTCAGACTTCGCAGTTTTCCGATAGCACTATTGTTGTTTTGTTTT CATGAGCTCATGACAGCTTCGCCGTTTTTCTACGTGGTTTTTGCCCTAGA TCGGGATCTTGACCCATATATCAGGAGTTCGACTACATCGCGCAGCGAAT ATGTACAACTGTGAAGATGGTTTAATTATATCCCCTAGATGGAGAGCGAC CTAGATTAGGGGAAGGATGTACTACAGTGGTGTGTGCCTAAGTTAGGCAG GAGCTGTGATCGCTGTGGTGTTCAGACAGACGATGCAGTATAGACGGTAC ATATATCTCGAAAGAGTTGGAATTGGCTTGCCTACGATGACTACAGCGCT CGATATGATGATTAGCTGCCATTTTTTTTCTGAACCCTATCCGGATATAA TGGTTAACGATTGATGAAAGTTCGAATTACATTTTAAACGCTTGCTCCCG TCATGTTAACCTGTGCTGCAGCCAATACAAACCGAAATAAAGGTACAGCC AGATCAACAGTGTGAAGGCACGTCTGAACCCCAATTTGTTTTGCGAAAAA GTTGCGGAGTATTGCCGTTCTGGATGGAGAGTTGTGGTTCACGACAGGGC GAGGATTGATCGTGTTCCGTAGTAGTTGGTACCAACACACTCCAAGCAGA GGGAGAATTGGTGAACGTTTACCTTGTTGGCGGAGGCCTTGCAAGTTCGT TTTAATCATGGAAGAAGTATATCTCTAGAAGACATATTAATTATAGAGTA GGGGCATTTCGGTTACTTTTTGCTGCTGCCCTGACCGTTTTTTCGTTTTT TCAAAAGGTGTGACATACGGTATGACCGTTTTGGTACAAAAACAGACTTG AACAGTGATTATACAACAGATCGCCTTACGAGCCTGACTGAGCTTATTGC ATACCACATCCAGCCCCAGATACGTGTACCGAATGGCCATGCGTAGCTTG CATGCAGCAAGATGCTGACAGCAGGCGTTGGGATTGACATCGTAACTCAT CGTACAGATCAATTTTTTTTTCGGATATTTGCAAGGGTGTGTTGTGTAGG GTATTTGTAGGGTATTGGAAATGTTACAGAACTCAGAACTTCTCTGTAGG GTATTGGAAATGTTACAGACTTCACAGAAGTTCTCTGTAGGGTACTTACA GACGGTAACTACCCCCCGGTATTTTTGTGGGTACCCTACGGAACACACCC TTGGATATTTGTACGGTCCTTGATGCCGCAAAAAAATGCTGCTGGACGAA AGACCAAAAATATGGACCAATATATATACATATATATATATTGGTTTGCA TACCCTCGTGGGAGTCTAGAAAGTTGTTCCAGGCCTCCAAACGAGGCCCC CATCTATCATGAACATCTCGCGGTGCTCTCTCGAGTTGGATCGCTGTCCT CTAGTGTCCTACCAGTAGAGAGACACTCGTTGGGTACAAAACGTTCAGTT GCCACATTTTTAGTTTCGAACGAAGAACTTCATGTGGCACTTGCGTGGCA CCAAAAAGGCAGCGGTGAAGCGTCTGTACAGTCAGCATCGTAACATATAA CTATTTAAATACACAACCAACCTGCACCAACACGACCATATATCCTCGTC ATCGATATGCTGCTGTTGCGTGCTGGTACAGGAGCTTTGAAGCTCTAGCA CACATTTACCGCGAGCATCGAAGCACCACTTGTGTGCCATAGGTTTCTCT GCAGTTGGGTGGGTAACCTGTAGTGTGGTCGAGACTATGTAACTGGCAGC GATGACGAAATGTCGCATGTGCTTTGGTGTGCTGTGTTTTATTTGCAGGT CATATCTGCCACCATATACGCGAGATATCACCCCTTGGGATTCTCCCTTG CTAAGGAGATGCCTTCAATATGACATTTTTCTCGCTAATATCCCTTGCCG TATTCGACCGGCGCATGGAAGCCATGCCCTGCACTCGCTCCGGATCATGA GAAACCATTGCCCCCGAGTAAATCTTCCCGCACCAGCGCATCTCCCGCCG GGACAACTTCACCTTGTGGACCACAGCATATATACTGCGTCTCTGTAGCC GCTCCAGCACCGCCCGCAGTCTCTACGTCAGTTCCTGCCGCGTACCGGCC CATTTTCCTAAATCGTCAACCTACACTTCGCAGATTTTGCCGAGCAGGCC TTCCAGAATGTCTCCTATCGTCCCCTGGAGATAACTAGTCGCATTTAGCA CTGGCTGGCGGAGTCTGGTAGGCGTTTATAGCCGCTTGGTCGTGACCATC GTGATTATCTCTTGCGCTTGGGGGTCGAGCGGTATTTGCCAGTATTCCTG GAGCGGATCCAGCGTGCAGAACGCGCTAGCTCCTGCCATGTCTAGCCCCA TCTCCTCCGAGTTTGGAAATCGCCGAGGGCGCGACCAGGATGTTCACTGC GCGTTAATCGGCCACCATTGGGTATATGTCCTTTTTGGGCACCTCCATCG CCACCCTGCCAAACCTTGCCTGGGACTCGCGAATAGTATGCCTATCCGTG CCAGCTTCGCGGATTGATCATCCAGCCATTCCTCCTTGGTGTGCGACATC GGGCGCGGCCCCACCCAGGCAGTACGCGCGTCCGCCGGCGGGTCTCCGTT CAGCGCCCGCTGAATCGCCTGGAAGTGGGGGTTCATCATTAGTTCTCTTA GCTCCGCGACTCCCCTCGATGGCAAACCCTCGGTCCTCGCCTCTTCTATC GCCGATTCCAAAGCCGCGGCACTCTCTCGGATCTCCGTGTTTGCTGTCAT GAATATGTCAGGTCCTGCCCATCGCGATCATTACCTCGTCTTCAGCATCC CCGCCATTGTCCGCACCACCTGCGGCTCGTAGTAGAGTTTCCGCATTTAC TTCGACACTCCGATCGCGCACTGGGCCTTGTTTCGTCACGTCTCTTTACT CCACGATTTCTTCGCATCACGTCGATATCCAGATTCTTCCGCAGCGTCCG TCCGCCGAGAATGACCACCCCCAATTTTCCCGGCACTATCAAGAGCGGCA GCACGATCCGCAGGTCGCCCCTGCTAGACGCGAGGACGATATATAGTGGA ATCATCTCTTCCATCAGCTCCAACTTGCGCCCGTTAGCCACCTGTGCCTT CAACACGCCGGTATACAGCCTCGAGAGGAACTCGCCGGTCACTGCTGCTG TAGCCGATGAAGAACGTGTTTAGATAAAACCGTCACACCAGCCCTCGAGT CCAGCAGTATGTCAACGCTCAATGGCTGGACATCCGCTCCCGGTAACTCC AGACGCCCTCGGAGATGGTGGTCCACGTGTTCTACGTGTACCTTATCGCC TCCGCCCACAGTGCTCCCCACCTCAGCCCCTTCACTCACGGCTACAGGTA GCTATGCGTAGCGAGTGGACATACTGAAGCTGTTGGAGCCGCTAGGCTCC GGCGGCGTCTTCACAGGCGCCGACTGCAGTTGTGGGGGCGGCATGCTCGG CCCCGCCTGCTGCGAGACCATTGTTTCCATGACTGACTGGGTTCTCCCCA GTCCGCCGTCGATGAACAATCGTTTAGGCACCTGGACCGTGGCGAATTCC TCCTGTTCGCCAGCCGTGAAAAATAGATTTCGTGGCGACCGCTCCTGCTG CCCACCGCTCAGCACCCCACCCTGGCTCCTTGTGCGCTGTGCCACCGACA TCCCCTTGTCGAGGGCAGGATCAGTCGATTTATGACTACCCGGTCTCTGG CGCGATGAGGTGGAGGATTGCCTGGACATGTCTGCCATCTGTCCCTGGTT GGCCGTCTGGCCGTGGGCGCCACGCCCGCACTTCGTTTGTTTATGCTCTA CCCCTCCACATATGAAATACTTGCCCGGGAAGCCCTTTTCTTCCTTGGCC ATCTTCTGCGTACCATGGGCTGGCTCTCCAGCCTTCTGCGTAATTGGGGC AGCCTTTCCTCTTCCAACTATCGCTTTCCGTCCTGCCGCACGTCGTTTCA CGATGACTTTCTCTTTTCCCAGCTTCTTTGGAATCTCAACAAATGGCGGG GGGGGTCACTTGAATTAGCGCTTATTCTCACCATCTGTATGGTGTCCTCT TCGTACTCTGGCGGCCAAAGACCCGGCAGGAGCGCGCTCACCACTGTCTC CCTGGGGTCAACGGCCCAGTCTCCATTTGGCATTACCACGTCCATTAGAT TGTTTGTATCTACGTATTGCCAAAGGTTTCCCTCCACGTCGGACACCCCG CGTTCCATCGGTAATCTGTCGTTCAGTCTCAACAGGCAGGCCATGTCCTT GACAAACACTCGTTCGTCAAGTGCTTCGTCATTGCCTACTAACTTTGCTA GCCCTGCGCGCAACAGAGCCTCAGTTAGCCTTGGCTTCCCCTTACAGAAT TTCGCATGGGTCATCTTTTTTATGTATGGGGCTACCACCTCCCTTAGAGG AGAGGCCACGCGCCCACCCCCATCACAATTAGAGATGGTCAGCTCCTCCT CATAGTTATAGTAGCCCCTCAAAACATTACGCACCGTTGAACCTGTTAGT GGTTGACTGAAGCGTGGCGTCATTCTCCCACTAGCCGTCACACTCACCCC TCGTTCTCCCGGCGCGGCCCCGCCCGTCTTAGCGCCGCCACCATCCCAGT GTTTTTCTCGAACCTCGACTATTCTCAACACCGCTGAACGCACGACGTGA GGAAATCGATCGAATTATATTAACCGTGGATTCGCAGTCCCGTGGTCGTT GCCTCGGGGACTTCCCTCCGAACTATAATACCCAGTATGCTTTACTAATT CACCGAAACTCCACAAGGAAGTGCCAAGTACGCTCCAGGAGCTCAACCAT TAGAAAACAATGGAATACACTTTGTAGCAAATTCACCACGTCGTACAACC AGTGACCTTCTCTGACCTATGCCGCTGTGCTGAAGTTACACTATGTCATG ATCCACGACCGGGCATGGATTCATCGTGTTCCCTAGCAGTTGCTACCCAG CCTCTCCACACGGGGGAGGAATTGGTTTGCATTTACCCAGTTGGCGGAAA ACTAGGTACACCGTTGACTGCTGGACGACGAAAATATGGGCAAAACACCT GGCGAACATTTTTTGTTTACGTTCAAACCTCCTTGGAATTGAATTCTGTA TGCGATACGACAAGTCATCCGACTCTCTGGTCGTGTTAGCTTCCCACTGG CACCTTTGTTGTTGACTACCGATGACTACAAACGTCGCAACGCTATCAAA GGTGAACATATGCTCTTCGATGATCTGTCTCTTTTTCCGCCTCAAGGAGT CTTACCGGGGTCTAAAAGCCGACACAGTTTTCAAGTGTATTTTAAACTAA AGAATGTTTTTATCTTCATAGTATATAGCGATTGCAGCGGGGGGGTGTTT GACTTTCTGTTGCTAGTGACTGTAGTGTGATACTGTCTGTAACTACGGAA CTGGCGATTGTCGCGCAGAATACCAGTATCAAACGAACGCACAAGTTCGG TAGTGACTCGTACCCAAGTATCAACACAAATAGACGGCACGAATCTAAAT AGCACGAGGCCCAGGACGGTTGGATTTGCCAACTCCAGGCACATGTGACC TATTATTGATTGTTTGGCGTTCAGTTGCGTTTCAGCCCGTCGGGTATTTA ACTAGTCAAGCACCCACGACATGATGAAAACATGTCACCGCCCGGATGAA TACGAATACTTGAGGCATTCGCGAGGAAAGCCAAAACGTATTCTCCTGAA GGGTCAGTGGGAGCACTTTTATTTTTTGTGCCCTGGACCATCTGCGATTG TTCCAAATGAAGTAAAACGAATAAACAGGGGCGACCATTTTTATCCATGT GCCCACACATTCTGAACCTTGCGGCAAATATTTTTAATTGTGTTCGCGAA TGCTTCCAAGTATTCGTATTCGTCCAGAGAGTGAAATGTTTCTCAAATTC GAGTTCCCTTGAATTGTAGTATCGCATGGAGTCCGTCCATCGACAGGTCT CGACGAGATATATTGTAACGAAAGAAATTTTGGTTTTGCCCGGCACTAAG CTTTTCAGAAACCCATGTTTGAAGAACGTAATATTATGTGTGTTAAAACT CGGAATGTTGCTCAGCATAGAGTCGCGAGGGGGCAGGAAGGGGTGGGGGG GAAATTCTCTGCCGATAGTGACGGCAGTGTTCGGCATGGCAGCTATAATG GTATGGTAACACGAGTCCCAAATAGTATTTGCCATGCGGGCAATGATGCC GTCAAATGAAAGAAATTAACGACTGCCGATACAGGGCACTGTCTATTTGC ATAGCTACCCCCGAGAGGTGGTCCTACTTCACTCACCTTAATGTGCAAAT AGCTTGTGTGTTTCGTGTGAAAGTTGGGAGGAATTTTACGACGATTACAC CAAACTTGCAGTCAGTCTCCCAGCTTTCAAACTAGAAATAGGAACACACG TTGTCAGTACGATTTGCTGGCCCGAAAGATCAGGCACCTGCGAACAGGAG ATGACGAGTTGACGCAGTTTGGGACGCATTGCTCCTCCAGCTCAGATTGA CAAATAACTTGACTCATGTTGCAGATTACCTCGAGCTCCAGTAATCAAAT GGCTGTGCATGAAACCGTTGCATAGGAATTTGAATTTCCCTAGCGTCCCG TTCTCGGAAGTACGTCGTGATCTGTATCATGGGGCCAGGATTCGACCATT GTCTCGAGTATTTTACCGGAGCGAAAATACGCATGCAACAGTAATGGTAT ACGGTTAGACTACGGTGCTGAGCATCTGCTAGTGTTGGCTCGGCTCTCGT TGGTTTCCGTTTGTGATATTGGTTTTTAGAAAGTGGAAGTCATCCACTTA GCGTTTCCTCTCTATATGCGTATCCCTCTATCCCTCCTTCTCTGTCTGAG ATTGGCACATACCCGTGCCGACGAAATACTGTGAGCACGCACATGAGGCA CACGTCACAAGCCTTTAATGTCTTGCCGTTTCGTTTCTCCGTTCCCACGC TCGTCAGAGTATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGTGGC ACTTTCCCATTGCGATGCTGGACGAGGTCATGCAGCGCGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6112:3263..11256+

>mRNA_H-paniculata_contig6112.13819.1 ID=mRNA_H-paniculata_contig6112.13819.1|Name=mRNA_H-paniculata_contig6112.13819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig6112:3263..11256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCCTTGGCTCAAAGTAACCGTGTTATTGCATGATCTTGAGCCCTC
GCCGAGGTTCGGCTTGCGACATCCCTACTCGCAGGCGCTTATCGCAGTCT
ACAAGATGTCTCCTTGGCTCAAAGTAACCGTGTTATTGCATGATCTTGAG
CCCTCGCCGAGGTTCGGCTTGCGACATCCCTACTCGCAGGCGCTTATCGC
AGTCTACAAGAGTATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGT
GGCACTTTCCCATTGCGATGCTGGACGAGGTCATGCAGCGCGTGAGGAGT
ATGGGAAATTCCATGTTCGACTTCTCACAGAAAGTGTGGCACTTTCCCAT
TGCGATGCTGGACGAGGTCATGCAGCGCGTGAGG
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