mRNA_H-paniculata_contig60866.13777.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.680e-10 Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + +G +V ++ I + + +K+GK
Sbjct: 263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGK 370
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.000e-9 Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP + +F+Y S +++VT+A+G+ + + G G + + D I + V ++PGLD L S+ + +G +V + I + + +KIGK
Sbjct: 245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.430e-9 Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + +G V + I + +K+GK
Sbjct: 160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGK 267
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 8.180e-9 Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S++ + +G +V +++ I + + +K+GK
Sbjct: 266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTIWNKSKAIASGKKVGK 373
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 8.750e-9 Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP +F+Y+ SN+ VT+A+G+ + + G G + + D I V ++PGLD L S+ + +G +V +++ I + + +KIGK
Sbjct: 242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTIWNKSKAIASGKKIGK 349
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 61.2 bits (147), Expect = 1.650e-8 Identity = 30/87 (34.48%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTV 264
W+ DSGA+ H TP ++ DY+T + V A G+ I G G + + + +G +L +V HVPG+D+NL S +++ +GF +
Sbjct: 306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 60.8 bits (146), Expect = 2.250e-8 Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGS 309
W+ DSGA+AHMT +E ++T+A+G+ I G G ++ D E+ + +S V +VPGL TNL S++ + + V +G I P G+
Sbjct: 275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE) HSP 1 Score: 58.2 bits (139), Expect = 2.270e-8 Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 1 EFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
+ W+ADSGA+ HMTP E YE+ S+ V + N ET+ G G + V G+ LS V VP + NLFS+ V++G+ + + G ++ D R +GK
Sbjct: 10 DMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKGYDFKVDKNGCYLS----KDGRVRLVGK 118
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 3.050e-8 Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFT 261
W+ DSGAT+HMTP E +FD E T S++ VT+A+G+ L + G G + + + + I + V ++PGLD L S+ + +G T
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM) HSP 1 Score: 59.7 bits (143), Expect = 5.720e-8 Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 7 WVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGFTVCLKEEGAAIALPNGSDLLCRKIGK 336
W+ DSGATAHMTP +F+Y+ S++ VT+A+G+ + + G G + + D I V +PGLD L S+ + +G V +++ I + + L +K+GK
Sbjct: 267 WLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRLTGIDGTRIKMID---VLFIPGLDRQLLSVSRLAERGMIVEFQKKSCTIWNKSKAIALGKKVGK 374 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60866.13777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig60866.13777.1 >prot_H-paniculata_contig60866.13777.1 ID=prot_H-paniculata_contig60866.13777.1|Name=mRNA_H-paniculata_contig60866.13777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp EFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWback to top mRNA from alignment at H-paniculata_contig60866:110..460- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig60866.13777.1 ID=mRNA_H-paniculata_contig60866.13777.1|Name=mRNA_H-paniculata_contig60866.13777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig60866:110..460- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig60866:110..460- >mRNA_H-paniculata_contig60866.13777.1 ID=mRNA_H-paniculata_contig60866.13777.1|Name=mRNA_H-paniculata_contig60866.13777.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig60866:110..460- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |