mRNA_H-paniculata_contig6085.13775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6085.13775.1
Unique NamemRNA_H-paniculata_contig6085.13775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6085.13775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6085contigH-paniculata_contig6085:1753..4067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size2315
Cds size2118
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.228993-UTR-H-paniculata_contig6085:1752..19491622930680.228993-UTR-H-paniculata_contig6085:1752..1949Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6085 1753..1949 +
1691481403.3002243-UTR-H-paniculata_contig6085:1752..19491691481403.3002243-UTR-H-paniculata_contig6085:1752..1949Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6085 1753..1949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930680.2510185-CDS-H-paniculata_contig6085:1949..40671622930680.2510185-CDS-H-paniculata_contig6085:1949..4067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6085 1950..4067 +
1691481403.3104222-CDS-H-paniculata_contig6085:1949..40671691481403.3104222-CDS-H-paniculata_contig6085:1949..4067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6085 1950..4067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6085.13775.1prot_H-paniculata_contig6085.13775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6085 1950..4067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6085.13775.1

>prot_H-paniculata_contig6085.13775.1 ID=prot_H-paniculata_contig6085.13775.1|Name=mRNA_H-paniculata_contig6085.13775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=706bp
MADQSSRLCTNACTPPAPGTTTTIPASSRRYRRRRPRRLGTVASAAATIA
ATSLAVFTLKSSGTGGGGSRRPTNSSPTTVDAFCVPAPVHPRGALHYPPS
SGARTAAGARSRIVTEGASRRRSGGGSGRGSDSSSGIQAAGPRSNSEEIK
SLLERKRAVVGSGSRAGVDGGLTLAMICPEESVEGVHGEAAAAVAATTTK
TNGAAVPDLSKLKLPELKALYKGQGGKPGAMRKAELLEKLKAYSLVAGTQ
QQGGADREDSVLRSTDEETAAARIALLPEREEQGREEDGRTRRVGYVEPV
NGCAPTTSPRTSSLTPTEAVGSEEDLIPSTTHFTSPSAVMAASTALASAG
MRKQLLSPDDALDRVVDQLLREQDAIVTPASSTGDRDRCDNSGAGEKSSS
SSRLLLPDAAEQSGVKDAPNVRPAAAVAAAARVRGFSAAAAAAAAAARVA
EDGQSSSVTTAKRHAEAVRSRAANAWRQSADAHPSHILPTEVFIGHGGHG
RTGSIEAVGVAGTAEEGGEEGSMMLRVGSGQQLGGGGETSSRRSHRSSSP
ELANSELEGQGAVVMEVTAAAAATSLQGPNGVQRRYLSSPPDRDLYLSSI
PVSDLDSAGKTSEGDGEDSNDRLSIKRATATAKGATAISGEHTGEKNGER
APSSRHENTPTATAKEIPEAGEPGDGDDRGAAEVKAIRRATGGRGNGFDV
RPSRAG
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mRNA from alignment at H-paniculata_contig6085:1753..4067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6085.13775.1 ID=mRNA_H-paniculata_contig6085.13775.1|Name=mRNA_H-paniculata_contig6085.13775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2315bp|location=Sequence derived from alignment at H-paniculata_contig6085:1753..4067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGCACTACCGGCCACCTACAACACATAAAACGCACAGAGCTAAACGG
GCAGATACGTACGCGGTCATCATCCTTTCGTGCAGGCAACTCTATTAGCT
CTCCTCCTGGAGACCACCACCGAACAACACCCAAGAAGCACGAAAGCAAG
TACACACCAATAGTGGGCAGGCCGAAAAGGAACAGGGAAAAAAAGGCATG
GCGGATCAGTCGTCGCGGCTTTGCACTAATGCTTGCACACCGCCCGCTCC
CGGCACCACCACCACTATTCCAGCTTCCAGCAGGCGATATCGTCGGCGAC
GGCCAAGACGATTAGGAACAGTCGCGTCCGCGGCGGCGACCATCGCCGCG
ACCTCCTTAGCCGTCTTCACGCTTAAATCCAGTGGCACCGGCGGCGGTGG
CAGTAGGCGTCCTACTAATAGTTCTCCCACAACAGTAGACGCGTTTTGTG
TCCCCGCCCCTGTCCATCCTCGTGGCGCCCTTCACTACCCTCCCTCTTCT
GGAGCGAGGACCGCCGCCGGTGCACGGAGTCGAATAGTAACCGAAGGAGC
GAGTCGCCGACGAAGCGGCGGCGGGAGCGGGAGAGGGAGCGATAGCAGCA
GTGGGATACAGGCTGCCGGCCCCCGGAGCAATAGTGAAGAGATCAAATCC
CTTCTGGAGCGGAAACGCGCGGTCGTTGGCAGCGGTAGCAGGGCGGGTGT
TGACGGTGGGCTGACACTGGCGATGATATGCCCCGAGGAGAGCGTGGAGG
GGGTACATGGTGAGGCGGCGGCAGCGGTGGCGGCGACAACGACGAAGACT
AATGGTGCTGCCGTGCCGGACCTGAGCAAGTTGAAGTTGCCCGAGCTGAA
GGCATTGTACAAAGGGCAGGGGGGCAAACCCGGGGCGATGCGGAAAGCGG
AACTACTGGAGAAGCTGAAGGCATATTCTCTGGTTGCGGGGACACAGCAA
CAGGGCGGGGCCGATAGAGAAGATTCCGTGTTGCGATCGACAGATGAGGA
GACAGCTGCGGCAAGGATTGCGCTCTTGCCTGAACGTGAGGAACAGGGCA
GAGAAGAAGATGGCAGAACCCGAAGAGTGGGCTATGTGGAGCCGGTGAAT
GGTTGCGCGCCTACTACCAGTCCCAGGACGTCGTCACTCACACCAACGGA
AGCCGTAGGTTCAGAAGAAGACTTGATACCGAGCACTACCCATTTTACCA
GCCCTTCTGCAGTTATGGCGGCTAGCACCGCTCTCGCGTCTGCAGGAATG
CGGAAGCAATTATTATCGCCCGATGACGCCCTGGACCGCGTGGTGGATCA
GCTATTACGGGAGCAGGACGCAATCGTAACACCGGCATCTTCCACTGGGG
ACCGGGACAGGTGCGACAACTCGGGGGCGGGGGAGAAATCGTCATCATCA
TCGCGATTGCTGCTGCCGGACGCCGCTGAACAGAGTGGCGTAAAGGACGC
TCCAAACGTCAGACCGGCGGCGGCCGTGGCGGCCGCGGCGCGCGTTCGTG
GTTTTTCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCCAGGGTAGCGGAG
GACGGGCAATCGTCATCAGTGACTACCGCCAAGCGGCACGCTGAAGCCGT
GCGCTCGCGGGCAGCTAACGCTTGGCGACAGTCCGCCGACGCCCATCCAT
CGCACATTTTGCCGACAGAGGTTTTCATCGGACACGGTGGCCATGGTCGG
ACTGGTTCGATCGAAGCAGTGGGGGTGGCAGGGACGGCGGAAGAAGGAGG
AGAAGAAGGGTCGATGATGCTGCGTGTGGGCAGCGGGCAGCAATTAGGGG
GAGGGGGTGAGACATCTTCTCGACGTTCCCATCGTTCCTCCTCCCCCGAG
CTCGCGAATAGCGAGTTGGAAGGGCAAGGTGCAGTGGTCATGGAAGTAAC
GGCGGCGGCGGCGGCGACTTCATTGCAGGGCCCAAACGGAGTACAACGAC
GATATTTATCTTCCCCCCCGGATCGGGACTTGTATTTGTCTTCCATCCCC
GTCAGTGATCTCGATTCCGCGGGTAAGACTAGCGAAGGCGATGGCGAAGA
CTCGAACGATCGCTTGAGCATTAAACGTGCAACCGCGACAGCAAAAGGCG
CTACCGCTATATCAGGTGAACACACTGGAGAGAAGAACGGTGAGAGGGCC
CCCAGCAGCCGTCACGAGAACACGCCGACGGCGACCGCGAAAGAGATTCC
GGAAGCTGGCGAACCCGGCGACGGTGATGACAGGGGCGCGGCAGAGGTGA
AGGCGATAAGGCGGGCAACCGGGGGCAGAGGGAACGGTTTCGACGTCAGG
CCCTCTCGGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6085:1753..4067+

>mRNA_H-paniculata_contig6085.13775.1 ID=mRNA_H-paniculata_contig6085.13775.1|Name=mRNA_H-paniculata_contig6085.13775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4236bp|location=Sequence derived from alignment at H-paniculata_contig6085:1753..4067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGATCAGTCGTCGCGGCTTTGCACTAATGCTTGCACACCGCCCGC
TCCCGGCACCACCACCACTATTCCAGCTTCCAGCAGGCGATATCGTCGGC
GACGGCCAAGACGATTAGGAACAGTCGCGTCCGCGGCGGCGACCATCGCC
GCGACCTCCTTAGCCGTCTTCACGCTTAAATCCAGTGGCACCGGCGGCGG
TGGCAGTAGGCGTCCTACTAATAGTTCTCCCACAACAGTAGACGCGTTTT
GTGTCCCCGCCCCTGTCCATCCTCGTGGCGCCCTTCACTACCCTCCCTCT
TCTGGAGCGAGGACCGCCGCCGGTGCACGGAGTCGAATAGTAACCGAAGG
AGCGAGTCGCCGACGAAGCGGCGGCGGGAGCGGGAGAGGGAGCGATAGCA
GCAGTGGGATACAGGCTGCCGGCCCCCGGAGCAATAGTGAAGAGATCAAA
TCCCTTCTGGAGCGGAAACGCGCGGTCGTTGGCAGCGGTAGCAGGGCGGG
TGTTGACGGTGGGCTGACACTGGCGATGATATGCCCCGAGGAGAGCGTGG
AGGGGGTACATGGTGAGGCGGCGGCAGCGGTGGCGGCGACAACGACGAAG
ACTAATGGTGCTGCCGTGCCGGACCTGAGCAAGTTGAAGTTGCCCGAGCT
GAAGGCATTGTACAAAGGGCAGGGGGGCAAACCCGGGGCGATGCGGAAAG
CGGAACTACTGGAGAAGCTGAAGGCATATTCTCTGGTTGCGGGGACACAG
CAACAGGGCGGGGCCGATAGAGAAGATTCCGTGTTGCGATCGACAGATGA
GGAGACAGCTGCGGCAAGGATTGCGCTCTTGCCTGAACGTGAGGAACAGG
GCAGAGAAGAAGATGGCAGAACCCGAAGAGTGGGCTATGTGGAGCCGGTG
AATGGTTGCGCGCCTACTACCAGTCCCAGGACGTCGTCACTCACACCAAC
GGAAGCCGTAGGTTCAGAAGAAGACTTGATACCGAGCACTACCCATTTTA
CCAGCCCTTCTGCAGTTATGGCGGCTAGCACCGCTCTCGCGTCTGCAGGA
ATGCGGAAGCAATTATTATCGCCCGATGACGCCCTGGACCGCGTGGTGGA
TCAGCTATTACGGGAGCAGGACGCAATCGTAACACCGGCATCTTCCACTG
GGGACCGGGACAGGTGCGACAACTCGGGGGCGGGGGAGAAATCGTCATCA
TCATCGCGATTGCTGCTGCCGGACGCCGCTGAACAGAGTGGCGTAAAGGA
CGCTCCAAACGTCAGACCGGCGGCGGCCGTGGCGGCCGCGGCGCGCGTTC
GTGGTTTTTCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCCAGGGTAGCG
GAGGACGGGCAATCGTCATCAGTGACTACCGCCAAGCGGCACGCTGAAGC
CGTGCGCTCGCGGGCAGCTAACGCTTGGCGACAGTCCGCCGACGCCCATC
CATCGCACATTTTGCCGACAGAGGTTTTCATCGGACACGGTGGCCATGGT
CGGACTGGTTCGATCGAAGCAGTGGGGGTGGCAGGGACGGCGGAAGAAGG
AGGAGAAGAAGGGTCGATGATGCTGCGTGTGGGCAGCGGGCAGCAATTAG
GGGGAGGGGGTGAGACATCTTCTCGACGTTCCCATCGTTCCTCCTCCCCC
GAGCTCGCGAATAGCGAGTTGGAAGGGCAAGGTGCAGTGGTCATGGAAGT
AACGGCGGCGGCGGCGGCGACTTCATTGCAGGGCCCAAACGGAGTACAAC
GACGATATTTATCTTCCCCCCCGGATCGGGACTTGTATTTGTCTTCCATC
CCCGTCAGTGATCTCGATTCCGCGGGTAAGACTAGCGAAGGCGATGGCGA
AGACTCGAACGATCGCTTGAGCATTAAACGTGCAACCGCGACAGCAAAAG
GCGCTACCGCTATATCAGGTGAACACACTGGAGAGAAGAACGGTGAGAGG
GCCCCCAGCAGCCGTCACGAGAACACGCCGACGGCGACCGCGAAAGAGAT
TCCGGAAGCTGGCGAACCCGGCGACGGTGATGACAGGGGCGCGGCAGAGG
TGAAGGCGATAAGGCGGGCAACCGGGGGCAGAGGGAACGGTTTCGACGTC
AGGCCCTCTCGGGCGGGAATGGCGGATCAGTCGTCGCGGCTTTGCACTAA
TGCTTGCACACCGCCCGCTCCCGGCACCACCACCACTATTCCAGCTTCCA
GCAGGCGATATCGTCGGCGACGGCCAAGACGATTAGGAACAGTCGCGTCC
GCGGCGGCGACCATCGCCGCGACCTCCTTAGCCGTCTTCACGCTTAAATC
CAGTGGCACCGGCGGCGGTGGCAGTAGGCGTCCTACTAATAGTTCTCCCA
CAACAGTAGACGCGTTTTGTGTCCCCGCCCCTGTCCATCCTCGTGGCGCC
CTTCACTACCCTCCCTCTTCTGGAGCGAGGACCGCCGCCGGTGCACGGAG
TCGAATAGTAACCGAAGGAGCGAGTCGCCGACGAAGCGGCGGCGGGAGCG
GGAGAGGGAGCGATAGCAGCAGTGGGATACAGGCTGCCGGCCCCCGGAGC
AATAGTGAAGAGATCAAATCCCTTCTGGAGCGGAAACGCGCGGTCGTTGG
CAGCGGTAGCAGGGCGGGTGTTGACGGTGGGCTGACACTGGCGATGATAT
GCCCCGAGGAGAGCGTGGAGGGGGTACATGGTGAGGCGGCGGCAGCGGTG
GCGGCGACAACGACGAAGACTAATGGTGCTGCCGTGCCGGACCTGAGCAA
GTTGAAGTTGCCCGAGCTGAAGGCATTGTACAAAGGGCAGGGGGGCAAAC
CCGGGGCGATGCGGAAAGCGGAACTACTGGAGAAGCTGAAGGCATATTCT
CTGGTTGCGGGGACACAGCAACAGGGCGGGGCCGATAGAGAAGATTCCGT
GTTGCGATCGACAGATGAGGAGACAGCTGCGGCAAGGATTGCGCTCTTGC
CTGAACGTGAGGAACAGGGCAGAGAAGAAGATGGCAGAACCCGAAGAGTG
GGCTATGTGGAGCCGGTGAATGGTTGCGCGCCTACTACCAGTCCCAGGAC
GTCGTCACTCACACCAACGGAAGCCGTAGGTTCAGAAGAAGACTTGATAC
CGAGCACTACCCATTTTACCAGCCCTTCTGCAGTTATGGCGGCTAGCACC
GCTCTCGCGTCTGCAGGAATGCGGAAGCAATTATTATCGCCCGATGACGC
CCTGGACCGCGTGGTGGATCAGCTATTACGGGAGCAGGACGCAATCGTAA
CACCGGCATCTTCCACTGGGGACCGGGACAGGTGCGACAACTCGGGGGCG
GGGGAGAAATCGTCATCATCATCGCGATTGCTGCTGCCGGACGCCGCTGA
ACAGAGTGGCGTAAAGGACGCTCCAAACGTCAGACCGGCGGCGGCCGTGG
CGGCCGCGGCGCGCGTTCGTGGTTTTTCGGCGGCGGCAGCGGCAGCGGCG
GCGGCGGCCAGGGTAGCGGAGGACGGGCAATCGTCATCAGTGACTACCGC
CAAGCGGCACGCTGAAGCCGTGCGCTCGCGGGCAGCTAACGCTTGGCGAC
AGTCCGCCGACGCCCATCCATCGCACATTTTGCCGACAGAGGTTTTCATC
GGACACGGTGGCCATGGTCGGACTGGTTCGATCGAAGCAGTGGGGGTGGC
AGGGACGGCGGAAGAAGGAGGAGAAGAAGGGTCGATGATGCTGCGTGTGG
GCAGCGGGCAGCAATTAGGGGGAGGGGGTGAGACATCTTCTCGACGTTCC
CATCGTTCCTCCTCCCCCGAGCTCGCGAATAGCGAGTTGGAAGGGCAAGG
TGCAGTGGTCATGGAAGTAACGGCGGCGGCGGCGGCGACTTCATTGCAGG
GCCCAAACGGAGTACAACGACGATATTTATCTTCCCCCCCGGATCGGGAC
TTGTATTTGTCTTCCATCCCCGTCAGTGATCTCGATTCCGCGGGTAAGAC
TAGCGAAGGCGATGGCGAAGACTCGAACGATCGCTTGAGCATTAAACGTG
CAACCGCGACAGCAAAAGGCGCTACCGCTATATCAGGTGAACACACTGGA
GAGAAGAACGGTGAGAGGGCCCCCAGCAGCCGTCACGAGAACACGCCGAC
GGCGACCGCGAAAGAGATTCCGGAAGCTGGCGAACCCGGCGACGGTGATG
ACAGGGGCGCGGCAGAGGTGAAGGCGATAAGGCGGGCAACCGGGGGCAGA
GGGAACGGTTTCGACGTCAGGCCCTCTCGGGCGGGA
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