mRNA_H-paniculata_contig6107.13811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6107.13811.1
Unique NamemRNA_H-paniculata_contig6107.13811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6107.13811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6107contigH-paniculata_contig6107:2794..4188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6107.13811.1prot_H-paniculata_contig6107.13811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6107 2814..4188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.607802-UTR-H-paniculata_contig6107:2793..28131622930686.607802-UTR-H-paniculata_contig6107:2793..2813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6107 2794..2813 +
1691481406.0993967-UTR-H-paniculata_contig6107:2793..28131691481406.0993967-UTR-H-paniculata_contig6107:2793..2813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6107 2794..2813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930686.6262915-CDS-H-paniculata_contig6107:2813..28821622930686.6262915-CDS-H-paniculata_contig6107:2813..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 2814..2882 +
1691481406.110386-CDS-H-paniculata_contig6107:2813..28821691481406.110386-CDS-H-paniculata_contig6107:2813..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 2814..2882 +
1622930686.6420848-CDS-H-paniculata_contig6107:3251..33621622930686.6420848-CDS-H-paniculata_contig6107:3251..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 3252..3362 +
1691481406.1312551-CDS-H-paniculata_contig6107:3251..33621691481406.1312551-CDS-H-paniculata_contig6107:3251..3362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 3252..3362 +
1622930686.657326-CDS-H-paniculata_contig6107:4137..41881622930686.657326-CDS-H-paniculata_contig6107:4137..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 4138..4188 +
1691481406.1454356-CDS-H-paniculata_contig6107:4137..41881691481406.1454356-CDS-H-paniculata_contig6107:4137..4188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6107 4138..4188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6107.13811.1

>prot_H-paniculata_contig6107.13811.1 ID=prot_H-paniculata_contig6107.13811.1|Name=mRNA_H-paniculata_contig6107.13811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MKLEATGGLQCDDPARSKRTPLKNLPKREPSARQTSKRELSSAAQDTIAG
IYDYQYHSRKKTRTGELVDERDTETGR
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mRNA from alignment at H-paniculata_contig6107:2794..4188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6107.13811.1 ID=mRNA_H-paniculata_contig6107.13811.1|Name=mRNA_H-paniculata_contig6107.13811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-paniculata_contig6107:2794..4188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCCGTGAAAAGTTCAAGATGAAGCTTGAGGCCACGGGAGGACTGCAA
TGCGACGACCCCGCCCGCTCCAAGCGTACGCCGCTAAAGGTGACATTGGA
ATGTTGGGTTGGGGCTAGGGCTAGTCTTAGGCTTAGAAGTGCGTTGCGAC
TAAGTTGTTGCTTCCAGTTTTTTTTCGCTGTTTTATTTGCTTGGATATTG
TAGAAGCTTATGGGTCGGTCGTGCGTTCCTCCTCGTATGTTATTTATCGG
CTTCAGGTAATACATTTGAATACTAATTTTGACATTAATATGTAAATCTG
GTCCGCATACCGTACGCAAGATTTTCAGGTGTAATGTACAAGTCTGTTCT
ACAAAGCGTTGGCTAGGCAACGTTATAACTTCACTTCTTCAAAAATTGTT
TCTGTTGGCTATCTACCGCGTCTATCTTTGGTGTCAAATCTAACCGTCTT
GTGCGCAGAATTTGCCGAAACGGGAGCCATCAGCAAGGCAAACGTCCAAG
CGGGAGCTGAGCAGCGCAGCACAAGATACGATAGCCGGCATATACGACTA
TCAGTACCACTCTCGGAAGGTAATTGTGTTACAGTAGCTGTCGGAATGTT
TCTACTAACTACGATATGCTATACTAACCGTCAACAGTCAATTGCATAAA
TAGTGGAAGCTTGTCCTCACCATAACAATAGTCTATACCACTGTACTGTA
CACTACCCTCCCTGTAACGTATCTTTGTGACTTCGCACCCAAATTAGTAG
TATTCGACCACATCGATTGGTGTAGCTTCATCAATTGCCATTACGGTACT
TAAATTGTATCAGTCACATTTCACTGATTGCAACGGATTCTGCACCGTCA
ATATAAACTATATTGTGGGTATTACCATATTCACAAACAGGTGAGGCCTA
CAGCAAATACTTTTCTTATACTTACCAATATCATTATTATTGTTATTTAC
CATCTAATTTTTTTGTTGGATCCGGATAGACAATACTTGAAGGTTAACTG
GGAGTTCTGATAATCCCTGTTATCAGACGTTAACCGAATGGTGTTATTTT
AATTTCTTAAAATTTACTCTGCAATCCCATCTGCTGCGTGCTTCTAATAA
TCCCATCCGTATTTCGAGGCCTATTATAAACTGTTTTTCTCTTCCTTGTC
GTATTGGGGATTGGAAAGTTCCCGTCGGTCATGCGTCATTGCGCGATACT
ACGCGTTCCCCTGGATCTCAATCTCTGCGAGAGCCCCCACCGGTTGCACG
TTGTTCCATGCATGTCACTCTTCAACACCTCCCCTTTCTCAGATATGATG
TACAGCAATATCAACCCCCCCCCCCCCCCTCCCCAAACCAACAGAAGACA
AGAACAGGAGAGCTCGTAGATGAACGGGACACCGAAACGGGTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6107:2794..4188+

>mRNA_H-paniculata_contig6107.13811.1 ID=mRNA_H-paniculata_contig6107.13811.1|Name=mRNA_H-paniculata_contig6107.13811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig6107:2794..4188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTGAGGCCACGGGAGGACTGCAATGCGACGACCCCGCCCGCTC
CAAGCGTACGCCGCTAAAGATGAAGCTTGAGGCCACGGGAGGACTGCAAT
GCGACGACCCCGCCCGCTCCAAGCGTACGCCGCTAAAGAATTTGCCGAAA
CGGGAGCCATCAGCAAGGCAAACGTCCAAGCGGGAGCTGAGCAGCGCAGC
ACAAGATACGATAGCCGGCATATACGACTATCAGTACCACTCTCGGAAGA
ATTTGCCGAAACGGGAGCCATCAGCAAGGCAAACGTCCAAGCGGGAGCTG
AGCAGCGCAGCACAAGATACGATAGCCGGCATATACGACTATCAGTACCA
CTCTCGGAAGAAGACAAGAACAGGAGAGCTCGTAGATGAACGGGACACCG
AAACGGGTCGGAAGACAAGAACAGGAGAGCTCGTAGATGAACGGGACACC
GAAACGGGTCGG
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