mRNA_H-paniculata_contig60874.13781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60874.13781.1
Unique NamemRNA_H-paniculata_contig60874.13781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: D1J743_ECTSI (30S ribosomal protein S17, chloroplastic n=34 Tax=Phaeophyceae TaxID=2870 RepID=D1J743_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.410e-51
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A8F0FB08_9PHAE (Ribosomal protein S17 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB08_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 4.520e-47
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            MVKLQRLGIVISDKMQKSVVVAVEYRY+H+FYSK+IVRTKRYLAHD  NSCNIGD++LLEESRPLSKKKRWVVKEILNKAVIVN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYRHQFYSKIIVRTKRYLAHDEINSCNIGDEVLLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A141BSN2_9PHAE (30S ribosomal protein S17, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN2_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.350e-45
Identity = 70/84 (83.33%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            MVKLQRLGIVISDKMQKSVVVAVEYRYKH+FYSK++ RTKRYLAHD ENSCNIGD++L+EESRPLSK+KRW+VK+ILNKAV+++
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHQFYSKIVTRTKRYLAHDEENSCNIGDEVLVEESRPLSKRKRWIVKKILNKAVLIS 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A2R4QQ26_9PHAE (30S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ26_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.520e-44
Identity = 72/84 (85.71%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            MVKLQRLGIVIS+KMQKSVVVAVEYR KH+FYSKV+VRTKRYLAHD EN+CNIGD+++LEESRPLSK+KRWVVK+ILNK+VIVN
Sbjct:    1 MVKLQRLGIVISNKMQKSVVVAVEYRCKHQFYSKVVVRTKRYLAHDEENNCNIGDEVILEESRPLSKRKRWVVKKILNKSVIVN 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A8F0F7M3_9PHAE (Ribosomal protein S17 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M3_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 5.720e-41
Identity = 68/84 (80.95%), Postives = 79/84 (94.05%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            MVK QRLGIVIS+KMQKSVV+AVE+R KH+FYSK+IVRT+RYLAHD  N CNIGD++L+EESRPLSKKKRWV+K+ILNKAVIVN
Sbjct:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHQFYSKIIVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A2I4Q2H6_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.050e-38
Identity = 63/83 (75.90%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIV 249
            M K QR+GI+IS+KMQKSVVVA+EYRYKHK YSK+IV+TKRYLAHD  N+CNIGD++L+E SRPLSKKKRWVV+EILNKA ++
Sbjct:    1 MKKQQRVGIIISNKMQKSVVVAIEYRYKHKIYSKIIVKTKRYLAHDELNNCNIGDEVLVEASRPLSKKKRWVVREILNKAELI 83          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A8E5XRI7_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.470e-36
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVI 246
            M K Q++GIVIS+KMQKSVVVAVEYRY+H  YSK ++ TKRY+AHD  NSCNIGD++LLEESRPLSKKKRWVVK +L+ +VI
Sbjct:    1 MTKQQKVGIVISNKMQKSVVVAVEYRYRHAVYSKTVIETKRYMAHDQSNSCNIGDEVLLEESRPLSKKKRWVVKNVLSTSVI 82          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A7S6ZPB3_9STRA (30S ribosomal protein S17, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.770e-35
Identity = 52/80 (65.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:   13 QRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            +++GI+IS+KM KSV+VAVEYRY+H  YSK+++RT+RY+AHD  N CNIGDQ++L+ESRPLSK+KRW+VKEILN +++ N
Sbjct:    5 EKIGIIISNKMSKSVIVAVEYRYRHPIYSKIVLRTRRYMAHDEHNDCNIGDQVILQESRPLSKRKRWIVKEILNNSILSN 84          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: A0A8E5BF39_9PHAE (Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BF39_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.180e-35
Identity = 54/79 (68.35%), Postives = 72/79 (91.14%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNK 237
            MV++Q+LGIV+S+KMQKS+VVAVEYRYKHKFYSK++++TKR+LAHD  N CN+GD++L+EESRPLSK K W+VK+I  +
Sbjct:    1 MVRVQKLGIVVSNKMQKSIVVAVEYRYKHKFYSKIVIQTKRFLAHDNNNKCNLGDKVLIEESRPLSKTKHWIVKKIFTR 79          
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Match: B7T1X5_VAULI (30S ribosomal protein S17, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X5_VAULI)

HSP 1 Score: 117 bits (293), Expect = 9.840e-33
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 252
            M K +++GIVIS+KM KS+V  VEYRY+   YSK+IV TKRY+AHD  N CNIGD++LLE SRPLSKKKRWVVK+IL K++I N
Sbjct:    1 MSKTEKIGIVISNKMNKSIVAEVEYRYRDPIYSKIIVSTKRYMAHDEINECNIGDKVLLEPSRPLSKKKRWVVKQILTKSIISN 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60874.13781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J743_ECTSI2.410e-51100.0030S ribosomal protein S17, chloroplastic n=34 Tax=... [more]
A0A8F0FB08_9PHAE4.520e-4791.67Ribosomal protein S17 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSN2_9PHAE4.350e-4583.3330S ribosomal protein S17, chloroplastic n=14 Tax=... [more]
A0A2R4QQ26_9PHAE2.520e-4485.7130S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0F7M3_9PHAE5.720e-4180.95Ribosomal protein S17 n=1 Tax=Protohalopteris sp. ... [more]
A0A2I4Q2H6_9PHAE1.050e-3875.9030S ribosomal protein S17, chloroplastic n=1 Tax=D... [more]
A0A8E5XRI7_9PHAE1.470e-3673.1730S ribosomal protein S17, chloroplastic n=1 Tax=I... [more]
A0A7S6ZPB3_9STRA1.770e-3565.0030S ribosomal protein S17, chloroplastic n=1 Tax=S... [more]
A0A8E5BF39_9PHAE2.180e-3568.35Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. Tax... [more]
B7T1X5_VAULI9.840e-3366.6730S ribosomal protein S17, chloroplastic n=1 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60874contigH-paniculata_contig60874:585..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D1J743
Preferred namerps17
KEGG koko:K02961
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1740@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.8451362-CDS-H-paniculata_contig60874:584..8391622930680.8451362-CDS-H-paniculata_contig60874:584..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60874 585..839 -
1691481403.617773-CDS-H-paniculata_contig60874:584..8391691481403.617773-CDS-H-paniculata_contig60874:584..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60874 585..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60874.13781.1prot_H-paniculata_contig60874.13781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60874 585..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60874.13781.1

>prot_H-paniculata_contig60874.13781.1 ID=prot_H-paniculata_contig60874.13781.1|Name=mRNA_H-paniculata_contig60874.13781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENS
CNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN*
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mRNA from alignment at H-paniculata_contig60874:585..839-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60874.13781.1 ID=mRNA_H-paniculata_contig60874.13781.1|Name=mRNA_H-paniculata_contig60874.13781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig60874:585..839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAAGTTGCAAAGACTTGGTATTGTCATAAGTGATAAAATGCAAAA AAGTGTTGTCGTTGCAGTAGAGTATCGTTATAAACATAAGTTTTATTCTA AAGTTATCGTAAGAACAAAACGTTATTTAGCTCATGACCCAGAGAATAGT TGTAATATTGGTGATCAAATTTTACTAGAAGAAAGTCGACCTTTGAGTAA AAAGAAACGCTGGGTAGTAAAGGAAATATTAAATAAAGCAGTAATCGTTA ATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig60874:585..839-

>mRNA_H-paniculata_contig60874.13781.1 ID=mRNA_H-paniculata_contig60874.13781.1|Name=mRNA_H-paniculata_contig60874.13781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig60874:585..839- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAAGTTGCAAAGACTTGGTATTGTCATAAGTGATAAAATGCAAAA
AAGTGTTGTCGTTGCAGTAGAGTATCGTTATAAACATAAGTTTTATTCTA
AAGTTATCGTAAGAACAAAACGTTATTTAGCTCATGACCCAGAGAATAGT
TGTAATATTGGTGATCAAATTTTACTAGAAGAAAGTCGACCTTTGAGTAA
AAAGAAACGCTGGGTAGTAAAGGAAATATTAAATAAAGCAGTAATCGTTA
ATTAAATGGTTAAGTTGCAAAGACTTGGTATTGTCATAAGTGATAAAATG
CAAAAAAGTGTTGTCGTTGCAGTAGAGTATCGTTATAAACATAAGTTTTA
TTCTAAAGTTATCGTAAGAACAAAACGTTATTTAGCTCATGACCCAGAGA
ATAGTTGTAATATTGGTGATCAAATTTTACTAGAAGAAAGTCGACCTTTG
AGTAAAAAGAAACGCTGGGTAGTAAAGGAAATATTAAATAAAGCAGTAAT
CGTTAATTAA
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