mRNA_H-paniculata_contig61107.13816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID) HSP 1 Score: 89.4 bits (220), Expect = 6.310e-20 Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 7 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVER-KVKISAADRGRNDNSTEYRSMVGSLMYASTGTRPDIAYAI 312
K N++++F M D G + + G+ VRRDR G I I Q +Y+R VL+R G DECR + TP+E K A + N Y++ +GSL+YAS GTRPD++Y++
Sbjct: 75 KKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSV 177
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 92.8 bits (229), Expect = 8.630e-20 Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query: 7 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 312
K +S F MKD+G+ R+ GI+++RDR G + +SQ SY+ +V+KR E + V+TP+ K+SA TE Y S VGS+MYA GTRPDIAYAI
Sbjct: 1054 KSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAI 1158
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A401GDC8_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GDC8_9APHY) HSP 1 Score: 89.4 bits (220), Expect = 9.280e-20 Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDN---STEYRSMVGSLMYASTGTRPDIAYAI 312
E KH++ F + DLG ++ GIE+ RDR G I ISQ YI+ +LKR+ + V P++ V +A D + + Y SMVGSLMYA+ GTRPDI+YA+
Sbjct: 112 ELKHDLQDLFEVMDLGEPQKIIGIEIERDREVGKIQISQQHYIKSILKRYQLENANAVGMPLDLNVAFTAEDENEEVDDHLAGGYASMVGSLMYAAVGTRPDISYAV 218
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 92.4 bits (228), Expect = 1.180e-19 Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---------YRSMVGSLMYASTGTRPDIAYA 309
E K ++ F+M+DLG V GI++RRDR I +SQ YI VLKR G ++C+ V TP+ + +++A D ND TE Y ++VGSLMYA GTRPDIAYA
Sbjct: 1214 EIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYA 1325
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A) HSP 1 Score: 91.3 bits (225), Expect = 1.730e-19 Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 7 KHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRND--NSTEYRSMVGSLMYASTGTRPDIAYAI 312
K+++S +F MKDLG L G+ + RDR NG + + Q YI ++L ++G C+ V TP++ K K+S D + +S Y+ ++GSL+Y S TRPDI+Y++
Sbjct: 103 KNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSV 206
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 91.3 bits (225), Expect = 2.990e-19 Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 16 ISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKV--KISAADRGRNDNSTEYRSMVGSLMYASTGTRPDIAYAI 312
+ ++ +KDLG + G+EV+RD+ GTI+ISQ YI EVLKR+G + C+ V TP+E + + S + R Y+S++GSLMY GTRPDIA+A+
Sbjct: 1047 LGEKIELKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAV 1147
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS) HSP 1 Score: 90.5 bits (223), Expect = 3.530e-19 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 312
+ K +S F MKD+G R+ GI++RRDR G + +SQ SY+ +V+++ E + V+TP+ K+SA TE Y S+VGS+MYA GTRPDIAYAI
Sbjct: 116 KLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSAVTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAI 222
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS) HSP 1 Score: 90.9 bits (224), Expect = 4.090e-19 Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE---YRSMVGSLMYASTGTRPDIAYAI 312
+ K +S F MKDLG+ R+ GI+++RDR G + +SQ Y+ +V+KR E + V+TP+ K+SA TE Y S VGSLMYA GTRPD+AYAI
Sbjct: 1057 KLKKVLSSEFEMKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDASECVDTEKVPYSSAVGSLMYAMVGTRPDLAYAI 1163
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 90.5 bits (223), Expect = 5.560e-19 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDNSTE------YRSMVGSLMYASTGTRPDIAYAI 312
E K +S F MKDLG+ ++ G+E+RRDR G +T+SQ YI +VLKR C+ + TP+ K+S+ + +++ E Y S VGSLMYA TRPD+A+A+
Sbjct: 979 ELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAV 1088
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 90.5 bits (223), Expect = 5.600e-19 Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1 EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHGFDECRGVHTPVERKVKISAADRGRNDN---------STEYRSMVGSLMYASTGTRPDIAYAI 312
E K ++ +F+M+DLG + GI +RRDRP I +SQ YI VL R+G +C+ +TP+ VK SA D N S Y S++GS+MYA GTRPDIAY +
Sbjct: 1194 EVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLV 1306 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61107.13816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig61107.13816.1 >prot_H-paniculata_contig61107.13816.1 ID=prot_H-paniculata_contig61107.13816.1|Name=mRNA_H-paniculata_contig61107.13816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp EFKHNISQRFRMKDLGSLPRVFGIEVRRDRPNGTITISQGSYIREVLKRHback to top mRNA from alignment at H-paniculata_contig61107:497..886+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig61107.13816.1 ID=mRNA_H-paniculata_contig61107.13816.1|Name=mRNA_H-paniculata_contig61107.13816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig61107:497..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig61107:497..886+ >mRNA_H-paniculata_contig61107.13816.1 ID=mRNA_H-paniculata_contig61107.13816.1|Name=mRNA_H-paniculata_contig61107.13816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig61107:497..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |