mRNA_H-paniculata_contig60954.13794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60954.13794.1
Unique NamemRNA_H-paniculata_contig60954.13794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60954.13794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60954contigH-paniculata_contig60954:34..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60954.13794.1prot_H-paniculata_contig60954.13794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60954 41..391 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930682.3681805-UTR-H-paniculata_contig60954:33..401622930682.3681805-UTR-H-paniculata_contig60954:33..40Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60954 34..40 +
1691481404.2704427-UTR-H-paniculata_contig60954:33..401691481404.2704427-UTR-H-paniculata_contig60954:33..40Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60954 34..40 +
1622930682.5416846-UTR-H-paniculata_contig60954:391..5671622930682.5416846-UTR-H-paniculata_contig60954:391..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60954 392..567 +
1691481404.2927506-UTR-H-paniculata_contig60954:391..5671691481404.2927506-UTR-H-paniculata_contig60954:391..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig60954 392..567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930682.4191546-CDS-H-paniculata_contig60954:40..3911622930682.4191546-CDS-H-paniculata_contig60954:40..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60954 41..391 +
1691481404.2815309-CDS-H-paniculata_contig60954:40..3911691481404.2815309-CDS-H-paniculata_contig60954:40..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60954 41..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60954.13794.1

>prot_H-paniculata_contig60954.13794.1 ID=prot_H-paniculata_contig60954.13794.1|Name=mRNA_H-paniculata_contig60954.13794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MRMCRAPFSLPNNYLTSFLLYINTIQYTYFYMAQLRLSTHFPHLSTPFLS
PPREWLCLMPKNKIPKPFKHMTTIMLCTRLLRVQVHRSYRFAILQELLKE
QLDQPPPERNFPICGI*
back to top

mRNA from alignment at H-paniculata_contig60954:34..567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60954.13794.1 ID=mRNA_H-paniculata_contig60954.13794.1|Name=mRNA_H-paniculata_contig60954.13794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig60954:34..567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGTTATGCGTATGTGCCGCGCCCCTTTTTCATTACCTAATAATTACC
TAACTTCCTTTCTACTCTATATTAATACTATACAATATACATATTTCTAC
ATGGCCCAACTACGCCTTTCTACACATTTTCCACACCTTTCTACACCTTT
CCTCTCCCCGCCCCGGGAATGGCTGTGCCTCATGCCTAAGAACAAGATTC
CAAAGCCCTTTAAACACATGACTACGATTATGCTATGTACACGCCTCCTC
CGCGTACAAGTACATCGTTCCTACCGTTTCGCGATTTTACAGGAACTTCT
CAAAGAACAGTTGGATCAACCTCCTCCAGAACGAAATTTCCCAATTTGTG
GAATATAGACAACCCACTACGAAACGTCACGAATTGCGCCGGTGTTCTGT
CGTTACTCCTTAGATCCATCCTCGTATACTAAGTCGCAGCAACACCTACT
TTCATCCTTACGCGATCATGTATACAGTGCTACACTAATGATCATCAACA
GACAGGTCATTCCAAGACTCTGTGTCAAACACAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig60954:34..567+

>mRNA_H-paniculata_contig60954.13794.1 ID=mRNA_H-paniculata_contig60954.13794.1|Name=mRNA_H-paniculata_contig60954.13794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig60954:34..567+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTATGTGCCGCGCCCCTTTTTCATTACCTAATAATTACCTAACTTC
CTTTCTACTCTATATTAATACTATACAATATACATATTTCTACATGGCCC
AACTACGCCTTTCTACACATTTTCCACACCTTTCTACACCTTTCCTCTCC
CCGCCCCGGGAATGGCTGTGCCTCATGCCTAAGAACAAGATTCCAAAGCC
CTTTAAACACATGACTACGATTATGCTATGTACACGCCTCCTCCGCGTAC
AAGTACATCGTTCCTACCGTTTCGCGATTTTACAGGAACTTCTCAAAGAA
CAGTTGGATCAACCTCCTCCAGAACGAAATTTCCCAATTTGTGGAATATA
GATGCGTATGTGCCGCGCCCCTTTTTCATTACCTAATAATTACCTAACTT
CCTTTCTACTCTATATTAATACTATACAATATACATATTTCTACATGGCC
CAACTACGCCTTTCTACACATTTTCCACACCTTTCTACACCTTTCCTCTC
CCCGCCCCGGGAATGGCTGTGCCTCATGCCTAAGAACAAGATTCCAAAGC
CCTTTAAACACATGACTACGATTATGCTATGTACACGCCTCCTCCGCGTA
CAAGTACATCGTTCCTACCGTTTCGCGATTTTACAGGAACTTCTCAAAGA
ACAGTTGGATCAACCTCCTCCAGAACGAAATTTCCCAATTTGTGGAATAT
AG
back to top