mRNA_H-paniculata_contig6087.13779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6087.13779.1
Unique NamemRNA_H-paniculata_contig6087.13779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI)

HSP 1 Score: 563 bits (1450), Expect = 4.040e-191
Identity = 378/517 (73.11%), Postives = 412/517 (79.69%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGGIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPD--PRRSS-WTKLG-IKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAP-----ESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYDCGE 1663
            MG+G+SHQTKLERE G IGDG+G+ERFFGLENFGNTCYCNSVLQALYFCEPLRHHLA++REED     GG         XXXXXXXX        SG +V+ +LA+LF+ IS QKRRSG LAPT+FLRTLRERNE FRGN QQDAHEFFNFVLNEMADS+VAR K      +E AA  Q+H+   XXXXXXXXXXXXXXXXXXXXXXXX      PRRSS W+K+   K  FGN  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                    ES  G+       +G    S  ++ S  +TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSV+ACLR+FSSTETLTKKNKFFCE+C ALQEAEKKIRLK LPRVLTLHLKRFKYVESL+NFSKLSHRVVFPLELR PNMT+  GE DADGRLYRLFAVVVHIGRG NHGHYVAVVKSGGRWLLFDD++VE V+E+VL+QCFGL+RPA AATNTGYLLLYDCGE
Sbjct:    1 MGVGASHQTKLEREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDT---SGG---------XXXXXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKL-----REEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAGVDGGGGNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVSACLRNFSSTETLTKKNKFFCETCYALQEAEKKIRLKRLPRVLTLHLKRFKYVESLENFSKLSHRVVFPLELRTPNMTDAAGEADADGRLYRLFAVVVHIGRGPNHGHYVAVVKSGGRWLLFDDEIVELVNEQVLKQCFGLARPASAATNTGYLLLYDCGE 500          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA)

HSP 1 Score: 401 bits (1030), Expect = 5.030e-130
Identity = 235/508 (46.26%), Postives = 281/508 (55.31%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGGIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYDCGE 1663
            MG GSS  +KLE++LG        ER++GLENFGNTCYCNSV+QALYFC PLR  L     +++ A                         +      S++ QLA+LFA+I+  KR SG +AP  F++TLRE NE FRGNMQQDAHEF+NF++N+MAD+L+                                                     R S+                                                                      K GD+       +P  TW+H +FQGVLTN+TKC+CCETV++RDEPF+DL LD+EQN SVTACLR+FS  ETLT  NKFFCE+C ALQEAEK++ L+ LPRVLTLHLKRFKY+E + NFSKLSHRVVFPLELR PNM       DADG LY LFAVVVHIGRGLNHGHYVAVVKS GRW+LFDDD+VE VDE VL + FGLS     +TNTGYLL YDCGE
Sbjct:    1 MGTGSSSPSKLEQDLGYTEPVEAGERYYGLENFGNTCYCNSVMQALYFCGPLRTELLARHTQNSSAT-------------------VMATGSSQYPAGSLLYQLAELFAVITNTKRLSGRVAPQAFMQTLRETNELFRGNMQQDAHEFYNFIINDMADTLL-----------------------------------------------------RMSA---------------------------------------------------------------------DKSGDQ------AAPKTTWIHDLFQGVLTNETKCICCETVTHRDEPFVDLPLDIEQNCSVTACLRNFSRMETLTGCNKFFCETCCALQEAEKRMCLRRLPRVLTLHLKRFKYMEQIQNFSKLSHRVVFPLELRMPNMARDSA-ADADGILYHLFAVVVHIGRGLNHGHYVAVVKSQGRWMLFDDDLVEVVDEAVLHKVFGLSNHLGGSTNTGYLLFYDCGE 360          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A388KQF3_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQF3_CHABU)

HSP 1 Score: 329 bits (843), Expect = 2.120e-99
Identity = 223/513 (43.47%), Postives = 285/513 (55.56%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGGIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREG-GASTGGGQVAPESG-EGLGSARHTQKG-----GDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYDC 1657
            MG  SS   +LE+ LG   +    ER+FGLENFGNTCYCNSVLQALYFC P R HL E                              K      +  +++  LADLF  I+ QKR++G +AP  F++ +++ NE FR  M QDAHEF NF+LNE+AD L    K I                                            P    S+ ++ G   G                 XXXXXXXXXXXXXX  G +G   ST   Q+  +S   G G+A     G             S  P  TWVH IFQG LTN+TKCLCCETV+ RDE F+DLSLD+EQNSS+T+CLR+FSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N T+    ++A+   Y LFAVVVH+G G NHGHYV++VKS   WL FDDD VEP+DE  ++  FG ++     T+ GY+L Y+C
Sbjct:  123 MGTSSS---RLEKALGEFPEC---ERYFGLENFGNTCYCNSVLQALYFCVPFREHLLEY---------------------------FGKCKGFPEADENLLTCLADLFGQINSQKRKTGVIAPKRFVQRVKKENELFRSYMHQDAHEFLNFLLNELADILAREAKGI----------------------------SSLSGNGTNSANGGFTPGTSSSASSRTG---GANQPSVNNGRIPGSGGSXXXXXXXXXXXXXXGIGGKGLHISTSQSQLQFQSNVSGAGAASSAANGLXXXXXXXRPNGMSGGPVVTWVHEIFQGTLTNETKCLCCETVTARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDRCCSLQEAQKRMKIKVPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE---YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLYFDDDNVEPIDESTVQTFFGSTQEMSNNTDHGYILFYEC 568          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A1Y1HV22_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV22_KLENI)

HSP 1 Score: 316 bits (809), Expect = 9.330e-97
Identity = 205/498 (41.16%), Postives = 272/498 (54.62%), Query Frame = 2
Query:  164 TKLERELG-GIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            +KLE+ LG    +G   E +FGLENFGNTCYCNSVLQALYFC P R  L +   +    +                               +++  LADLF+ IS QK+++G +AP  F++ L+++NE FR  M QDAHEF NF+LNE+A++L    K  R+ +                                       AP P  S     G + G  NXXXXXXXXXXXXXX                GR+                                       + TWVH IFQG++TN+T+CLCCET+++RDE F DLSLD+EQNSS+T+CLR+FSSTETL  +NKFFC+ C +LQEA+K++++K  P++L LHLKRFKY+E L    KL +RVVFPLELR  N  EG    +A+   Y LF VVVH+G G NHGHYV++VKS   WL FDD+ VEP+DE +++  FG ++     T+ GY+L Y+
Sbjct:    6 SKLEKALGEAFPEG---EHYFGLENFGNTCYCNSVLQALYFCAPFREKLLKYAAKIPKPVP--------------------------EPDETLLSSLADLFSQISTQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELAENLEKEEKAPRESE---------------------------------------APTPSTSGGHGEGEEFGKANXXXXXXXXXXXXXXKSGAQ-----------GRQ---------------------------------------AKTWVHEIFQGLVTNETRCLCCETLTSRDETFFDLSLDIEQNSSITSCLRNFSSTETLNAENKFFCDKCCSLQEAQKRMKIKAAPQILALHLKRFKYIEQLGRHKKLMYRVVFPLELRLCNTVEGGDGAEAE---YSLFGVVVHVGSGPNHGHYVSLVKSHSHWLFFDDESVEPIDESMVQSFFGSTQEYSNNTDHGYILFYE 382          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A484MYH1_9ASTE (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Convolvulaceae TaxID=4118 RepID=A0A484MYH1_9ASTE)

HSP 1 Score: 310 bits (794), Expect = 8.250e-95
Identity = 194/498 (38.96%), Postives = 264/498 (53.01%), Query Frame = 2
Query:  164 TKLERELGG-IGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            +KLE+ LG    +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L E    + +                           L ++  S++  LADLF  IS QK+++G +AP  F++ L+++NE FR  M QDAHEF N++LNE+ D L        +++  AA  D                                    R +S +   +  G                                               P++   + S  HT     E        P  TWVH+ FQG+LTN+T+CLCCETV+ RDE F DLSLD+EQNSS+T+CL++FSSTETL  ++KFFC+ C +LQEA+K++++K  P +L +HLKRFKY+E L  + KLS+RVVFPLEL+  N  E   E DA+   Y LF+VVVH+G G NHGHYV++VKS   WL FDDD VE +DE  ++  FG ++   + T+ GY+L Y+
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYSNNKN---------------------------LADADESLLTCLADLFMQISSQKKKTGVIAPRRFVQKLKKQNEIFRSYMHQDAHEFLNYLLNELVDIL--------EKESNAAKSD------------------------------------RETSPSSENVANG-----------------------------------------------PKA---ILSNGHTNGNHKE--------PLVTWVHKNFQGILTNETRCLCCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE---EADAE---YSLFSVVVHVGTGPNHGHYVSLVKSHNHWLFFDDDSVEMIDESAVQTFFGSAQEYSSNTDHGYILFYE 365          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A9RF40_PHYPA (Predicted protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A9RF40_PHYPA)

HSP 1 Score: 310 bits (793), Expect = 8.700e-95
Identity = 195/506 (38.54%), Postives = 263/506 (51.98%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGG-IGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            MG  SS   KLE+ LG    +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L E                              +   +  S  +++  L++LF  I+ QK+++G +AP  F++ +R++NE FR  M QDAHEF NF+LNE+ D LV          +EA A +                                                                                        S  G   +PE   G G+      G  +        P  TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+T+CLR+FSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N T+    ++A+   Y LFAVVVH+G G NHGHYV++VKS   WL FDD+ VE +DE +++  FG ++     T+ GY+L Y+
Sbjct:    1 MGASSS---KLEKVLGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEY---------------------------CGQKKPVAESEENLLTCLSELFTQINSQKKKTGVIAPKRFVQRVRKQNELFRSYMHQDAHEFLNFLLNELVDILV----------KEAQAAN----------------------------------------------------------------------------------------SNSGSHTSPEKVVGNGATNGLANGNHKE-------PVVTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE---YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESIVQTFFGSTQEYSNNTDHGYILFYE 365          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A7S3A5M8_9RHOD (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5M8_9RHOD)

HSP 1 Score: 310 bits (793), Expect = 6.400e-94
Identity = 202/539 (37.48%), Postives = 273/539 (50.65%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGGIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLR--------------HHLAE----LREEDAHAIGG--------GGNXXXXXXXXXXXXXXXTKASALNNS---GN--SVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGS---ARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            MG+GSS   KL++ L    D   +E++FGLENFGNTCYCNSVLQALYFCEP R               H AE    L    +HA  G        G                   AS   N    GN  +++  L DLF  I+ QK+R+G + P  F+  LR+ NE FR  M QDAHEF N+VLN + ++L   NK    ++++A  L                                                                                                 PE+  G+ S   +  T   GD+           T+VH +F+G L+N+T+CLCCETV+ R EPF+D+S+D+ QNSS+T+CLR+FSSTE L K++KF+C++C + QEAEK++++K LPR+L LHLKRFKYVE ++ + KLS+RVVFPLE R  N ++   E +   R Y LFAVVVH+G G NHGHYV ++KS G+WLLFDDD VEP DE  L+  FG ++    +T +GY+L Y+
Sbjct:    1 MGVGSSTANKLDKAL--ATDLPEDEKYFGLENFGNTCYCNSVLQALYFCEPFRKQVLLYDRDRKERIRHNAEQQKILNGNGSHAASGLKSAVKGVGNVINVAGNQQGSGGGSPASASTATNGMGPGNEETLLSALGDLFTQITNQKKRTGSVPPKTFVNRLRQENELFRSYMHQDAHEFLNYVLNNVVENL---NKEEELKKKDAKGLP------------------------------------------------------------------------------------------------PEATNGVSSHSASSGTTVEGDDPKLEKKVPK--TFVHDLFEGHLSNETRCLCCETVTQRVEPFLDVSVDIAQNSSLTSCLRNFSSTELLNKEDKFYCDACCSYQEAEKRMKIKKLPRILALHLKRFKYVEHVNKYKKLSYRVVFPLEYRLCNTSD---EIEDPDRCYSLFAVVVHVGSGPNHGHYVVLIKSHGQWLLFDDDCVEPKDESELQSVFGCTQETSTSTESGYILFYE 433          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A176W0E8_MARPO (USP domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W0E8_MARPO)

HSP 1 Score: 307 bits (786), Expect = 9.610e-94
Identity = 194/509 (38.11%), Postives = 269/509 (52.85%), Query Frame = 2
Query:  140 MGIGSSHQTKLERELGG-IGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYDCGE 1663
            M +GSS  +KLE+ LG    +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L E      HA                     +++     + ++++  L++LF  I+ QK+++G +AP  F++ ++++NE FR  M QDAHEF NF+LNE+ D L           ++ A    K    Q                          PD                                                          ++A  +  G+ +  H               P  TWVH+IFQG LTN+T+CL CET++ RDE F+DLSLD+EQNSS+T+CLR+FSSTETL  ++KFFC+ C +LQEA+K++++K  PR+L LHLKRFKY+E L  + KLS+RVVFPLEL+  N T+    ++A+   Y LFAVVVH+G G NHGHYV++VKS   WL FDD+ VE +DE V++  FG ++     T+ GY+L Y+  E
Sbjct:    1 MVMGSSG-SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFRDQLLE------HA---------------------SRSKGSGETDDNLLTCLSELFTQINSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDIL-----------EKEAKASSKPTSGQVH------------------------PD----------------------------------------------------------KLANGTANGIANGNHPH-------------PVVTWVHKIFQGTLTNETRCLRCETITARDETFLDLSLDIEQNSSITSCLRNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKSPPRILALHLKRFKYIEQLGRYKKLSYRVVFPLELKLCNTTDDAPGSEAE---YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEIIDESVVQTFFGSTQEYSNNTDHGYILFYESLE 369          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: F6HWM1_VITVI (USP domain-containing protein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=F6HWM1_VITVI)

HSP 1 Score: 306 bits (784), Expect = 1.720e-93
Identity = 197/501 (39.32%), Postives = 259/501 (51.70%), Query Frame = 2
Query:  164 TKLERELGG-IGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSS---WTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            +KLE+ LG    +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L E                             T    L ++  +++  LADLF  IS QK+++G +AP  F++ L+++NE FR  M QDAHEF NF+LNE+ D L          ++EA+A                                    DP  SS    T  G KT   N                                                         QK            P  TWVH+ FQG+LTN+T+CL CETV+ RDE F+DLSLD+EQNSS+T+CL++FSSTETL  ++KFFC+ C +LQEA+K++++K  P +L +HLKRFKY+E L  + KLS+RVVFPLEL+  N  E     DAD   Y LFAVVVH+G G NHGHYV++VKS   WL FDD+ VE +DE  ++  FG ++   + T+ GY+L Y+
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEY---------------------------YTNNKNLADAEENLLTCLADLFMQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL----------EKEASA---------------------------------SKSDPETSSPPEKTANGPKTAQANG-------------------------------------------------------VQK-----------EPLVTWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVE-----DADSE-YSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESSVQTFFGSAQEYSSNTDHGYILFYE 361          
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Match: A0A7S0MUP8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MUP8_9CHLO)

HSP 1 Score: 305 bits (781), Expect = 2.200e-93
Identity = 187/500 (37.40%), Postives = 255/500 (51.00%), Query Frame = 2
Query:  155 SHQTKLERELGGIGDGNGEERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNXXXXXXXXXXXXXXXTKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFFRGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQXXXXXXXXXXXXXXXXXXXXXXXXHAPDPRRSSWTKLGIKTGFGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGGASTGGGQVAPESGEGLGSARHTQKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDLSLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLPRVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRLYRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFGLSRPAVAATNTGYLLLYD 1654
            S  +KLE+ LG +     +ERFFGLENFGNTCYCNSVLQALYFC P R+ L E        +G                          ++  +++  LADLF  I  QK+++G ++P  F+  L++ NE FR  M QDAHEF NF+LNE+ +                  L+++H                              PD  +++                                                        PE                         P  TWVH +FQGVLTN+TKCLCCETV++R+E F+DLSLD+EQN+S++ CL++FS+TETL  ++KFFC+ C +LQEA+K +++K LPRVL LHLKRFKY+ESL  + KL HRVVFP+EL+  N  +   +   D  +Y LFAVVVH+G G NHGHYV++VKS   WL FDD+ VEP++E V++  FG ++  +  T  GYLL Y+
Sbjct:    3 SQGSKLEKTLGDLPV---DERFFGLENFGNTCYCNSVLQALYFCPPFRNKLIEYNS----TLG-------------------------KDARENLLTCLADLFYQIHVQKKKTGVISPKRFVGRLKQDNELFRSFMHQDAHEFLNFLLNEICE-----------------VLEKQH------------------------------PDKHKAT--------------------------------------------------------PEK------------------------PVKTWVHDVFQGVLTNETKCLCCETVTSREETFLDLSLDIEQNTSISGCLKNFSATETLNHEDKFFCDKCCSLQEAQKCMKVKALPRVLALHLKRFKYIESLGRYKKLCHRVVFPMELKMCNTAD---DAVNDENVYNLFAVVVHLGSGPNHGHYVSLVKSHNHWLYFDDESVEPIEESVVQSYFGSTQDGMNNTEHGYLLFYE 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6087.13779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ3_ECTSI4.040e-19173.11Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835Z200_9STRA5.030e-13046.26Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A388KQF3_CHABU2.120e-9943.47Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Char... [more]
A0A1Y1HV22_KLENI9.330e-9741.16Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]
A0A484MYH1_9ASTE8.250e-9538.96Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Conv... [more]
A9RF40_PHYPA8.700e-9538.54Predicted protein n=5 Tax=Physcomitrium patens Tax... [more]
A0A7S3A5M8_9RHOD6.400e-9437.48Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Rhod... [more]
A0A176W0E8_MARPO9.610e-9438.11USP domain-containing protein n=2 Tax=Marchantia p... [more]
F6HWM1_VITVI1.720e-9339.32USP domain-containing protein n=6 Tax=Mesangiosper... [more]
A0A7S0MUP8_9CHLO2.200e-9337.40Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6087contigH-paniculata_contig6087:7221..12480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score572.4
Seed ortholog evalue2.2e-160
Seed eggNOG ortholog2880.D8LBJ3
Preferred nameUSP46
KEGG koko:K11842,ko:K11872
Hectar predicted targeting categoryother localisation
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1864@1,KOG1864@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-27_003770.1
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons7
Model size2393
Cds size1566
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.6229796-UTR-H-paniculata_contig6087:7220..79471622930680.6229796-UTR-H-paniculata_contig6087:7220..7947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6087 7221..7947 -
1691481403.4768612-UTR-H-paniculata_contig6087:7220..79471691481403.4768612-UTR-H-paniculata_contig6087:7220..7947Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6087 7221..7947 -
1622930680.7592828-UTR-H-paniculata_contig6087:12380..124801622930680.7592828-UTR-H-paniculata_contig6087:12380..12480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6087 12381..12480 -
1691481403.585141-UTR-H-paniculata_contig6087:12380..124801691481403.585141-UTR-H-paniculata_contig6087:12380..12480Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6087 12381..12480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.6362743-CDS-H-paniculata_contig6087:7947..80341622930680.6362743-CDS-H-paniculata_contig6087:7947..8034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 7948..8034 -
1691481403.5031476-CDS-H-paniculata_contig6087:7947..80341691481403.5031476-CDS-H-paniculata_contig6087:7947..8034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 7948..8034 -
1622930680.6483839-CDS-H-paniculata_contig6087:8529..86531622930680.6483839-CDS-H-paniculata_contig6087:8529..8653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 8530..8653 -
1691481403.5143752-CDS-H-paniculata_contig6087:8529..86531691481403.5143752-CDS-H-paniculata_contig6087:8529..8653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 8530..8653 -
1622930680.6650693-CDS-H-paniculata_contig6087:9065..92561622930680.6650693-CDS-H-paniculata_contig6087:9065..9256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 9066..9256 -
1691481403.5257933-CDS-H-paniculata_contig6087:9065..92561691481403.5257933-CDS-H-paniculata_contig6087:9065..9256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 9066..9256 -
1622930680.6811256-CDS-H-paniculata_contig6087:9655..98021622930680.6811256-CDS-H-paniculata_contig6087:9655..9802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 9656..9802 -
1691481403.5435243-CDS-H-paniculata_contig6087:9655..98021691481403.5435243-CDS-H-paniculata_contig6087:9655..9802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 9656..9802 -
1622930680.6932821-CDS-H-paniculata_contig6087:10192..107411622930680.6932821-CDS-H-paniculata_contig6087:10192..10741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 10193..10741 -
1691481403.5543525-CDS-H-paniculata_contig6087:10192..107411691481403.5543525-CDS-H-paniculata_contig6087:10192..10741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 10193..10741 -
1622930680.722066-CDS-H-paniculata_contig6087:11087..113841622930680.722066-CDS-H-paniculata_contig6087:11087..11384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 11088..11384 -
1691481403.56464-CDS-H-paniculata_contig6087:11087..113841691481403.56464-CDS-H-paniculata_contig6087:11087..11384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 11088..11384 -
1622930680.738483-CDS-H-paniculata_contig6087:12209..123801622930680.738483-CDS-H-paniculata_contig6087:12209..12380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 12210..12380 -
1691481403.574635-CDS-H-paniculata_contig6087:12209..123801691481403.574635-CDS-H-paniculata_contig6087:12209..12380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6087 12210..12380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6087.13779.1prot_H-paniculata_contig6087.13779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6087 7948..12380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6087.13779.1

>prot_H-paniculata_contig6087.13779.1 ID=prot_H-paniculata_contig6087.13779.1|Name=mRNA_H-paniculata_contig6087.13779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=522bp
MKTPGPCLYLLVAMGIGSSHQTKLERELGGIGDGNGEERFFGLENFGNTC
YCNSVLQALYFCEPLRHHLAELREEDAHAIGGGGNGGASGSSGGAGSAGG
TKASALNNSGNSVIMQLADLFALISRQKRRSGCLAPTDFLRTLRERNEFF
RGNMQQDAHEFFNFVLNEMADSLVARNKRIRQQQQEAAALDQKHRFNQSQ
SSNHQQSQQPSSTHQHQHQQQQHAPDPRRSSWTKLGIKTGFGNGSKNGPP
PHPGTETTTSSVATDQGTEQRTVGREGGASTGGGQVAPESGEGLGSARHT
QKGGDENSASSSTSPSDTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMDL
SLDVEQNSSVTACLRSFSSTETLTKKNKFFCESCNALQEAEKKIRLKHLP
RVLTLHLKRFKYVESLDNFSKLSHRVVFPLELRAPNMTEGPGETDADGRL
YRLFAVVVHIGRGLNHGHYVAVVKSGGRWLLFDDDVVEPVDEEVLRQCFG
LSRPAVAATNTGYLLLYDCGE*
back to top

mRNA from alignment at H-paniculata_contig6087:7221..12480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6087.13779.1 ID=mRNA_H-paniculata_contig6087.13779.1|Name=mRNA_H-paniculata_contig6087.13779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5260bp|location=Sequence derived from alignment at H-paniculata_contig6087:7221..12480- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACGACCGATGTCCAAGATTAAACACAATGCACCTCTGGGTCGTTTTC GAATCGTGTTAAGAAAATCTAGAGTCGTATTCCAAGAGTAGGGGGTTCGC ATGAAAACACCAGGACCCTGCTTGTACCTCTTAGTGGCTATGGGTATCGG GTCCTCGCACCAGACAAAGCTCGAGCGTGAGCTTGGAGGCATAGGAGACG GGAATGGGGAAGAGAGATTCTTCGGATTAGAGAACTTCGGCAATACGTGC TACTGCAACTCAGTTCTGCAGGCAAGTATTCCTGGGTACTGCGGATTAAC TTGAACGCAAACTTTACCAGCTTAGGTCAACACAGGTGTAGCCGCCATCT GGCTTGCACCCCTTACCATCAGGACTCGGGGGCGTTCACTAATAAGCTTT TGGTAATTGATATGTAGAAAATTGTCTGTATAATATATTGTGCATTATAC ATAAGACATGTAAACGGAACCAGTCCAGTCACGATTGAGCTGCATGATTG AATTCTATAGGGCATCGTATGGTGCTATTTGTCTGTTGCTCTCAAGACAT GATGGTGTTCTCCTTCCTCTATATCGGAGGTGCTCTATTGTTGCTATTGG TACGGTTCGTTGGTTGTTGAGGTTGTTGTTGCGATTCTATTAGTGGTGGT CAACAACTTAATGTTGGATTTAGATACCCTTTGTGACTCGTACACCGCAC CGCCTCTCCTTCCCCGTACTGGTACACGTACGTGACAGTATCAATAGTAG ACTGTACAGCGGATCCGTTGCCGACTTATCTTTTTTGTGGTCTACTTATA GATGGAAGTCCCCCCATGATCTTATTTCCCAGCTGCATTTGACCTGGTCA AAGTTCTGTATGATTTACTGAAGCCTCGATATGACGCAGCAAAGCATGGC CAGGGATAATGGGTGCTTTGTCTCGCTATGGCGACAGCAACTTCACCTCA ACGGTGCATTTATGACAGAACCAAAAATGGTCATGGATGATTTGCGATGA AACTCGGTTAACAGGGCTTCGGCGAAGTAAGAAGCATCGTATTATTAAAA CGCTGACGATACCAATTGCGAATGTCTGCATGTTGCGTGTGAACAGGCAC TGTACTTCTGCGAACCGCTTAGACATCACCTCGCGGAACTGCGAGAAGAG GATGCCCACGCAATTGGCGGGGGTGGCAATGGGGGTGCAAGTGGTAGCAG CGGTGGTGCGGGATCAGCAGGAGGAACCAAGGCGTCTGCCTTAAATAACA GCGGCAACAGCGTGATTATGCAGCTTGCCGATCTCTTTGCGCTCATCTCT AGGCAAAAGCGACGCTCGGGCTGCTTGGCACCGACTGATTTCTTGCGAAC GTTGCGGGAAAGGAATGAGTTTTTCCGAGGAAACATGCAGCAGGTGATGA GCACGGTAGCATTTGCTGTTTCACATCGAAGCGTTCAGAGTGAAATAAAG TGGACTGGGTCTGAAAAGGAAACCAAGCTGCAGCCTGCGTGTTCCTCTCT CATCCAATGGATGGGCGGCGCCTTCGTCAACATCACGTCGAGGCAGGGGT GCACGTACATCGGATTTTCGATTTGGCGATCTACCGTCCTGCAAATGGTG CATGTGCTGGGTGCAAGCAGCTCCCGTTATATTGAAATACACTCCTCGCC TCAGCTCCCATCTTCTCCCTCATCCCCTTAGCCCCTCCCTCCCGCCTTTC CTTCCCACTTTGAATCCCCCCCGAACATGGAAAACAAAGGATGCGCACGA GTTCTTCAATTTTGTGTTGAACGAGATGGCCGACAGCCTGGTGGCAAGAA ACAAGCGGATACGACAGCAGCAGCAAGAGGCAGCCGCACTCGATCAGAAG CACCGCTTCAACCAATCCCAAAGTTCAAATCACCAGCAATCACAACAGCC ATCATCAACACACCAGCACCAGCACCAGCAACAACAACACGCTCCTGACC CCCGTCGCTCAAGCTGGACTAAATTGGGAATAAAAACTGGGTTTGGGAAT GGATCAAAGAACGGACCACCACCACACCCGGGAACCGAAACAACGACATC GTCGGTGGCGACTGACCAAGGCACAGAGCAGCGCACAGTCGGGCGGGAGG GGGGGGCTTCTACAGGAGGGGGTCAGGTAGCACCCGAAAGTGGCGAGGGT CTGGGTTCCGCTAGGCACACACAAAAAGGTGGCGACGAAAACTCGGCATC GTCATCGACGTCGCCTTCTGACACCTGGGTCCATCGAATATTCCAGGGCG TGCTAACGAACCAGACTAAATGCCTTTGCTGCGAGACGGTGGGTATTAGA CACTGCCGTTTTCTCATCCCCTGCAAGGAGGGAGGGGTGTTAAGGGTTGT TATTGTTGCCGATTGGAGGTGCAGTTTTGTTCGGTACTTTCGTGAGTACG CGGCTACGAGAGGGCGGAGCAGCACGGCATCGGCATACTTGCTGCCCTCG ACAGGTTGTACTGCCATATTTTGGCCAGAATCTGGATTGAACGGAGTGTT TTCGAAGTCGAAAATTTGAGTGATTGTTGTGCGTCAACGTAATTTGGTGC GGTATCTTTATCAGACGTATTGTACAATCAAGAATCCGTTGCATAGGCTG GTGTATTATCGCTTTACGCTCGCGTTCGTCAGTCGCTCAGAGGTAGTTGT GCATTCGAACCTCAACACACGAAAGCAGGTCAGCAACCGAGACGAGCCGT TCATGGACCTCTCTCTCGACGTGGAGCAAAACTCGTCCGTGACGGCGTGT CTTCGCAGTTTCAGCAGCACTGAGACTTTAACAAAGAAGAACAAGTTTTT CTGTGAAAGCTGCAATGCGTTACAGGTTCGACATTGTTTCTGCTGTTGCT GGGAGGATACATCGGAGGGGCTTGACTTTGAGTTCTGCAGCTTTCGCGTT TGCGTGTTGTATCTCAAATGTCCATCGAAGGGGGTTGATATAGCCGAAAC AATGTCAGCAATTCTTTTCAAGCAGACATTGGCAGTGTGTGCCTTACATG TCCCCCGTTAGGTTTTCTTGAGTACGTGGCGAATCTCATGTGGTTGTGAT CGAGAGTAGAGCTCGATTGTCATCCTCCTGATCTGACAAGTGTGGTTGTC GCTGCTGCACCTTGTACAACTCCTTTAGCGGTGTTGATTGTATTTTTGTG AATGACACTCATGTGTCCTCTTTCTTCTTTTCCGTGCGTATCAAAACCTA TGCATTGAACTCGTGGTTGGACAGGAAGCAGAGAAAAAAATTCGTCTGAA ACACCTCCCTCGGGTGTTGACTTTGCACCTGAAACGTTTCAAGTACGTGG AGTCATTGGATAACTTCTCGAAGCTTTCACACCGAGTGGTTTTCCCGCTC GAACTAAGGGCACCCAACATGACGGAGGGGCCGGGCGAGACAGACGCAGA TGGACGCCTGTACAGGCAAGTGCCTATACCAAGAGGCTAAGACAATTACC TTCTGCGTATTCATGTATTTCTTGCTGTGCCAGTGGATTGTGATAATTCA CGGCAAGTAACGGATGGCGCATCTGCTTCGAGGCAGGTACAACCGTGATT TTCTCCTCTCGTGGACAACACAGTGTTGAGTAATTGTATTGACGACTTAC TTTCACAGAGAACACCCTTAGGAGCGGAATGATCGTGCCTAAATCTACGG GATGCAACACCGACACCGGTGCAGGACGCTTGGAAGTTGATTTGTTATGA TCTGACTCGGAGTTGGTTCGTCCCAGCGCTTTTAGGTGTTCCTCGTCCTT CATTTTGCCTCCTGGTGCATTGCTCACGTAAACTTGTGCTCGCGTTCCTC GTCCCACTTCCCCCCAAAACTGCTCAGGTTGTTCGCCGTTGTCGTTCACA TTGGACGCGGTCTAAACCACGGTCACTACGTGGCAGTCGTCAAGTCTGGC GGTCGTTGGCTTCTGTTCGATGATGACGTCGTGGAGCCTGTGGATGAAGA GGTATTCTACAACAAAACACGTTTCAGGCATGAAGGCCAATGGCACTGTG TTGTCGGCTACGTCAGTGGTTGACCCAGAAAGCACCAACTATAGCAGTCA ACATGTCTACCGGTTTCTCTTTTGTGACCCAAAGGCATGCGCCTCATGCT GTACGCCATTTCATGTGCTTGATCCTATTTAAAGGAGCTATGTTCGCCGT CTAAATTGTGCTCGCCTACCAAGTAGGCACTTGCTCGCCGTCGTTGCTGT AGTATCCTCTACGCATTAGACGTGAATCCTCTTCACTCCGTGCATTATAA GGACCTGTGCTGTATTTGATCTGACGGGCCCCAAGGCGAACGAGCCATGG CGGAGCTGGACCTCTTGGTGCCTGTATGAAGCGCTCTCAAGCGAGCAATA TGGACCCTAACTTATCTCCGATACGCTCCATCCAAATCCCCCCTCCGCCT CCCTTCCATGACGCCCGCCGCGGACATGTCACTCTTTGTCAAACAGGTAC TCAGGCAATGTTTTGGGCTATCTCGGCCAGCGGTTGCTGCAACAAACACG GGATATCTGTTGCTTTACGACTGTGGGGAATAGATGGGTCCAAGCGTTGC TTGTTCACAGACACCGTTGAACCGCCTGTTTTGTTTATAGTGTTGATTAT TCCGAGTTAGGGCGACAACAAATTGTCAGAGCGAACACGAAGGCAAGATG ACATGGGTGCGTGATGCCTGTTAAGGCGGGCCCTCTTTTGTTGTCCCTTT CTGCGATATCATGAGAAAGTGGCGAATTTGTCGCGCGTCGATCGTTCCCA CGATATCATTTGGTACCCGGGTACTTTGTATATATGTGAGATATTCCTGT GCGAAAGGTTATGCTCCTGCCAGCGGCATTTGATATGGAGATGTTTGAGC TTGATTTGGTTTGTACGTGTTTTACGGTGGTGGTGAAAATTTGTCAAGTC AGTTAGGGCCGTTACTAACAAGCGCGTATTTCTGTACGTTTCATTTCGTT TTTCTCTGTTTTTCTCTTTTCCTGGCTACATGCTGAAATTATACCAGGAA AATCTCGAAAATATGAGCTAGGGTTTGGGAAACACTAGCCGAATATCGCA CTTACTAATTTACGAAATTTCGAAAATTCGATACAAGAAAAATATGGGAG ACAGGAGAAACAAAAATGGAACAGACAAGAAACACTCGTGTTAGTAACGC TCCTAAACCTTTGACAACTGGGGGTCTGTATTGCGATATATTTCGACGCG CGAAATCTCACAGTCATGTGTTGCCATAGGATTTGTGAGGGGTGCGTTTT GGAAGCGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6087:7221..12480-

>mRNA_H-paniculata_contig6087.13779.1 ID=mRNA_H-paniculata_contig6087.13779.1|Name=mRNA_H-paniculata_contig6087.13779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3132bp|location=Sequence derived from alignment at H-paniculata_contig6087:7221..12480- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACACCAGGACCCTGCTTGTACCTCTTAGTGGCTATGGGTATCGG
GTCCTCGCACCAGACAAAGCTCGAGCGTGAGCTTGGAGGCATAGGAGACG
GGAATGGGGAAGAGAGATTCTTCGGATTAGAGAACTTCGGCAATACGTGC
TACTGCAACTCAGTTCTGCAGATGAAAACACCAGGACCCTGCTTGTACCT
CTTAGTGGCTATGGGTATCGGGTCCTCGCACCAGACAAAGCTCGAGCGTG
AGCTTGGAGGCATAGGAGACGGGAATGGGGAAGAGAGATTCTTCGGATTA
GAGAACTTCGGCAATACGTGCTACTGCAACTCAGTTCTGCAGGCACTGTA
CTTCTGCGAACCGCTTAGACATCACCTCGCGGAACTGCGAGAAGAGGATG
CCCACGCAATTGGCGGGGGTGGCAATGGGGGTGCAAGTGGTAGCAGCGGT
GGTGCGGGATCAGCAGGAGGAACCAAGGCGTCTGCCTTAAATAACAGCGG
CAACAGCGTGATTATGCAGCTTGCCGATCTCTTTGCGCTCATCTCTAGGC
AAAAGCGACGCTCGGGCTGCTTGGCACCGACTGATTTCTTGCGAACGTTG
CGGGAAAGGAATGAGTTTTTCCGAGGAAACATGCAGCAGGCACTGTACTT
CTGCGAACCGCTTAGACATCACCTCGCGGAACTGCGAGAAGAGGATGCCC
ACGCAATTGGCGGGGGTGGCAATGGGGGTGCAAGTGGTAGCAGCGGTGGT
GCGGGATCAGCAGGAGGAACCAAGGCGTCTGCCTTAAATAACAGCGGCAA
CAGCGTGATTATGCAGCTTGCCGATCTCTTTGCGCTCATCTCTAGGCAAA
AGCGACGCTCGGGCTGCTTGGCACCGACTGATTTCTTGCGAACGTTGCGG
GAAAGGAATGAGTTTTTCCGAGGAAACATGCAGCAGGATGCGCACGAGTT
CTTCAATTTTGTGTTGAACGAGATGGCCGACAGCCTGGTGGCAAGAAACA
AGCGGATACGACAGCAGCAGCAAGAGGCAGCCGCACTCGATCAGAAGCAC
CGCTTCAACCAATCCCAAAGTTCAAATCACCAGCAATCACAACAGCCATC
ATCAACACACCAGCACCAGCACCAGCAACAACAACACGCTCCTGACCCCC
GTCGCTCAAGCTGGACTAAATTGGGAATAAAAACTGGGTTTGGGAATGGA
TCAAAGAACGGACCACCACCACACCCGGGAACCGAAACAACGACATCGTC
GGTGGCGACTGACCAAGGCACAGAGCAGCGCACAGTCGGGCGGGAGGGGG
GGGCTTCTACAGGAGGGGGTCAGGTAGCACCCGAAAGTGGCGAGGGTCTG
GGTTCCGCTAGGCACACACAAAAAGGTGGCGACGAAAACTCGGCATCGTC
ATCGACGTCGCCTTCTGACACCTGGGTCCATCGAATATTCCAGGGCGTGC
TAACGAACCAGACTAAATGCCTTTGCTGCGAGACGGATGCGCACGAGTTC
TTCAATTTTGTGTTGAACGAGATGGCCGACAGCCTGGTGGCAAGAAACAA
GCGGATACGACAGCAGCAGCAAGAGGCAGCCGCACTCGATCAGAAGCACC
GCTTCAACCAATCCCAAAGTTCAAATCACCAGCAATCACAACAGCCATCA
TCAACACACCAGCACCAGCACCAGCAACAACAACACGCTCCTGACCCCCG
TCGCTCAAGCTGGACTAAATTGGGAATAAAAACTGGGTTTGGGAATGGAT
CAAAGAACGGACCACCACCACACCCGGGAACCGAAACAACGACATCGTCG
GTGGCGACTGACCAAGGCACAGAGCAGCGCACAGTCGGGCGGGAGGGGGG
GGCTTCTACAGGAGGGGGTCAGGTAGCACCCGAAAGTGGCGAGGGTCTGG
GTTCCGCTAGGCACACACAAAAAGGTGGCGACGAAAACTCGGCATCGTCA
TCGACGTCGCCTTCTGACACCTGGGTCCATCGAATATTCCAGGGCGTGCT
AACGAACCAGACTAAATGCCTTTGCTGCGAGACGGTCAGCAACCGAGACG
AGCCGTTCATGGACCTCTCTCTCGACGTGGAGCAAAACTCGTCCGTGACG
GCGTGTCTTCGCAGTTTCAGCAGCACTGAGACTTTAACAAAGAAGAACAA
GTTTTTCTGTGAAAGCTGCAATGCGTTACAGGTCAGCAACCGAGACGAGC
CGTTCATGGACCTCTCTCTCGACGTGGAGCAAAACTCGTCCGTGACGGCG
TGTCTTCGCAGTTTCAGCAGCACTGAGACTTTAACAAAGAAGAACAAGTT
TTTCTGTGAAAGCTGCAATGCGTTACAGGAAGCAGAGAAAAAAATTCGTC
TGAAACACCTCCCTCGGGTGTTGACTTTGCACCTGAAACGTTTCAAGTAC
GTGGAGTCATTGGATAACTTCTCGAAGCTTTCACACCGAGTGGTTTTCCC
GCTCGAACTAAGGGCACCCAACATGACGGAGGGGCCGGGCGAGACAGACG
CAGATGGACGCCTGTACAGGAAGCAGAGAAAAAAATTCGTCTGAAACACC
TCCCTCGGGTGTTGACTTTGCACCTGAAACGTTTCAAGTACGTGGAGTCA
TTGGATAACTTCTCGAAGCTTTCACACCGAGTGGTTTTCCCGCTCGAACT
AAGGGCACCCAACATGACGGAGGGGCCGGGCGAGACAGACGCAGATGGAC
GCCTGTACAGGTTGTTCGCCGTTGTCGTTCACATTGGACGCGGTCTAAAC
CACGGTCACTACGTGGCAGTCGTCAAGTCTGGCGGTCGTTGGCTTCTGTT
CGATGATGACGTCGTGGAGCCTGTGGATGAAGAGGTTGTTCGCCGTTGTC
GTTCACATTGGACGCGGTCTAAACCACGGTCACTACGTGGCAGTCGTCAA
GTCTGGCGGTCGTTGGCTTCTGTTCGATGATGACGTCGTGGAGCCTGTGG
ATGAAGAGGTACTCAGGCAATGTTTTGGGCTATCTCGGCCAGCGGTTGCT
GCAACAAACACGGGATATCTGTTGCTTTACGACTGTGGGGAATAGGTACT
CAGGCAATGTTTTGGGCTATCTCGGCCAGCGGTTGCTGCAACAAACACGG
GATATCTGTTGCTTTACGACTGTGGGGAATAG
back to top