mRNA_H-paniculata_contig6080.13771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6080.13771.1
Unique NamemRNA_H-paniculata_contig6080.13771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7FSN9_ECTSI (Heat shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN9_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 2.420e-146
Identity = 245/536 (45.71%), Postives = 333/536 (62.13%), Query Frame = 1
Query:    1 YAVAIDLGTARTAFSWKSVLDPT-PRVGVPE---NTDGVLTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQFA--DSTRG-QLFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAILEKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCI-EGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSRGGPPHPVAPTWEALTATVSYGILSTQVAGSDTATTFEPFILRGEGYPPNHTETKSYSVKKDQPFNVVVMSSDNLEITAGSNSL 1584
            + VAIDLGT+ TAFSWKS++DP  P +GVP+   N D  +  KSPT +L+AG+ G  K+F+P    A+G  A+ ++A  D   G QLFKRFKM         +DDL      STS  AE+ L D+ + AL +IK   L  +     V+A+D+ WVLTVPVCCS  A  FMR  A KAGF  G ++DE LVLC EPIAACLALG+ L+W+  +KYLV+DCGGGTVDISAF++I ++P  L+QLG   GG WG+TNVD+ F + LK F+ S++ + G    +SFFASS  ++I Q WE AK+GL  V  DC ++L+ L ++P  +T E ++ GR L N G  E  VGG+ T+D  ++P L+R+FF   C  I  AV  QL RP LQ L AVVMVGGFSGS+HV   Q  V+ C+       ++ +    +PDLA+V+GA HF        +    GG   P AP + A+T+  SYGI+ ++  G      F+PF L+G+GY  NH  TK+Y+++ D PF + V S  +  +  G N L
Sbjct:    4 FVVAIDLGTSCTAFSWKSIVDPAGPSIGVPDMKPNED--IIGKSPTTLLIAGSTGSDKMFRPTGAEAYGREAQHRYANGDIPHGAQLFKRFKM--------IYDDLVDAVTKSTSRKAEMMLMDIFVIALEYIKSVALMGMTLTHAVSAEDVTWVLTVPVCCSEPAKHFMREAATKAGFIKGGNDDEGLVLCMEPIAACLALGNRLQWRMRDKYLVIDCGGGTVDISAFEVISSAPPSLEQLGEASGGPWGSTNVDRLFEAYLKDFVLSVAQEAGERSLESFFASSASYRINQAWERAKIGLRSVDHDCRIDLSELSREPLEVTTEEMDEGRRLKNRGGTEF-VGGHGTFDLVLRPALLRKFFKEQCKNISGAVSEQLERPHLQGLSAVVMVGGFSGSMHV---QEAVRACVARKYPDGSVEVSIPKSPDLAIVEGAAHFVSAPPASGAVGP-GGQQLPAAPRFAAVTSANSYGIVVSETGGGVVPAFFDPFFLKGQGYEMNHMVTKNYTIQSDIPFTLSVSSCASPHVHPGCNRL 524          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: A0A6H5JT12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT12_9PHAE)

HSP 1 Score: 375 bits (962), Expect = 7.300e-120
Identity = 202/442 (45.70%), Postives = 277/442 (62.67%), Query Frame = 1
Query:  286 FDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAILEKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKI---FIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCI-----EGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTS-SRGGPPHPVAPTWEALTATVSYGILSTQVAGSDTATTFEPFILRGEGYPPNHTETKSYSVKKDQPFNVVVMSSDNLEITAGSNSL 1584
            +DDL      STS  AE+ L D+ + AL +IK   L ++     V+A D+ WVLTVPVCCS  A  FMR  A KAGF  G  +DE LVLC EPIAACLALGD L+W+  ++YLV+DCGGGTVDISAF++I ++P  L+QLG   GG WG+TNVD++F + LK    F+ S++ + G    +SFFASS  ++I Q WE AK+GL  +  DC ++L+ L ++P  +TK+ ++ GR L N G  E  VGG+ T++  ++P L+R+FF   C  I  AV  QL RP LQ L AVVMVGGFSGSVHV   Q  V+ C+     +G  Q ++      +PDLA+V+GA HF  ++  LPS +    G   P AP + A+T+  SYGI+ ++  G      F+PF L+G+GY  NHT TK+Y ++ D PF + V S  +  +  G N L
Sbjct:   76 YDDLVDAVTKSTSKRAEMMLMDIFVIALEYIKSVALRRMTLTHPVSADDVTWVLTVPVCCSEPAKHFMREAATKAGFIKGGSDDEDLVLCMEPIAACLALGDRLQWRMGDRYLVIDCGGGTVDISAFEVISSAPPSLEQLGEASGGPWGSTNVDRQFEAYLKASGDFVLSVAQEAGARALESFFASSASYRINQAWERAKIGLRSLDHDCRIDLSELSREPLEVTKDEMDEGRRLKNIGGTEF-VGGHGTFELVLRPALLRKFFNNQCENISGAVSEQLERPHLQGLSAVVMVGGFSGSVHV---QEAVRACVARRYPDGSVQVSI----PKSPDLAIVEGAAHF--VSAPLPSGAVGLDGQQLPAAPRFAAVTSANSYGIVVSETGGGVVPAFFDPFFLKGQGYEMNHTVTKNYVIQNDIPFTLSVSSCASPHVHPGCNRL 507          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7FRC9_ECTSI (Heat shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC9_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 7.370e-67
Identity = 149/403 (36.97%), Postives = 216/403 (53.60%), Query Frame = 1
Query:  382 KAILEKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQ-PFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSRGGPPHPVAPTWEALTATVSYGILSTQVAGSDTATTFEPFILRGEGYPPNHTETKSYSVKKDQPFNVVVMSSDNLEITAGSNSLE 1587
            +A LE L    +V    + WVLTVP CC+  A++FM   A +AG   GED+ E L +C EP+AACLAL D L W  ++ YLVVDCGGGTVDI AF++    P  L Q+G      WG+T VD++F   L  F  S++   G  + +SF     + K+ Q WE AKVGL+    +C ++++ + +    +    A++  R   N G ++  VGG  T +  +KP L+  FF   C RI  AV  +L   +L+ L +VVMVGGF+GS+HV+ +    +  +E     ++++V + +PDLAVVQGA  +       P   +        AP    +T   SYGIL T   G+  A  FE  +L+GE YP  HT+   Y+V  D    +   S    E+  G N L+
Sbjct:   24 QAALENLAR-ARVKPNRVSWVLTVPACCTAPATKFMSDAAIRAGLINGEDDAEHLTICKEPVAACLALEDRLDWSVNDMYLVVDCGGGTVDICAFKLAQLGPPILDQVGDNISESWGSTYVDEQFRVFLMTFADSVAPRAGHFQLESFERDGMY-KVLQNWEEAKVGLSVDKPECRIDMSEMVEALGVSQPAMAMDTARKKTNNGGQDL-VGGSGT-ELVLKPALLTRFFRTQCDRIAGAVSEKLKTEELRGLKSVVMVGGFAGSMHVQAAVR--KSVLEEYPNKSVQVVVATSPDLAVVQGAALYVGPLGPRPKYPTS-------APEMNGITCGSSYGIL-TSGRGTWDAKFFEAVLLKGEAYPNGHTKDFDYTVGSD--CKLAFGSCGASEVKEGRNRLD 410          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: A0A6H5JDD7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDD7_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 6.320e-57
Identity = 160/460 (34.78%), Postives = 224/460 (48.70%), Query Frame = 1
Query:    7 VAIDLGTARTAFSWKSVLDPTPRVGVPENTDGV-----LTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQFADST---RGQLFKRF-KMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAILEKL-GSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCI-EGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSRGGPPHP 1353
            VAID+G   TA SWKS  DP P V    N D       +  KSP ++L    +    V     V++ G+ AE+ +A  +     +LF+RF +  M   S    + +       +   +E+ L  +M + L   + A L+ L G+   V+A  + WVLTVP   S    E +R+ A  AG      + E L  CPEPIAACLA  D L W+  + YLVVDCGG TVDI    + D    +L QL     G WG+  +D  F   L+ FI S +   G+    SF  SS   +I Q WE +KVG  D   +C ++L  LG  P  +T E ++  RD  N G  E  VGGY T    +KP  MR+ F      I +AV  QL  P+LQ + +VVMVGGFS +  V   Q  ++ C+ E   + ++ ++    P LA+ +GA  F       P +     PP P
Sbjct:   29 VAIDIGKFGTACSWKSNWDPVPAV---RNLDTQQPREKVVRKSPNSLL----VHRDNV----SVVSLGDTAEKSYACGSCPVGAKLFRRFGRQRMRVESEPTSESV----VKCSRNRSEMELAKIMFYLLMHARDAALKNLPGAGKPVSAASVNWVLTVPASLSDRQWETVRNSAVMAGLVNDWHDREGLKFCPEPIAACLAFQDRLDWQAGKTYLVVDCGGVTVDIHVVGVCDTEKRELCQLLKGRSGPWGSETLDILFDEFLRGFIASAASGAGKRAITSFLNSSAKLRIMQAWETSKVGWKDKNDECRIDLTELGNYPLEVTMEDMDRARDDKN-GHGEELVGGYGTSVLVLKPAWMRKAFQQPIESISQAVAEQLDEPELQGVKSVVMVGGFSENFLV---QEAIRTCVLEKRPRADVHVLVHARPGLAIAEGATFFTSQGD--PDSVELDTPPEP 467          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7FTE4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE4_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.430e-54
Identity = 142/416 (34.13%), Postives = 210/416 (50.48%), Query Frame = 1
Query:    7 VAIDLGTARTAFSWKSVLDPTPR----VGVPENTDGVLTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQF---ADSTRGQLFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAILEKLGS--LTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGD-----SLRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSIS--GDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQ 1206
            VAID+G   TA+SWK+   P PR    + + +  +G +  KSP ++L         V +    + FG+ AE  F   A    GQLF+RF   +   S+++ D     P   +   + + L +++++ L  ++ A L  L +  +  +T   + WVLTVP        E MR  A  +       +DE LV CPE IAACLA  D     SL W   + YLVVDCGG TVD+ A  + D    +L  +     G WGA N DK+F   L+ F R  +  G   R   + F +SS   +I Q WE +KVG  D   +CW+N+  +   P  +T E ++  R+  N   E+  VGG+ T    +KP  M++ F      I +A+  QL + +LQ L +VVMVGGFS +V V+ S+ T+Q
Sbjct:   27 VAIDVGKFGTAYSWKADEHPIPRGVRNLEIEQPREGTVR-KSPNSLL---------VHRENRQVLFGDFAEGCFTGHASPVGGQLFRRFGRQLWLESSWSLDT----PVKCSRNRSVVELMEILVYLLNHVRDAALLNLSTAGVPPMTVDGVKWVLTVPASLPEQQQEAMRTAAVMSSLVDDGHDDEHLVFCPEAIAACLAFQDNLSQDSLPWNVGDIYLVVDCGGVTVDLHAVGVCDMEKRELSLMHEGTSGPWGAENADKQFDILLQRFARCAAPEGTTNRAMAN-FLSSSAKLRIMQAWETSKVGWKDKNDECWINVTEMKDYPLEVTIEGMDRARNNENRHGEQL-VGGHGTCFLVLKPAWMKKAFQESIDMISKAMSEQLDKRELQGLTSVVMVGGFSENVLVQQSRATLQ 426          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7FNB5_ECTSI (Heat shock protein 70-putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 5.950e-46
Identity = 144/453 (31.79%), Postives = 226/453 (49.89%), Query Frame = 1
Query:   10 AIDLGTARTAFSWKSVLDPTPRVGVPENTDGV--LTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQF-------ADSTRGQL--FKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIH-ALTFIKKAILEKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLR----WKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGR-EEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQP--NLRLVNSNNPDLAVVQGAVHFAQMTT 1311
            AIDLGT+RTA+++  V      +GVP++ D    +  K+ TA+LM     E +      V  FG+ AEE +       AD  RG L  FK FKM+++         +     T+ +   E+     ++  A+ +IK  IL+++  + +     ++WV+TVP   S     FMR  + +AG  A E++ + L LC EP AACLA+  S +    W   +K +V+DCGGGT+DI++  +  + P +L +L  P GG WG++ VD RF + L+ F  + SG + R++      +   + +T EWE  K  LA       V++  +      L+   +   R   N+ + +E  VGG    +  + P L+  FF    + IK  V  QL+ PDL DL  + MVGGF  S    + Q+ ++   E    P  +L++V +  P LAVV GA  F    T
Sbjct:    9 AIDLGTSRTAYAYTVVGREHIWLGVPDSPDDDRNVERKTLTAVLMQ-RCDEDEAEGGWRVAGFGDTAEEDYLTAKADEADEDRGSLVLFKFFKMELYQGGREQRARMDVDEPTAKAVGGEVLPMIFVVSKAIEYIKNQILDRVSMIAQEDDARLMWVVTVPAIWSNFGKRFMRAASHRAGLIADENDMQGLKLCLEPEAACLAVESSNQGVGSWHPGDKIMVLDCGGGTIDITSHLVESSDPLQLSELAEPCGGAWGSSIVDTRFKAFLQEFFDNASGGMTRLE-----GTHELFAVTVEWERQKTRLAR-GASLRVSIGDIADL-LELSPREIEELRKFHNDPKPKELHVGGTRR-NLVLPPALVESFFRGAITAIKDEVGTQLSTPDLHDLCYIYMVGGFCASP---LLQDAIR---EEFDDPGRDLKVVVAPRPGLAVVTGAALFGARGT 446          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7G6V4_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.740e-39
Identity = 145/459 (31.59%), Postives = 213/459 (46.41%), Query Frame = 1
Query:    7 VAIDLGTARTAFSWK--SVLDPTPRVGVPENTDGV--LTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQFADSTR---GQLFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKK---AILEKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLAL--GDSLRWKNDE--KYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADV-TGDCW-VNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSR 1335
            VAID GT R+A++++     D    V +P + D     T K+ TA L+ G    G V       +FG AA E +A S       LF+ FK D+ + S  +  ++ S    S      + L  +M  +L + K+   A L + G  T V    + WVLTVP      A  FMR  A +AG      N   L LC EP AACLA    D+    N E    +V+DCGGGTVDI+A +II   P  L+++ APDGG +G+T VD  F   LK F+          K      + T   I   WE  K     + +   W +NL+ L    +++T + + + R   N+G+  +   G   ++  +   L+  FF P   +I   + R      L DL  V +VGGFS    +R      ++   G   P  R+V+ + PDLA+V+GAV +   +T   S  +R
Sbjct:    8 VAIDFGTTRSAWAYQVSGQADNKILVKIPASADTSPSSTIKTETAALIGGRGSGGLV-------SFGPAAIEDYAASDHVADQALFRWFKFDLCE-SRTDQTEVGSVMTESVGGQHTVPLLGVMTASLRYFKEDVLAFLSRTGGRT-VDVNSVNWVLTVPAIYDDFAKRFMRQAAYEAGMI-DRMNSTRLRLCLEPEAACLAAITTDNPLTSNAEGKNMMVIDCGGGTVDITAHKIISVEPLTLEEVAAPDGGLFGSTRVDNAFRVWLKGFLGE--------KFQEIETTRTLLSIMMSWERKKATFQGLDSAAVWRLNLSELAG--YDVTNQDMENLRRSYNDGKPSSLFVGGEKFNVTLPTTLVTSFFTPTLQKIAECLRRIKRESQLHDLHRVFVVGGFSRCPMLR------EVIRNGLDLPAGRVVDVHEPDLAIVKGAVMYFDRSTSFNSRKAR 440          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: A0A6H5JSM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 5.690e-38
Identity = 138/457 (30.20%), Postives = 214/457 (46.83%), Query Frame = 1
Query:    7 VAIDLGTARTAFSWK--SVLDPTPRVGVPENTDGVLTAKSPTAILMAGTIGEGKVFQPKEVLAFGNAAEEQFADSTRGQ---LFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAIL---EKLGSLTKVTAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLA--LGDSLRWKN--DEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGL--ADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSR 1335
            VAID GT R+A++++     D T  V +  + D   ++     + + G  G G      +++AFG AA +++A S       LF+ FK+D+ + S  +  D  S    S      + L  +M  +L + K+ +L    + G  T V    + WVLTVP      A  FMR  A +AG      +   L LC EP AACLA  + D+    +  D+K +V+DCGGG VDI+A +II   P  L ++ APDGG +G+T VD  F    K++++   GD    K      + T   I   WE  K      D      +N + L +  +++T + + + R   N+G+  +   G   ++  +   L+  FF P   +I   + R      L DL  V +VGGFS    +R    T      G   P  R+V  + PDLA+V+GAV +   +T   S  +R
Sbjct:   13 VAIDFGTTRSAWAYQVSGQADNTILVKILASADTSASSTKTETVALIGGRGSG------DLIAFGPAAIDEYAASDNPDDQALFRWFKLDLCE-SRPDHTDFASVMTESVEARHTVPLLGVMTASLRYFKEDVLGCLSRTGGRT-VDVNRVNWVLTVPAIYDDFAKRFMRQAAFEAGMI-DRVHSTRLRLCLEPEAACLAAIVKDNPLTSDATDKKMMVIDCGGGIVDITAHKIISVEPLILDEVAAPDGGLFGSTRVDHAF----KVWLKEFLGD----KFQGIQTTRTLVSIMSSWESKKATFQGTDSAAGLRLNFSELAE--YDVTIQDMENLRTSYNDGKPPSLHVGGGKFNVTLPTTLVTSFFEPTLDKIAECLRRIKRESSLHDLYRVFVVGGFSRCPMLREVVRT------GLDLPAGRVVLVHEPDLAIVKGAVMYFNRSTIFNSRKAR 444          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 8.540e-37
Identity = 140/479 (29.23%), Postives = 214/479 (44.68%), Query Frame = 1
Query:   10 AIDLGTARTAFSWKSVLDPTPRVGVP---ENTDGVLTAKSPTAILMAGTIGEGKVFQPKE-----VLAFGNAAEEQFADS-TRG-------QLFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIH--ALTFIKKAILEKLGSLTKVT--AQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLR----WKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKV-------------GLADVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSR 1335
            AIDLGT+R+A+++         +GVP     +   +  K+ TAIL+           PK+     ++ FG+ AE+++ ++ T+G        LFK FKM++               A   S   + RL  + +   AL +IK  ++ +L      T  A DI WVLTVP   S   + FMR  A +AG    E++ E L LC EP AACL +    R    W+N  K +V+DCGGGT+DI+   ++  +P  L++L  P GG WG+T  D +F   +K  +R       R+ +     S+  +++  +WE  K              G+ D+ G   V      ++ FN T         L    R  A+  G       + P L+  FF      I +A    LAR    ++  V MVGGFS S    + Q  V   ++   QP LR+     P LA+V GA  +    + + S  +R
Sbjct:    8 AIDLGTSRSAYAYTVTGRDDIILGVPGRLNESKVSVERKTATAILLKRA--------PKKSGGWCMVTFGDGAEQEYLEARTKGGEAESDLALFKYFKMELFKGGRKGTKRSSVDDAEGISEDQKTRLPLIYVVSLALEYIKDVVINRLNKADSHTLKAFDIRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKVMVLDCGGGTIDITTHHVVSTNPLGLEELEEPAGGPWGSTTADAKFKLFIKELLRCTDEQWARLDK-----STEMFELMADWEAKKTDHYPGKNVWISIAGMLDLVGMS-VKDCEASRKQFNETSTVR-----LKTGSRAPAKAEGMGR-RVSLTPELVSNFFKEAMVEIIKATQTVLARQP--EISVVYMVGGFSASP---LLQEHVTAAVQ---QPGLRVEVVERPGLAIVLGAARYGTSDSTIVSRKAR 458          
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Match: A0A6H5K5B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B9_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.020e-36
Identity = 141/468 (30.13%), Postives = 205/468 (43.80%), Query Frame = 1
Query:    7 VAIDLGTARTAFSWKSVLDPTPRVGVPENTDGVLTAKSP-------TAILMAGTIGEGKVFQPKEVLAFGNAAEEQFA-DSTRGQ-----------------LFKRFKMDMHDNSAYNFDDLRSHPATSTSTLAEIRLEDLMIHALTFIKKAILEKLGSLTKV--TAQDIVWVLTVPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDS---LRWKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDKRFASCLKIFIRSISGDIGRIKEDSFFASSTW--WKITQEWEHAKVGLA-----DVTGDCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPPLMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNTVQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFA 1299
            VA+DLGT+RTA            + +P  ++  +T  +P       +A L   T    +   P  +LAFG  A E+F  D+ R +                 LF+ FK ++  NS Y   D     A    TL    L  +M   L  IK+ +L  L    +V  T  D+ WV+T+P      A  FMR  A +AG  +  D+   L LC EP AACLA+      L  K   K ++VDCGGGTVDI+   +    P KLK+L  P GG+WG+  VD  F     +++R + G     +       +TW  + +   WE AK         DV+ +    +  LG     L +    H  DL        R+  Y     G    L+R FF P   +I   +     +P L+DL  V +VGGFS    V+ +    +L   GC     R+++ +  +LA+V+GA  FA
Sbjct:    8 VAVDLGTSRTAIG----------ISIPGRSENEVTVCTPNGSGHCRSAQLKTETAALLEAKHPHGLLAFGKTARERFIKDAQRDEDGGGCTGRRTTSGAPNMLFRFFKTELCKNSGYTSVDQPVATAEGGETLP---LMTVMTAVLRHIKEDVLAHLSQRLEVDPTVADVNWVVTIPAIYDDFAKRFMRVSAHRAGIISAVDDASQLQLCLEPEAACLAVSIKEAPLLAKAGIKLMIVDCGGGTVDITTHSVESRRPLKLKELATPTGGEWGSVCVDSMFM----VWLRKLFGATAFAR-----VRTTWAFYSLMDYWEEAKTAFQGKEDEDVSLNMVDVVMELGFDKGKLAELVAAHNHDL-EPTHHLTRMNHYIDLPSG----LVRTFFAPTIDKIGNCLRSLRGKPLLRDLKYVFLVGGFSCCPLVQQAARA-ELDRGGC-----RVIDVDRRELAIVRGATIFA 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6080.13771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSN9_ECTSI2.420e-14645.71Heat shock protein 70-putative n=1 Tax=Ectocarpus ... [more]
A0A6H5JT12_9PHAE7.300e-12045.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRC9_ECTSI7.370e-6736.97Heat shock protein 70-putative n=1 Tax=Ectocarpus ... [more]
A0A6H5JDD7_9PHAE6.320e-5734.78Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FTE4_ECTSI2.430e-5434.13Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FNB5_ECTSI5.950e-4631.79Heat shock protein 70-putative n=2 Tax=Ectocarpus ... [more]
D7G6V4_ECTSI1.740e-3931.59Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JSM6_9PHAE5.690e-3830.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G266_ECTSI8.540e-3729.23Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5K5B9_9PHAE1.020e-3630.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6080contigH-paniculata_contig6080:1639..9612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue3.2e-29
Seed eggNOG ortholog55529.EKX54611
Preferred nameHSPA12A
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons13
Model size1655
Cds size1653
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930679.58976-CDS-H-paniculata_contig6080:1640..16671622930679.58976-CDS-H-paniculata_contig6080:1640..1667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 1641..1667 -
1691481402.985842-CDS-H-paniculata_contig6080:1640..16671691481402.985842-CDS-H-paniculata_contig6080:1640..1667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 1641..1667 -
1622930679.6018562-CDS-H-paniculata_contig6080:2555..26931622930679.6018562-CDS-H-paniculata_contig6080:2555..2693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 2556..2693 -
1691481402.9958615-CDS-H-paniculata_contig6080:2555..26931691481402.9958615-CDS-H-paniculata_contig6080:2555..2693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 2556..2693 -
1622930679.616593-CDS-H-paniculata_contig6080:3235..33101622930679.616593-CDS-H-paniculata_contig6080:3235..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 3236..3310 -
1691481403.0043924-CDS-H-paniculata_contig6080:3235..33101691481403.0043924-CDS-H-paniculata_contig6080:3235..3310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 3236..3310 -
1622930679.6358793-CDS-H-paniculata_contig6080:3691..39071622930679.6358793-CDS-H-paniculata_contig6080:3691..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 3692..3907 -
1691481403.0125668-CDS-H-paniculata_contig6080:3691..39071691481403.0125668-CDS-H-paniculata_contig6080:3691..3907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 3692..3907 -
1622930679.6490421-CDS-H-paniculata_contig6080:4197..43091622930679.6490421-CDS-H-paniculata_contig6080:4197..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 4198..4309 -
1691481403.0206623-CDS-H-paniculata_contig6080:4197..43091691481403.0206623-CDS-H-paniculata_contig6080:4197..4309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 4198..4309 -
1622930679.6656709-CDS-H-paniculata_contig6080:4695..47781622930679.6656709-CDS-H-paniculata_contig6080:4695..4778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 4696..4778 -
1691481403.0286155-CDS-H-paniculata_contig6080:4695..47781691481403.0286155-CDS-H-paniculata_contig6080:4695..4778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 4696..4778 -
1622930679.6840386-CDS-H-paniculata_contig6080:5189..53331622930679.6840386-CDS-H-paniculata_contig6080:5189..5333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 5190..5333 -
1691481403.036404-CDS-H-paniculata_contig6080:5189..53331691481403.036404-CDS-H-paniculata_contig6080:5189..5333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 5190..5333 -
1622930679.7012167-CDS-H-paniculata_contig6080:5655..57421622930679.7012167-CDS-H-paniculata_contig6080:5655..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 5656..5742 -
1691481403.0475416-CDS-H-paniculata_contig6080:5655..57421691481403.0475416-CDS-H-paniculata_contig6080:5655..5742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 5656..5742 -
1622930679.718364-CDS-H-paniculata_contig6080:6130..62771622930679.718364-CDS-H-paniculata_contig6080:6130..6277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6131..6277 -
1691481403.0612655-CDS-H-paniculata_contig6080:6130..62771691481403.0612655-CDS-H-paniculata_contig6080:6130..6277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6131..6277 -
1622930679.733463-CDS-H-paniculata_contig6080:6621..67051622930679.733463-CDS-H-paniculata_contig6080:6621..6705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6622..6705 -
1691481403.0704174-CDS-H-paniculata_contig6080:6621..67051691481403.0704174-CDS-H-paniculata_contig6080:6621..6705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6622..6705 -
1622930679.7510912-CDS-H-paniculata_contig6080:6998..71541622930679.7510912-CDS-H-paniculata_contig6080:6998..7154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6999..7154 -
1691481403.0793383-CDS-H-paniculata_contig6080:6998..71541691481403.0793383-CDS-H-paniculata_contig6080:6998..7154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 6999..7154 -
1622930679.7815514-CDS-H-paniculata_contig6080:7532..76581622930679.7815514-CDS-H-paniculata_contig6080:7532..7658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 7533..7658 -
1691481403.0877433-CDS-H-paniculata_contig6080:7532..76581691481403.0877433-CDS-H-paniculata_contig6080:7532..7658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 7533..7658 -
1622930679.795149-CDS-H-paniculata_contig6080:9354..96121622930679.795149-CDS-H-paniculata_contig6080:9354..9612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 9355..9612 -
1691481403.0966442-CDS-H-paniculata_contig6080:9354..96121691481403.0966442-CDS-H-paniculata_contig6080:9354..9612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6080 9355..9612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6080.13771.1prot_H-paniculata_contig6080.13771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6080 1641..9612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6080.13771.1

>prot_H-paniculata_contig6080.13771.1 ID=prot_H-paniculata_contig6080.13771.1|Name=mRNA_H-paniculata_contig6080.13771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=551bp
YAVAIDLGTARTAFSWKSVLDPTPRVGVPENTDGVLTAKSPTAILMAGTI
GEGKVFQPKEVLAFGNAAEEQFADSTRGQLFKRFKMDMHDNSAYNFDDLR
SHPATSTSTLAEIRLEDLMIHALTFIKKAILEKLGSLTKVTAQDIVWVLT
VPVCCSPAASEFMRHCAAKAGFYAGEDNDEALVLCPEPIAACLALGDSLR
WKNDEKYLVVDCGGGTVDISAFQIIDASPGKLKQLGAPDGGKWGATNVDK
RFASCLKIFIRSISGDIGRIKEDSFFASSTWWKITQEWEHAKVGLADVTG
DCWVNLAPLGKQPFNLTKEALNHGRDLMNEGREEARVGGYNTWDFGVKPP
LMREFFGPDCSRIKRAVDRQLARPDLQDLDAVVMVGGFSGSVHVRVSQNT
VQLCIEGCSQPNLRLVNSNNPDLAVVQGAVHFAQMTTQLPSTSSRGGPPH
PVAPTWEALTATVSYGILSTQVAGSDTATTFEPFILRGEGYPPNHTETKS
YSVKKDQPFNVVVMSSDNLEITAGSNSLEGRDLGLQYSETFMVETKTCLL
V
back to top

mRNA from alignment at H-paniculata_contig6080:1639..9612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6080.13771.1 ID=mRNA_H-paniculata_contig6080.13771.1|Name=mRNA_H-paniculata_contig6080.13771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7974bp|location=Sequence derived from alignment at H-paniculata_contig6080:1639..9612- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCCGTGGCCATCGACCTGGGGACGGCTCGCACAGCCTTCTCGTGGAA GAGCGTGCTGGACCCCACCCCGCGTGTGGGAGTTCCCGAGAACACCGATG GGGTTCTTACCGCGAAGAGTCCGACCGCGATATTAATGGCCGGGACAATT GGAGAGGGCAAAGTATTCCAACCCAAAGAGGTTTTGGCCTTCGGAAATGC TGCAGAGGAGCAGTTTGCGGACAGCACTCGGGGACAGCTGTTCAAACGGT TTAAGATGGTGAGCAGGCTGTGCAGCTTATCAATGCATGTTGGTTATTAA CACAGCACCCGGTAAGCGTGAGAGAGAGGTGAAGAGGGCTTCTATCTCTT TCATTCCCCCCCACAACATGCTACACAGAGCTAAAATTCATGAGGTGTCA TTTTCCGAATGATTTGCAAGTCTGTACGCAAGTAGCAATAAAAACGAATC TGCGTGCCCTCTGTCACGGTTCATTTAATTAAATTACATGCATACGAGGA TGAAACAAGGAGTTTAGCGGATGGCTATGACTGGCTATAACATGAGTGTA GTTTTTTTTTGTAAGTTTAGGGTGCGAAGTTGTTTTTCCAATAATTTTAC AGGCAGCCAGCCAACAGTCAATCTGTATCAGCTAAATTGTGTCCGCTACT TTACTGTCTGGTCTCCATACTGTTGTACGGTGACAACGATTATTCCGCGT TCTAAAAATAAAATAAGAAATATTTCAAATCTCTATTTCCTGGCTTCACG CCAACGCCTACTTAACATCAACAGTTCAACTTTTGACTATCAACGATTCC AGCTCTCGGAGTAGTACCAAAATATTTCTACACAGAAGAGCTAGGAAACG GTTAGATTAGAATTTTGAGTGCGTCGGCAAAGTTTTGAGCTAAGTCAATT TTACACTACATTTTGAGGGGAATGCGCCTGCGCCTAGCGTTTTTCAAGGG CGCTCGAAAATCTGATCTAACAACGTTGTAACTGGGGTTTTGGCACAAAT GGCACACCAAGCGGCGCTCGATGCGTCCCAGTAGAAAAAAGTTGAACTGT TTACAAGACGGGCAAGCAAAGGTTCCCCTCCCGAAGAGTTGAGTTTGCGT TATGCTGCTGGTGGATACGTACATATAGACTGATGCCTGCTGAGTTGTGC CTGTCTTTGCTATACTTGGTATTAATAATTTAGCACAGTGGTATCTAATA CACCCTGGCGGGTGACTGTCTGTTACAGTCAGTTGTCTGCGGGGGAGCAC CATTTTTTTGGTGCTCCCCGTATTGGCGTAATAGGCACTGGCTATCATGT GTAGTGGACGCAATAAAAATGGCAGCAGCATCTGATTTCGAATCTGCTGG TGGCGGCACTTGATTGGTCAAATGAAATTGGACCGCACAATTTTTTTTGT TATTCACGAAACACGATCTCCGACGGAGACATTCCATATCCCTTCATCTA AATGTCACAGTTGTCGTGTTTATAAACATACATATGAGGTGAAGACCTTG AGTCCATGAAGGAGAAAGAGTTCCCACCCCTCCGCCTTTGAAACATCATC CCGCAGACAGATCACCCTTCCTCTGAAAGCATACTCGAAGTCGCAGTAAG CGATGTGTGTATGTTCAAGATGTGGATGGCACCCGTCCAGAAATTTATAG GTTGCCCCAGTTCATGCACACTCTAGAAACCCTGATGCCGTTAAGTTGCG GGCAAATTCAGCGCCAGGTTGACAATAGAGCACTACACCGGGGGAATGGA AAACCGGGAGATCATTTTTTTGTGCAGCAACTCCATGTGCGTTTCTGTTG TAACATGATTGTATATTCAATGTGCTATATCTTACCGAGTAAAGCGACAC TGGGTGCACAGGTTCGGGCTATCTGTGGATCTTAAGGAGGAGTAGATGTT CTGCATGTGACTGCCATTGCTTACTCTTCTCGATCGTGTTCCGGCGCCTT TTAGGACATGCACGATAACTCGGCGTATAACTTCGACGACCTGCGAAGTC ATCCCGCAACAAGCACCAGCACCCTCGCTGAGATCCGTCTGGAAGACCTC ATGATCCATGCGCTCACCTTCATCAAGAAGGTAAGGCCGCCTACCAGCAG GTGTTCAACAGAATTGCAGTGATGCTGGTGGCATGCGCCTGCATTATACG GCGAATGCTGTGTTGGGCTAGGACCAGCCCAACGGCACGAGTACGGTTTC AAGTGGCGTTGAAGGCGCAGTCGCTATGTTGTGACACCAAATCCGGGCAC CTGTAGCCTCCATACATCCGCCACTTTGGCAAGTTCGTTATGTGTCGTAT CGAGTGAGGCATCCGACTCTGCGGCATGTTTTAGCAATGAGGTGCTTATT TTAGTTGCATCTGCTACCTCCTCATTTTCGATATCTTCACGCTCGGTTGC CATGCAGAACATCGCCGATGACTCAAGTCACTGGTCTTGCTTCCTCGATA TTGCGCAGGCTATTCTGGAGAAGCTGGGTTCGCTAACAAAGGTGACAGCC CAAGATATTGTTTGGGTTCTGACCGTACCCGTCTGCTGCTCGCCTGCAGC CTCGGAGTTCATGAGGCACTGCGCGGCTAAGGCAGGCTTCTATGCGGGCG AAGATAATGATGAGGTGAGATGTGCGCTGATGGCACTAATTCCATGGTAC CTGCCTGCAGTGCTCGCTGCCATGGATTGACATGCTAACAGCAGCACCTT GGAGTAGCAACGATCCTGGAGTGTAAAGCCGCATTCGATAAAACACAACA TGAAAGATCGATTAAAACCTTGAACCTTTGCAGGAGAGCTATCTGTATCG CCAAGCCATTGAACTTGTAGGGTAAACGACACCGCTTGAGCGATCTCGGT CGAGCGAACTCTGGTACATTTCTAAGGCGCACGGATTTCTCTGGGCGTGT TCAACAGGCGCTGGTTCTGTGTCCGGAGCCGATCGCTGCTTGTTTGGCGC TCGGGGACTCGTTAAGGTGGAAGAACGACGAGAAATACTTGGTAAGTGTT GCGTAGGGCGTACCGTCCAGAGCAATTGCGCTGTGCTGCTTCCTTGCTGG GTTGGTTCAACTAGCTCCAAGCAATTTGTTTCAGGGAGCAAGGCTTACAA GGTGTAATCATGTCGGCTACCCCTGCCTTCTGCTCTTGCGAGCAAAGACA CACATGATGACAAAGCATCCCTGAAACCCAGCTGACACGGACAGGAACTG GATGAAAACAATCAATATTGATGATGTGATGTAATCGGCGGTCTACTGGG TGATGTTGGGGACAATATAGGGTGTGGTAGTCGTGACATGTCCCTAGTCC ATCTGTGTTGAACGAACTTGTCTTTTTGCGCCAAGGTGGTCGATTGCGGC GGAGGTACGGTGGATATTTCTGCATTCCAGATAATTGATGCCTCTCCTGG AAAACTGAAGCAGCTGGGCGCCCCCGATGGTGGGAAGTGGGGAGCCACGA ACGTCGACAAGAGATTCGCGAGTTGCCTAAAGGTATCATGAAACTCGATC TCTACCTAGCTGACAATGTGCGGAGCTGCTCAGGCTTGATGGTTTCGTTC TATTCATGCATCAGTTTTCGGCACTGCACTCGGTTCCTTCTACTCGAACT GGAGATAACATCGTAAAATACCACGAGAGTGACTAGACGCACACGACAAA AAAGTTAGTTTTGCGTCCCCTGAATTCAAGGGGCGCATGTAGGTGAACCG AAGGGCATCGCAGGCATGCATGTTCAGTAGTTTGTAGGGATCCCTCTAGA GTCCTTTTTCGCCCAATGCATGCTGCGTTCAGGTTTCTGGTTTCCACGAG AGCGTGCTACGTGCTCTCGAAATTCCGTGTTCGCTATGGGTTTAGTGGCC CCTGTCCTTGTCACGTGCAGATTTTCATCAGGTCCATCTCAGGGGACATC GGCCGAATTAAAGAGGACAGTTTTTTCGCGAGCTCGACTTGGTGGAAGAT CACACAGGTGAGAAAGTACCTCTGCGAATATCATCCACACGTAGTAGTAG TAGGGTACAGCGATCCGCGGCACAGGGTGACACTTGCCCAGTCTTCAACC CACTACTGTGTACGTATAGCTTCGCATTAAATACTAGTCGTGTGAGTTGG CAATTATCTCCAGGAAACCTGGGGTGCTCGGCTAGATTCAGCAATCCGCC ATTTTTGCTGCAGGTCTCTATTTGATAGAGCAACCTGCGCGGTAGTGTGG TGCATGTTGTGTTCGTTTCGACTTGGAAATTCCGGCAACCGCGGTTGACA GCACGCCTGTTTGCCGCATACCAATATAGGAATGGGAACATGCGAAAGTG GGCTTGGCCGATGTGACTGGGGACTGCTGGGTGAATCTTGCTCCTCTGGG TAAACAACCATTCAACCTGACGAAGGAAGCGTTGAACCACGGCCGAGATT TAATGAACGAAGGAAGGGAGGAGGTACGCGTTTAGCCGCAGCTTTTAACA TCACTAGACTGGAGTAGCTCTTGCAGAATCATTTGGTCATCCCACACGGA TGCGGGAATTGCAGTCGACGTATCCGACTCTTCGTAGAAGCAATACTATT CAAGTGAATACCGACTTCAGTGGGCGGCGTGTGCAATTTTGTTTACATGG CTTTGGGTGGTCATTGCAAGGCGTTTGATTTTGTGATAATATCGTGTGGC GTGGGGGCGTGTCCTGATCTACAGCAGTAGAGCTCTTGGACATTTCACAG GAACCTTGGATGGTCCACCACTCGTTGGGAACGAGGCTACCTCCGTGGTT TAAGACTTGTTTTCCCTAGCAATGCTCATCGTTCTAATCCTTGGATGGTG CTATGCTACGTTTTGGCCCAACACCTTGGAACAGGCGAGAGTTGGTGGTT ACAATACTTGGGATTTCGGGGTGAAGCCTCCGTTGATGCGGGAGTTCTTC GGGCCCGACTGTTCTAGGTAAGAGATCAGATAAACGCTAAACGTTAGCCT TAGCCTTCCCGTCGGGCGCAGTTTACTGCATAACGTGTACTTTCTTTTCG TACATGAAATTATGGCATCGGATCTCATGATAAAAAAAGAGCAAACTATT TTCTCCTTGTTGTATATATAACATATTGGTACACCATTCCTTCCCCGTCG GGTACATCGTGTGAAAGGTTTGTCGCTAGGTACATGTGTAGCAAAGCCAC AATTCGACGCATTTGGTTTGTCTTCGCACGGTCATTATGTCCTCTACTGT GACATTTTATCCACAATCATGTCTGCTATCTCTCACACGAACCGTCGGGA CGCAGTCACCGCAATTGAATTTTCACTGACCAATCGCTCTATTAACATTG CAGGATCAAGCGGGCCGTTGATAGGCAGCTGGCCAGACCTGATCTCCAAG ACTTGGATGCGGTGGTCATGGTAGGCGGCTTTTCAGGAAGTGTGCACGTG AGGGTGAGTCAAAACGTACCATCCAGCGTGCATGCTCTTTCTGAGGGCGA TTGGAGAAGACGTCGTTGCAGCTCTGCTGTCGGTTATGGTTGTCAGAATG ATTTCTGGGTATGTGTGTAAGGGCGAGATGATTCAACCATCGTGTATCAC GTGAGTTATTTTTGAAATGGTTAACTCCCAAGACAGTTCCGGAGTCGTTG GACCCGTATGACTCACCAGTAGCAACACCGATACTGCAACGCCCCAATCC TGGCGCAGTCTGTTGCCCCAATACCTACATTTACACTGCTCTCACTTGGC AGGAGACTGTGCAGCTTTGCATCGAAGGTTGTTCACAGCCTAACCTACGG CTAGTCAATTCGAATAATCCAGACCTTGCAGTGGTACAAGGAGCTGTCCA CTTTGCTCAAATGACGACGCAGCTGCCGTCTACATCCTCTCGCGGCGGGC CTCCGCATCCCGTGGCACCCACTTGGGAAGCGCTGACAGCCACCGTCTCC TACGGTATCCTGTCCACCCAGGTGAAATGCATTTATTCCTATTCGTTGGA TGCAACGCTCGGAGTACCGAGTACAATGACCGCAACTGTAATATTGACCC GGGGTCCATCAGGACAACGTGAAAAAAATATTCTTGATAAACACCGTTGT TGAGGTGTAGCGCATGGATGAGCAAGCCCAACTGTATCGGTACTCCCGAG CGCTTGTGCAGGTTCATCGAAACTCCGGCATGCTTTCTCGACTGTCGAAG CGGTTGCCAAACTCTCGTGTCCGACGTTTTCATCTTGCCATGGGTCGTCG CGATGCCCGCAAACCGTTTCCTCATCCCATAGCTCCCGCCGTGCGTTGTA ATGGTTTTATTTAATTCGTCTGAGACTATTTGTGTGTACATACATGTTTC AGGTAGCAGGCAGTGACACAGCCACAACCTTCGAGCCGTTCATACTCCGT GGTGAGGGCTACCCACCAAACCACACGGTGAGACGACACAAATACTCCAG CACGTTTACTTGTAACTCGGATGTTGGACTATAGTAGGTGGTAGTATTTG TCTTTCTATGTTATGATACTGTTCAATGTATCTGAGACTGTGAGAGTTGT CTACGGTGGATTCGCCCCCATCGGTGAAGGGGAAACAAATAGCAATAAAC GGACGTTGTCAGTATATATGTTGAATAATCTCAGCGAACACTTGACGTTC CACTTTCACTCGTGATTCCTTGGTCCATAATGTCAATGCTAATATTACTT TCGCAACAAACGCTCCTTCATTTGTAGAGTCCGCCACTTGCATGGTACCA AGTTGCTCCATTCACACCAAATGCCCCCCTGTGCGAGTGCCCGCCGTTAG AATTCGAGCGAGGGAGGCTGAATCCCATAGTCGTGGTTACTACTTTACGG CAGGCACTATACAGGCACTTTTGACATACCGCCACCAACAGTGTCATTCC AGCAAAAATCGTCAACCGATGGAGCAAACATTAAACCTCGTGATATATAT GATGCCTTCTTCACCGCAGGAAACGAAAAGCTATTCGGTGAAGAAAGATC AACCTTTCAACGTGGTGGTAATGTCATCCGATAATCTCGAAATTACCGCG GGCAGCAACTCTCTGGAGGGACGAGATCTAGGTTTGCAGTACAGCGAAAC CTTCATGGTGAGCATTGATTACTGGACAAATTATTTCTTGGAGTGGAGCG GCTCGATTCCTTGGGTACGCTTGTGGGGTCTTCGTCTTCGGACTGTTGAG TGTATGTATTGACGTGACAATAAAGAGGACCCGTCGCTCGCACTAGCTTG CTACCTTGAAGCTCTTTCTAAATGCTCCAGGGAGGGAGGCTCGATTTTCC AATTTTTCGCTTCTGCATCGGGCGTGGTGACCAACTACGGGGTGCTCTTT AAGAACGTGACGTCGTTCGGGAAATCCCGGGGCAATCGAAAAAATTAAGT CCAATCAACATAACCATTTTTCTTCTCTTCTATGCCAACAAAGGTCTGGG TTCAGAATTACCAACGGCACGGAATCGACACACCCCGGCACCGATATTTG CCTGTGCACAACCCCATAGCACGATGCACAAATTATTGTTTAACATACCC AGCGAAATGCAGAGTCCAACCGGCGAAGGTCCGCATCGCCCGGGCCGTCC CCAATGTTTCGGAGGTCACTCTTCGTTCTTTTTCGCACAAAACTCAATGG CCTCGGGGTGTTATGACTGCCTACGAGGCGTTCGTGTAAGTGTTGTTCTG ATACTTTGCGCCGGGGCGATAAACGTTTTGGGGTCTACCTGATGTCCCCC AGGGCGTGATGACGGCGGGGATATTTAGAGCGAGCTTTACGGTATGTGAT TTATTTATGAGGGAGTGATAGCTGATGAGCTGGTCAAGTTGAAAAGCTGA GGGGACACCTAAAAACGAGTCAGCGATTGCATGCATTGTCAGCTGCTAAA TTCGATGACTGTTTTTGTTGGCTCAATTACTTGTATTTCACACGAGCCTG GTAATGATGTGATTCCTGAGCAATCCTTCTTGCACCAATTCCCAGGTCGA AACCAAAACTTGCTTGCTGGTGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6080:1639..9612-

>mRNA_H-paniculata_contig6080.13771.1 ID=mRNA_H-paniculata_contig6080.13771.1|Name=mRNA_H-paniculata_contig6080.13771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3306bp|location=Sequence derived from alignment at H-paniculata_contig6080:1639..9612- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGCCGTGGCCATCGACCTGGGGACGGCTCGCACAGCCTTCTCGTGGAA
GAGCGTGCTGGACCCCACCCCGCGTGTGGGAGTTCCCGAGAACACCGATG
GGGTTCTTACCGCGAAGAGTCCGACCGCGATATTAATGGCCGGGACAATT
GGAGAGGGCAAAGTATTCCAACCCAAAGAGGTTTTGGCCTTCGGAAATGC
TGCAGAGGAGCAGTTTGCGGACAGCACTCGGGGACAGCTGTTCAAACGGT
TTAAGATGTATGCCGTGGCCATCGACCTGGGGACGGCTCGCACAGCCTTC
TCGTGGAAGAGCGTGCTGGACCCCACCCCGCGTGTGGGAGTTCCCGAGAA
CACCGATGGGGTTCTTACCGCGAAGAGTCCGACCGCGATATTAATGGCCG
GGACAATTGGAGAGGGCAAAGTATTCCAACCCAAAGAGGTTTTGGCCTTC
GGAAATGCTGCAGAGGAGCAGTTTGCGGACAGCACTCGGGGACAGCTGTT
CAAACGGTTTAAGATGGACATGCACGATAACTCGGCGTATAACTTCGACG
ACCTGCGAAGTCATCCCGCAACAAGCACCAGCACCCTCGCTGAGATCCGT
CTGGAAGACCTCATGATCCATGCGCTCACCTTCATCAAGAAGGACATGCA
CGATAACTCGGCGTATAACTTCGACGACCTGCGAAGTCATCCCGCAACAA
GCACCAGCACCCTCGCTGAGATCCGTCTGGAAGACCTCATGATCCATGCG
CTCACCTTCATCAAGAAGGCTATTCTGGAGAAGCTGGGTTCGCTAACAAA
GGTGACAGCCCAAGATATTGTTTGGGTTCTGACCGTACCCGTCTGCTGCT
CGCCTGCAGCCTCGGAGTTCATGAGGCACTGCGCGGCTAAGGCAGGCTTC
TATGCGGGCGAAGATAATGATGAGGCTATTCTGGAGAAGCTGGGTTCGCT
AACAAAGGTGACAGCCCAAGATATTGTTTGGGTTCTGACCGTACCCGTCT
GCTGCTCGCCTGCAGCCTCGGAGTTCATGAGGCACTGCGCGGCTAAGGCA
GGCTTCTATGCGGGCGAAGATAATGATGAGGCGCTGGTTCTGTGTCCGGA
GCCGATCGCTGCTTGTTTGGCGCTCGGGGACTCGTTAAGGTGGAAGAACG
ACGAGAAATACTTGGCGCTGGTTCTGTGTCCGGAGCCGATCGCTGCTTGT
TTGGCGCTCGGGGACTCGTTAAGGTGGAAGAACGACGAGAAATACTTGGT
GGTCGATTGCGGCGGAGGTACGGTGGATATTTCTGCATTCCAGATAATTG
ATGCCTCTCCTGGAAAACTGAAGCAGCTGGGCGCCCCCGATGGTGGGAAG
TGGGGAGCCACGAACGTCGACAAGAGATTCGCGAGTTGCCTAAAGGTGGT
CGATTGCGGCGGAGGTACGGTGGATATTTCTGCATTCCAGATAATTGATG
CCTCTCCTGGAAAACTGAAGCAGCTGGGCGCCCCCGATGGTGGGAAGTGG
GGAGCCACGAACGTCGACAAGAGATTCGCGAGTTGCCTAAAGATTTTCAT
CAGGTCCATCTCAGGGGACATCGGCCGAATTAAAGAGGACAGTTTTTTCG
CGAGCTCGACTTGGTGGAAGATCACACAGATTTTCATCAGGTCCATCTCA
GGGGACATCGGCCGAATTAAAGAGGACAGTTTTTTCGCGAGCTCGACTTG
GTGGAAGATCACACAGGAATGGGAACATGCGAAAGTGGGCTTGGCCGATG
TGACTGGGGACTGCTGGGTGAATCTTGCTCCTCTGGGTAAACAACCATTC
AACCTGACGAAGGAAGCGTTGAACCACGGCCGAGATTTAATGAACGAAGG
AAGGGAGGAGGAATGGGAACATGCGAAAGTGGGCTTGGCCGATGTGACTG
GGGACTGCTGGGTGAATCTTGCTCCTCTGGGTAAACAACCATTCAACCTG
ACGAAGGAAGCGTTGAACCACGGCCGAGATTTAATGAACGAAGGAAGGGA
GGAGGCGAGAGTTGGTGGTTACAATACTTGGGATTTCGGGGTGAAGCCTC
CGTTGATGCGGGAGTTCTTCGGGCCCGACTGTTCTAGGCGAGAGTTGGTG
GTTACAATACTTGGGATTTCGGGGTGAAGCCTCCGTTGATGCGGGAGTTC
TTCGGGCCCGACTGTTCTAGGATCAAGCGGGCCGTTGATAGGCAGCTGGC
CAGACCTGATCTCCAAGACTTGGATGCGGTGGTCATGGTAGGCGGCTTTT
CAGGAAGTGTGCACGTGAGGGTGAGTCAAAACGATCAAGCGGGCCGTTGA
TAGGCAGCTGGCCAGACCTGATCTCCAAGACTTGGATGCGGTGGTCATGG
TAGGCGGCTTTTCAGGAAGTGTGCACGTGAGGGTGAGTCAAAACACTGTG
CAGCTTTGCATCGAAGGTTGTTCACAGCCTAACCTACGGCTAGTCAATTC
GAATAATCCAGACCTTGCAGTGGTACAAGGAGCTGTCCACTTTGCTCAAA
TGACGACGCAGCTGCCGTCTACATCCTCTCGCGGCGGGCCTCCGCATCCC
GTGGCACCCACTTGGGAAGCGCTGACAGCCACCGTCTCCTACGGTATCCT
GTCCACCCAGACTGTGCAGCTTTGCATCGAAGGTTGTTCACAGCCTAACC
TACGGCTAGTCAATTCGAATAATCCAGACCTTGCAGTGGTACAAGGAGCT
GTCCACTTTGCTCAAATGACGACGCAGCTGCCGTCTACATCCTCTCGCGG
CGGGCCTCCGCATCCCGTGGCACCCACTTGGGAAGCGCTGACAGCCACCG
TCTCCTACGGTATCCTGTCCACCCAGGTAGCAGGCAGTGACACAGCCACA
ACCTTCGAGCCGTTCATACTCCGTGGTGAGGGCTACCCACCAAACCACAC
GGTAGCAGGCAGTGACACAGCCACAACCTTCGAGCCGTTCATACTCCGTG
GTGAGGGCTACCCACCAAACCACACGGAAACGAAAAGCTATTCGGTGAAG
AAAGATCAACCTTTCAACGTGGTGGTAATGTCATCCGATAATCTCGAAAT
TACCGCGGGCAGCAACTCTCTGGAGGGACGAGATCTAGGTTTGCAGTACA
GCGAAACCTTCATGGAAACGAAAAGCTATTCGGTGAAGAAAGATCAACCT
TTCAACGTGGTGGTAATGTCATCCGATAATCTCGAAATTACCGCGGGCAG
CAACTCTCTGGAGGGACGAGATCTAGGTTTGCAGTACAGCGAAACCTTCA
TGGTCGAAACCAAAACTTGCTTGCTGGTGGTCGAAACCAAAACTTGCTTG
CTGGTG
back to top