prot_H-paniculata_contig60875.13782.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60875.13782.1
Unique Nameprot_H-paniculata_contig60875.13782.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
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BLAST of mRNA_H-paniculata_contig60875.13782.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.640e-10
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:    2 AAWDDLVSKYQNSSKQRRRLLMRQLDGLSMTEKQDPDILLTRVFQLRDELEYTGEIISEDRLTDIVLEGLSANYDMI 78
            A W +L SK+Q + + RRR L R+L+  +M    DPDI +T V+ L ++L + G  +++++L DI+L+GL A Y +I
Sbjct:  234 AVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLI 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60875.13782.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE3.640e-1040.26Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..89
e-value: 9.7E-13
score: 48.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60875contigH-paniculata_contig60875:507..824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60875.13782.1mRNA_H-paniculata_contig60875.13782.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60875 507..824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60875.13782.1 ID=prot_H-paniculata_contig60875.13782.1|Name=mRNA_H-paniculata_contig60875.13782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
KAAWDDLVSKYQNSSKQRRRLLMRQLDGLSMTEKQDPDILLTRVFQLRDE
LEYTGEIISEDRLTDIVLEGLSANYDMIKYNAERDPDFSLFEIEGTLRNM
FATALQ
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