prot_H-paniculata_contig60835.13774.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60835.13774.1
Unique Nameprot_H-paniculata_contig60835.13774.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length153
Homology
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438EAR5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EAR5_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-9
Identity = 40/149 (26.85%), Postives = 77/149 (51.68%), Query Frame = 0
Query:    1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 148
            I+C+NC K GH Q+EC  K  E K    +  G      + +   +SK  + W +DSGC+ +H+  +++LF    +   + +       + V+G+G++   +    G V++I  +VFY+P   D++LSV ++  +G+       + + Y+
Sbjct:  301 IECYNCHKIGHFQYECPNKETETKTQYAEASGEILLMAHADGKEASKDEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVKGKGNIRTFV---NGIVQLI-TEVFYVPGLQDNLLSVGQLQEKGLAILIQHGKCKIYH 443          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5J5C6G7_9ASTE (CCHC-type domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5C6G7_9ASTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-9
Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 0
Query:    1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHA---GYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 148
            ++C+NC K GH QWEC  K +E         T E      YV+ + ++K  + W +D GC+ +H+  +++ F  F    R  +       + V G+G+V   +    G V+II  +VFY+PE  +++LS+ ++  + +   F + + + ++
Sbjct:   94 VECFNCHKLGHFQWECPSKEKEANYAE----TQEEMLLMAYVDMNKANKEDM-WFLDLGCS-NHMCGKKEYFSDFDGSFRDSVKLGNNSSMVVTGKGNVRLQV---NGIVQII-TEVFYMPELKNNLLSIGQLQEKRLTILFQNGKCKVFH 234          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438CMV7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CMV7_VITVI)

HSP 1 Score: 60.5 bits (145), Expect = 8.750e-8
Identity = 38/149 (25.50%), Postives = 76/149 (51.01%), Query Frame = 0
Query:    1 IQCWNCGKHGHGQWECREKRRE-KPLGGKRHGTGEHAGYVEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYY 148
            I+C++C K GH Q+EC  K  E K    +  G      + +   +SK  + W +DSGC+ +H+  +++LF    +   + +       + V G+G++   +    G V++I  +VFY+P   +++LSV ++  +G+       + + Y+
Sbjct:  247 IECYDCHKLGHFQYECPNKETETKAQYAEASGEILLMAHADGKEASKEEL-WFLDSGCS-NHMCGKKELFSRLDESFSTSVKLGDNSSMAVTGKGNIRMFV---NGIVQLI-TEVFYVPGLQNNLLSVGQLQEKGLAILIQHGKCKIYH 389          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A2P6U5G8_CHLSO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5G8_CHLSO)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5
Identity = 41/156 (26.28%), Postives = 69/156 (44.23%), Query Frame = 0
Query:    3 CWNCGKHGHGQWECREKRREKPLGGK-----RHGTGEHAGYVEEHNS---SKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNG 150
            C+ CGK GH   ECR+K+ +    G       +  G  A   ++  +   S + + W++D+G +  HLT    +    R +      T G G     G+    G ++ A         +V YIPEA++S++SV      G++  F ++R     NG
Sbjct:  247 CFYCGKPGHFADECRQKQLDMARQGNSTQPLHNQFGTIALMAQDQAAAPKSATSMRWVLDTGASR-HLTGDASILSNMRPMDEDLTITFGNGGT---GKATATGDVYLATTDAVFQLTEVLYIPEATESLISVRHATKHGLDFTFSADRCDISRNG 398          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 3.220e-5
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 0
Query:   39 VEEHNSSKSRIHWIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYF 139
            V  H +S     W+IDSGC  +H+TP+   F+   Q  +S +       ++V+G+G V     T    ++ I  DV ++PE S S+LSV +M+ +    +F
Sbjct:  279 VTSHATSSCTETWLIDSGCT-NHMTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVVSVETPTC---IKYIL-DVLFVPEISQSLLSVGQMLEKNYSLHF 374          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A5N4AX79_PHOPY (CCHC-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AX79_PHOPY)

HSP 1 Score: 52.0 bits (123), Expect = 7.130e-5
Identity = 43/158 (27.22%), Postives = 71/158 (44.94%), Query Frame = 0
Query:    1 IQCWNCGKHGHGQWECREKRREKPLGGKRHGT-GEHAGYVEEHNSSKSRIH---WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVR-IIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNGVTI 153
            ++C+ C + GH +  C + +R K    K     G  A   E    + + +H   WI+DSG    H+T  R  F    +  +S I     G + V+G+G  + +   ++  VR  I  +V Y P    ++LSV R+V  G+   F  + R    +G  I
Sbjct:  221 MKCFFCKRSGHMKSSCEKYQRWKDKKKKEDTIKGNIANDREVMFITTNSMHHSGWIVDSGATR-HITNDRKFFSSLDESYKSVIEVGNGGTVYVKGKGSGKLMFMDSKDNVRRAIANEVLYAPNMVGNVLSVRRLVENGLTIEFNKKFREIKADGQQI 377          
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Match: A0A1S3E5A3_CICAR (uncharacterized protein LOC105851896 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S3E5A3_CICAR)

HSP 1 Score: 51.6 bits (122), Expect = 9.550e-5
Identity = 26/97 (26.80%), Postives = 51/97 (52.58%), Query Frame = 0
Query:   51 WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLIWTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFY 147
            W +D+GC+ +H+T  +D F    + V+  I       +  EG G++  LI   +     I CDVFY+P   + +LS+E+++ +G      + +++ +
Sbjct:  294 WYLDTGCS-NHMTEHKDWFISIDEKVKREIKFVDNNTVTTEGVGNI--LIQRKDDKKSFI-CDVFYVPNMKNKLLSLEQLLDKGYSMSMENGQKKMF 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60835.13774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A438EAR5_VITVI1.730e-926.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A5J5C6G7_9ASTE1.940e-927.15CCHC-type domain-containing protein n=1 Tax=Nyssa ... [more]
A0A438CMV7_VITVI8.750e-825.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6U5G8_CHLSO3.220e-526.28Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438GVH9_VITVI3.220e-531.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N4AX79_PHOPY7.130e-527.22CCHC-type domain-containing protein n=1 Tax=Photin... [more]
A0A1S3E5A3_CICAR9.550e-526.80uncharacterized protein LOC105851896 n=1 Tax=Cicer... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 3..18
score: 9.422
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 1..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60835contigH-paniculata_contig60835:116..658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60835.13774.1mRNA_H-paniculata_contig60835.13774.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60835 116..658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60835.13774.1 ID=prot_H-paniculata_contig60835.13774.1|Name=mRNA_H-paniculata_contig60835.13774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
IQCWNCGKHGHGQWECREKRREKPLGGKRHGTGEHAGYVEEHNSSKSRIH
WIIDSGCNGDHLTPQRDLFQIFRQVVRSPIATAGKGELNVEGQGDVEGLI
WTAEGAVRIIFCDVFYIPEASDSILSVERMVSQGMEAYFGSERRRFYYNG
VTI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf