prot_H-paniculata_contig61000.13804.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig61000.13804.1
Unique Nameprot_H-paniculata_contig61000.13804.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length71
Homology
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A151T234_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T234_CAJCA)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-7
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 70
            +YK K   DG +E+Y+ RLV+ G  Q++D+ F +  SP A +   +M+  LA+I +W L+ +D   A+L
Sbjct:  631 VYKVKHNADGTIERYKARLVSKGYNQLEDLDFLDTFSPVAKITTFRMLLALASINNWYLKQLDVNNAFL 699          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000B8AF143 (uncharacterized protein LOC110794847 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF143)

HSP 1 Score: 51.6 bits (122), Expect = 8.360e-7
Identity = 22/69 (31.88%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP-APVARTKMVSLLAAIQDWELRYVDFEQAYL 70
            +YK  + +DG +E+ + RLVA G+RQ+K+ +++   SP A  +  +M+  LA +++W++  +D   A++
Sbjct:   31 VYKVNLNKDGFLERLKARLVARGDRQMKEKYYKHTFSPVANFSTVRMLVALATLRNWKVHQLDINNAFM 99          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5B5T2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B5T2_VITVI)

HSP 1 Score: 53.9 bits (128), Expect = 1.100e-6
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 70
            I++ K   DG +++Y+ RLVA G +Q   + F +  SP   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  538 IFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 606          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2S6BTL3_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cercospora berteroae TaxID=357750 RepID=A0A2S6BTL3_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 1.440e-6
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0
Query:    2 MIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEA-SSPAPVARTKMVSLLAAIQDWELRYVDFEQAYL 70
            ++Y+RKIG+DGKV KY+ RLVA G +Q +   F E  S     A  + +  L A   W+   +DF  A+L
Sbjct:  115 LVYRRKIGKDGKVSKYKVRLVARGFQQREGFDFTETYSGVVKTAAYRTIFALMAALGWKCHQMDFVTAFL 184          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-6
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART---KMVSLLAAIQDWELRYVDFEQAYL 70
            IYK K+ E GKVEKY+ RL+A G  Q   I+F+E    APVAR    + V  +AA + W L  +D + A+L
Sbjct:   62 IYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVF--APVARRDTIRTVLSIAASKSWILYQLDVKSAFL 130          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A5BFQ2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BFQ2_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-6
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 70
            I++ K   DG +++Y+ RLVA G +Q   + F +  +P   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  189 IFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFTDTFNPVIKASTIRVVFTLAVTYNWEIRQIDFNNAFL 257          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A438FXI0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXI0_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 2.050e-6
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVART-KMVSLLAAIQDWELRYVDFEQAYL 70
            I++ K   DG +++Y+ RLVA G +Q   + F +  SP   A T ++V  LA   +WE+R +DF  A+L
Sbjct:  608 IFRVKYNSDGTIQRYKARLVAKGFQQYAGVEFIDTFSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFL 676          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 49.7 bits (117), Expect = 2.320e-6
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 0
Query:    2 MIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSP 40
            +++KRKIG DGKVE Y+ RLVA G RQ +++ ++E  SP
Sbjct:   30 LVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: A0A2K3MWU3_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWU3_TRIPR)

HSP 1 Score: 52.8 bits (125), Expect = 2.820e-6
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVAR---TKMVSLLAAIQDWELRYVDFEQAYL 70
            IYK K+ E GKVEKY+ RLVA G  Q   I F+E    APVAR    + V  +AA + W +  +D + A+L
Sbjct:  863 IYKTKLNEKGKVEKYKARLVAKGYSQQYGIDFKEVF--APVARWDTIRTVLSIAASESWTVYQLDVKSAFL 931          
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874)

HSP 1 Score: 51.2 bits (121), Expect = 2.960e-6
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 0
Query:    3 IYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPA-PVARTKMVSLLAAIQDWELRYVDFEQAYL 70
            +Y+ K   DG V KY+ RLVA G +QI  ++  E  SP    A  +++  LA +  W++R VD   A+L
Sbjct:   70 VYRAKYNTDGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDVNNAFL 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61000.13804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A151T234_CAJCA3.110e-737.68Retrovirus-related Pol polyprotein from transposon... [more]
UPI000B8AF1438.360e-731.88uncharacterized protein LOC110794847 n=1 Tax=Spina... [more]
A5B5T2_VITVI1.100e-637.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2S6BTL3_9PEZI1.440e-640.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3N6U7_TRIPR1.450e-645.07Retrotransposon-related protein n=1 Tax=Trifolium ... [more]
A5BFQ2_VITVI2.000e-636.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FXI0_VITVI2.050e-637.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0HGX5_PUNGR2.320e-653.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MWU3_TRIPR2.820e-645.07Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
UPI000CED78742.960e-637.68uncharacterized protein LOC112098012 n=1 Tax=Citru... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..70
e-value: 9.1E-10
score: 38.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61000contigH-paniculata_contig61000:702..914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61000.13804.1mRNA_H-paniculata_contig61000.13804.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig61000 675..914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig61000.13804.1 ID=prot_H-paniculata_contig61000.13804.1|Name=mRNA_H-paniculata_contig61000.13804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MMIYKRKIGEDGKVEKYQCRLVAHGNRQIKDIHFQEASSPAPVARTKMVS
LLAAIQDWELRYVDFEQAYL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2