mRNA_H-paniculata_contig60875.13782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60875.13782.1
Unique NamemRNA_H-paniculata_contig60875.13782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig60875.13782.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.640e-10
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    4 AAWDDLVSKYQNSSKQRRRLLMRQLDGLSMTEKQDPDILLTRVFQLRDELEYTGEIISEDRLTDIVLEGLSANYDMI 234
            A W +L SK+Q + + RRR L R+L+  +M    DPDI +T V+ L ++L + G  +++++L DI+L+GL A Y +I
Sbjct:  234 AVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEYHLI 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60875.13782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE3.640e-1040.26Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60875contigH-paniculata_contig60875:507..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.9033656-CDS-H-paniculata_contig60875:506..8241622930680.9033656-CDS-H-paniculata_contig60875:506..824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60875 507..824 -
1691481403.6294286-CDS-H-paniculata_contig60875:506..8241691481403.6294286-CDS-H-paniculata_contig60875:506..824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60875 507..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60875.13782.1prot_H-paniculata_contig60875.13782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60875 507..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60875.13782.1

>prot_H-paniculata_contig60875.13782.1 ID=prot_H-paniculata_contig60875.13782.1|Name=mRNA_H-paniculata_contig60875.13782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
KAAWDDLVSKYQNSSKQRRRLLMRQLDGLSMTEKQDPDILLTRVFQLRDE
LEYTGEIISEDRLTDIVLEGLSANYDMIKYNAERDPDFSLFEIEGTLRNM
FATALQ
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mRNA from alignment at H-paniculata_contig60875:507..824-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60875.13782.1 ID=mRNA_H-paniculata_contig60875.13782.1|Name=mRNA_H-paniculata_contig60875.13782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig60875:507..824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCAGCGTGGGATGACCTCGTTTCCAAGTACCAAAACTCTTCAAAACA
GAGGCGTCGTTTACTCATGAGACAGCTAGATGGGTTGTCGATGACTGAGA
AACAAGATCCTGATATTCTTCTGACTCGAGTATTTCAGCTACGCGACGAG
CTAGAATATACGGGGGAAATAATCTCAGAAGACCGTTTGACGGACATCGT
ACTGGAAGGGTTATCAGCTAATTATGACATGATAAAGTACAACGCTGAAC
GCGATCCCGACTTCAGTCTCTTTGAAATCGAGGGAACTTTGCGGAACATG
TTTGCAACCGCGTTGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig60875:507..824-

>mRNA_H-paniculata_contig60875.13782.1 ID=mRNA_H-paniculata_contig60875.13782.1|Name=mRNA_H-paniculata_contig60875.13782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig60875:507..824- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCAGCGTGGGATGACCTCGTTTCCAAGTACCAAAACTCTTCAAAACA
GAGGCGTCGTTTACTCATGAGACAGCTAGATGGGTTGTCGATGACTGAGA
AACAAGATCCTGATATTCTTCTGACTCGAGTATTTCAGCTACGCGACGAG
CTAGAATATACGGGGGAAATAATCTCAGAAGACCGTTTGACGGACATCGT
ACTGGAAGGGTTATCAGCTAATTATGACATGATAAAGTACAACGCTGAAC
GCGATCCCGACTTCAGTCTCTTTGAAATCGAGGGAACTTTGCGGAACATG
TTTGCAACCGCGTTGCAAAAAGCAGCGTGGGATGACCTCGTTTCCAAGTA
CCAAAACTCTTCAAAACAGAGGCGTCGTTTACTCATGAGACAGCTAGATG
GGTTGTCGATGACTGAGAAACAAGATCCTGATATTCTTCTGACTCGAGTA
TTTCAGCTACGCGACGAGCTAGAATATACGGGGGAAATAATCTCAGAAGA
CCGTTTGACGGACATCGTACTGGAAGGGTTATCAGCTAATTATGACATGA
TAAAGTACAACGCTGAACGCGATCCCGACTTCAGTCTCTTTGAAATCGAG
GGAACTTTGCGGAACATGTTTGCAACCGCGTTGCAA
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