mRNA_H-paniculata_contig6101.13805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6101.13805.1
Unique NamemRNA_H-paniculata_contig6101.13805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6101.13805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6101contigH-paniculata_contig6101:6936..8828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1893
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6101.13805.1prot_H-paniculata_contig6101.13805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6101 6961..8136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.444674-UTR-H-paniculata_contig6101:6935..69601622930685.444674-UTR-H-paniculata_contig6101:6935..6960Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6101 6936..6960 +
1691481405.7710357-UTR-H-paniculata_contig6101:6935..69601691481405.7710357-UTR-H-paniculata_contig6101:6935..6960Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6101 6936..6960 +
1622930685.486963-UTR-H-paniculata_contig6101:8136..88281622930685.486963-UTR-H-paniculata_contig6101:8136..8828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6101 8137..8828 +
1691481405.7892985-UTR-H-paniculata_contig6101:8136..88281691481405.7892985-UTR-H-paniculata_contig6101:8136..8828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6101 8137..8828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930685.4664614-CDS-H-paniculata_contig6101:6960..81361622930685.4664614-CDS-H-paniculata_contig6101:6960..8136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6101 6961..8136 +
1691481405.780254-CDS-H-paniculata_contig6101:6960..81361691481405.780254-CDS-H-paniculata_contig6101:6960..8136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6101 6961..8136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6101.13805.1

>prot_H-paniculata_contig6101.13805.1 ID=prot_H-paniculata_contig6101.13805.1|Name=mRNA_H-paniculata_contig6101.13805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=392bp
MCCHEGCTTRPSYGLESTRKAEYCRQHAKEGTVDVVTRRCCHEGCSTRPL
YGSESTRKAEYCRQHAEAGMVDVVNKRKRCSYEGCLTRPLFGSEGTRKAT
YCRQHAEAGMVDVANKRKRCSNEGCSSRPSHGSEGTRKAEYCRKHAEAGM
VDVVRKRCSYEGCSTRASCGLESTRKAEYCRQHAGAGMVDVVHKKCSYEG
CFTRPSYGSKGTTTAEYCRKHAMDGMVDVVTKRCSYEDCSTQSSHRSEST
KEAEVCVEHAKDNMVDFVNMNSISQGCHKTLSFGLEGTPKKTFRALHPED
GMANVRSGNSISLHQRSGNRGSRPDVKLEVDSRDATDGYGGDSKVSNEDR
KLISAPAVHLQSSSFSSASSVEEAAMSERLSVSEQSAAHTC*
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mRNA from alignment at H-paniculata_contig6101:6936..8828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6101.13805.1 ID=mRNA_H-paniculata_contig6101.13805.1|Name=mRNA_H-paniculata_contig6101.13805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-paniculata_contig6101:6936..8828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATCCGTGGTGAATAAGAGGAAGATGTGCTGTCACGAGGGGTGCACTA
CGCGACCATCGTATGGGTTAGAGAGCACGAGGAAGGCGGAGTATTGTCGG
CAGCACGCCAAGGAAGGAACGGTGGATGTGGTGACGAGGAGATGCTGTCA
CGAGGGCTGCTCCACGCGACCGTTGTACGGGTCAGAAAGCACTAGGAAGG
CGGAGTATTGTCGGCAGCACGCCGAGGCCGGAATGGTAGACGTGGTGAAC
AAGAGGAAAAGGTGCTCGTACGAGGGCTGCCTCACGAGACCGTTGTTTGG
GTCAGAGGGCACAAGGAAGGCGACGTATTGTCGGCAACACGCCGAGGCCG
GAATGGTGGATGTAGCAAACAAGAGGAAGAGGTGCTCGAATGAGGGCTGC
TCATCGCGACCGTCGCATGGGTCAGAGGGCACACGAAAGGCGGAATATTG
TCGGAAACACGCCGAGGCCGGAATGGTGGATGTGGTGAGGAAGAGGTGCT
CATACGAAGGCTGCTCCACGCGAGCGTCGTGTGGGCTAGAGAGCACGAGG
AAGGCGGAGTATTGTCGGCAGCATGCCGGAGCCGGAATGGTGGATGTGGT
GCACAAAAAATGTTCGTACGAGGGCTGCTTTACGCGACCATCGTATGGGT
CAAAGGGCACTACTACGGCGGAGTATTGTCGGAAACATGCCATGGACGGA
ATGGTGGATGTGGTGACGAAGAGGTGTTCGTACGAGGACTGCTCGACTCA
ATCGTCACACAGGTCAGAGAGCACGAAGGAGGCAGAGGTCTGCGTAGAGC
ACGCCAAAGACAATATGGTAGACTTCGTGAATATGAATTCCATCTCTCAG
GGCTGCCACAAGACACTGTCATTTGGGTTAGAGGGCACTCCGAAGAAAAC
CTTCCGGGCGCTGCACCCCGAAGATGGAATGGCTAATGTGAGGAGCGGGA
ACAGCATCTCCCTCCACCAGCGTTCGGGTAATCGGGGGAGTCGTCCCGAT
GTGAAACTAGAAGTTGATTCGCGGGATGCGACTGACGGTTACGGCGGCGA
TTCGAAAGTTTCGAACGAGGACAGAAAGCTCATCTCCGCGCCAGCTGTGC
ATTTGCAGAGCAGCAGCTTTAGTAGCGCCAGTAGCGTAGAAGAGGCCGCC
ATGTCCGAGAGATTGTCAGTATCGGAACAATCAGCCGCGCACACGTGTTA
GACTGCTATCTCGTCTTCTGACGTGGGATCGAACGTGAAGACAGAGGTGG
CTATTTCGCGGCATTCGTTGTCGGATCGGGCTTCTACCAGTACTGTATGA
TGGGTGAAGACGTCGGTTTCTACGGGAGTTTTATGGCGCGACAGGGTGTG
GTCACCATAGTCGTGCTGCCACCCATGTGCACATGGCGAGATCTTCGTTC
GGCCGATTGATGGGCCCCCACTTGCGTATATTTTACAGCAGGCGTTTATC
TCCAGCCGTATGTTCACGTTTTCGTGGTGGGTAGTCATCGACAAGGCCTT
GGGAATCTGTATGAAGATTTCGGGATGCGGTAGCTGGGTGTGCAGGAGGT
ATTGGGAAGTAAAGCATTTGGTTTGTTTTTTCGGACCTTTGGCTAGTGTC
AGCGAGATGCCCTGTGCGGGTACTTCGCTTTCTCGGGTTGGCTGCGGAAT
GTCGCATTTGCAGTTGAAAATACGAGGGTTTGACGATCAAGTTTCGTTAA
ACATACTAGTTTACCCTCTGATGCTCAGTTTTGGTCGCGACAAGCGACAA
AAATATTTTGTTTTTCTGATCCTCTGTTAGCCCATGGCCTGCTGCGTTGA
GCATCTGCCTATTGCCGTTCGAGATATAGACACTTAACCTAGGAAGGCTT
GGTTGTTTTGGGATCATTGGTCTGTGGTGTGGGTATGATAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6101:6936..8828+

>mRNA_H-paniculata_contig6101.13805.1 ID=mRNA_H-paniculata_contig6101.13805.1|Name=mRNA_H-paniculata_contig6101.13805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at H-paniculata_contig6101:6936..8828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGTCACGAGGGGTGCACTACGCGACCATCGTATGGGTTAGAGAG
CACGAGGAAGGCGGAGTATTGTCGGCAGCACGCCAAGGAAGGAACGGTGG
ATGTGGTGACGAGGAGATGCTGTCACGAGGGCTGCTCCACGCGACCGTTG
TACGGGTCAGAAAGCACTAGGAAGGCGGAGTATTGTCGGCAGCACGCCGA
GGCCGGAATGGTAGACGTGGTGAACAAGAGGAAAAGGTGCTCGTACGAGG
GCTGCCTCACGAGACCGTTGTTTGGGTCAGAGGGCACAAGGAAGGCGACG
TATTGTCGGCAACACGCCGAGGCCGGAATGGTGGATGTAGCAAACAAGAG
GAAGAGGTGCTCGAATGAGGGCTGCTCATCGCGACCGTCGCATGGGTCAG
AGGGCACACGAAAGGCGGAATATTGTCGGAAACACGCCGAGGCCGGAATG
GTGGATGTGGTGAGGAAGAGGTGCTCATACGAAGGCTGCTCCACGCGAGC
GTCGTGTGGGCTAGAGAGCACGAGGAAGGCGGAGTATTGTCGGCAGCATG
CCGGAGCCGGAATGGTGGATGTGGTGCACAAAAAATGTTCGTACGAGGGC
TGCTTTACGCGACCATCGTATGGGTCAAAGGGCACTACTACGGCGGAGTA
TTGTCGGAAACATGCCATGGACGGAATGGTGGATGTGGTGACGAAGAGGT
GTTCGTACGAGGACTGCTCGACTCAATCGTCACACAGGTCAGAGAGCACG
AAGGAGGCAGAGGTCTGCGTAGAGCACGCCAAAGACAATATGGTAGACTT
CGTGAATATGAATTCCATCTCTCAGGGCTGCCACAAGACACTGTCATTTG
GGTTAGAGGGCACTCCGAAGAAAACCTTCCGGGCGCTGCACCCCGAAGAT
GGAATGGCTAATGTGAGGAGCGGGAACAGCATCTCCCTCCACCAGCGTTC
GGGTAATCGGGGGAGTCGTCCCGATGTGAAACTAGAAGTTGATTCGCGGG
ATGCGACTGACGGTTACGGCGGCGATTCGAAAGTTTCGAACGAGGACAGA
AAGCTCATCTCCGCGCCAGCTGTGCATTTGCAGAGCAGCAGCTTTAGTAG
CGCCAGTAGCGTAGAAGAGGCCGCCATGTCCGAGAGATTGTCAGTATCGG
AACAATCAGCCGCGCACACGTGTTAGATGTGCTGTCACGAGGGGTGCACT
ACGCGACCATCGTATGGGTTAGAGAGCACGAGGAAGGCGGAGTATTGTCG
GCAGCACGCCAAGGAAGGAACGGTGGATGTGGTGACGAGGAGATGCTGTC
ACGAGGGCTGCTCCACGCGACCGTTGTACGGGTCAGAAAGCACTAGGAAG
GCGGAGTATTGTCGGCAGCACGCCGAGGCCGGAATGGTAGACGTGGTGAA
CAAGAGGAAAAGGTGCTCGTACGAGGGCTGCCTCACGAGACCGTTGTTTG
GGTCAGAGGGCACAAGGAAGGCGACGTATTGTCGGCAACACGCCGAGGCC
GGAATGGTGGATGTAGCAAACAAGAGGAAGAGGTGCTCGAATGAGGGCTG
CTCATCGCGACCGTCGCATGGGTCAGAGGGCACACGAAAGGCGGAATATT
GTCGGAAACACGCCGAGGCCGGAATGGTGGATGTGGTGAGGAAGAGGTGC
TCATACGAAGGCTGCTCCACGCGAGCGTCGTGTGGGCTAGAGAGCACGAG
GAAGGCGGAGTATTGTCGGCAGCATGCCGGAGCCGGAATGGTGGATGTGG
TGCACAAAAAATGTTCGTACGAGGGCTGCTTTACGCGACCATCGTATGGG
TCAAAGGGCACTACTACGGCGGAGTATTGTCGGAAACATGCCATGGACGG
AATGGTGGATGTGGTGACGAAGAGGTGTTCGTACGAGGACTGCTCGACTC
AATCGTCACACAGGTCAGAGAGCACGAAGGAGGCAGAGGTCTGCGTAGAG
CACGCCAAAGACAATATGGTAGACTTCGTGAATATGAATTCCATCTCTCA
GGGCTGCCACAAGACACTGTCATTTGGGTTAGAGGGCACTCCGAAGAAAA
CCTTCCGGGCGCTGCACCCCGAAGATGGAATGGCTAATGTGAGGAGCGGG
AACAGCATCTCCCTCCACCAGCGTTCGGGTAATCGGGGGAGTCGTCCCGA
TGTGAAACTAGAAGTTGATTCGCGGGATGCGACTGACGGTTACGGCGGCG
ATTCGAAAGTTTCGAACGAGGACAGAAAGCTCATCTCCGCGCCAGCTGTG
CATTTGCAGAGCAGCAGCTTTAGTAGCGCCAGTAGCGTAGAAGAGGCCGC
CATGTCCGAGAGATTGTCAGTATCGGAACAATCAGCCGCGCACACGTGTT
AG
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