mRNA_H-paniculata_contig6077.13767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6077.13767.1
Unique NamemRNA_H-paniculata_contig6077.13767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.650e-14
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 EDDIPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADLPVLRKGLRRLHREIDALATELLDKLPHTVRG 243
            +D IPTLL +  D EE +++ +MYAV +ASNPLV  A VS+++ + E D P+ R  LR L + +D L  +LLDKLPHTVRG
Sbjct:  700 DDLIPTLLTSAED-EEEVMDIVMYAVGNASNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLMNQLLDKLPHTVRG 779
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BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.010e-13
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   10 IPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADLPVLRKGLRRLHREIDALATELLDKLPHTVRG 243
            + TL+ +IGD EE +I T+M AV+++SNP VT A+ S  +AK   D    R GL RL  EID   TELL KLP TV+G
Sbjct:  966 LATLIGDIGDAEEQVIATVMCAVENSSNPFVTSAIASVCMAKHGRDCSKDRLGLARLQEEIDQFTTELLGKLPQTVKG 1043
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BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.570e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 EDDIPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADLPVLRKGLRRLHREIDALATELLDKLPHTVRG 243
            +D +P LL+NIGD+E ++I+TI+ AV S SNP    A VSR +   + D P+  +GL RL   +D   +++L++LP TVRG
Sbjct:  767 DDHMPFLLENIGDHEHDVIDTILAAVASTSNPFAMAAGVSRTLRMSKVDFPMHSEGLGRLQSIMDDFTSKVLEQLPQTVRG 847
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BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Match: D8LH97_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH97_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 7.480e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 EDDIPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADLPVLRKGLRRLHREIDALATE 210
            +D IP LL +IGD+E++IIET+++AV +ASNP    A VSR + +   D P+ ++GLRRL   ID    E
Sbjct:  631 DDHIPALLVSIGDHEQDIIETVLFAVANASNPFGMAAGVSRFLRRARVDHPMHQRGLRRLQTRIDRFTLE 700
[Close]
BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-8
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    4 DDIPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADLPVLRKGLRRLHREIDALATELLDKLPHTVRG 243
            DD+  L+K      +++I T++      SNPLV  A VS+++ + E D P+ R  LR L R +D L  +LLDKLPHTVRG
Sbjct:  705 DDLRELVKAGLPLHDDLIPTLL-----TSNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQRIVDHLINQLLDKLPHTVRG 779
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6077.13767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE1.650e-1451.85Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FMR2_ECTSI2.010e-1351.28Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LHA0_ECTSI9.570e-1344.44Transient Receptor Potential Channel. Partial sequ... [more]
D8LH97_ECTSI7.480e-1147.14Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FX79_ECTSI1.510e-843.75Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6077contigH-paniculata_contig6077:10833..12152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue5.2e-13
Seed eggNOG ortholog2880.D8LH99
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size245
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6077.13767.1prot_H-paniculata_contig6077.13767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6077 10833..12152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930679.0058897-CDS-H-paniculata_contig6077:10832..109211622930679.0058897-CDS-H-paniculata_contig6077:10832..10921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 10833..10921 +
1691481402.7454221-CDS-H-paniculata_contig6077:10832..109211691481402.7454221-CDS-H-paniculata_contig6077:10832..10921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 10833..10921 +
1622930679.025819-CDS-H-paniculata_contig6077:11578..116991622930679.025819-CDS-H-paniculata_contig6077:11578..11699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 11579..11699 +
1691481402.7578862-CDS-H-paniculata_contig6077:11578..116991691481402.7578862-CDS-H-paniculata_contig6077:11578..11699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 11579..11699 +
1622930679.04001-CDS-H-paniculata_contig6077:12119..121521622930679.04001-CDS-H-paniculata_contig6077:12119..12152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 12120..12152 +
1691481402.7674494-CDS-H-paniculata_contig6077:12119..121521691481402.7674494-CDS-H-paniculata_contig6077:12119..12152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 12120..12152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6077.13767.1

>prot_H-paniculata_contig6077.13767.1 ID=prot_H-paniculata_contig6077.13767.1|Name=mRNA_H-paniculata_contig6077.13767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
EDDIPTLLKNIGDYEENIIETIMYAVKSASNPLVTCAVVSRHIAKVEADL
PVLRKGLRRLHREIDALATELLDKLPHTVRG
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mRNA from alignment at H-paniculata_contig6077:10833..12152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6077.13767.1 ID=mRNA_H-paniculata_contig6077.13767.1|Name=mRNA_H-paniculata_contig6077.13767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig6077:10833..12152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGACATCCCCACTCTCCTGAAAAACATTGGAGACTACGAGGAGAA
CATTATCGAAACGATCATGTATGCCGTCAAGAGTGCAAGGTGAGAATGCT
TCGTTTTTGAGCACAACGAGCCCATAAGGGACAAGGCAGGGGGTTGTTTT
GAAGCCTCCCTTTCCATTCATTCTGCGCGGCCTCGAGCGTTCACATTTTC
ATTTCTCTCCAACCTATGTCCTTCCTCTGCGCGACTTGGGTAGGCGCTCT
TGCTGGTTGCAGTGATGGCATACCATTATGGAGTAAGGTAGAGCTTAAAT
GTAGAGCTTGCTTTCGGCTTCAGACGATCCTGGTTGCTTATTGTGTAATA
TTTTCGTTGCCCAGATTCAGCTTCTACCTACTGTACGAGGGTGTTGCTAT
CGAGAGAGGTGTGCTGGTATGTGTTACATCAGCATTGCTGTATTCTTTTG
AGTGGCGCAGCACCGATGCTTTCTCTATGGAGTAGCCAGCGTTTTATCCT
GAAGCGATGCGCTTGTACCGCCCACTGCTAAGCATAGGCGAATCCCTGTT
GTCGGGCACCCTCAGCCACATCAGACAGGTTTGCGGCAGTTGTCTGACGA
TGTGCTTAATCCGCGGCACAATGTTTATTGTCGGCCATGTCGAAATGTGT
CATTGTAGGTATACATAGTCATGTTTCTAACTACATTAATTTTACAAGTT
ATTTCGCCGCACGTCTTCACCCTGCGATGTTGCACACGACCAAAAGCAAT
CCGCTGGTCACCTGCGCAGTGGTGTCACGGCACATAGCGAAGGTTGAAGC
AGACTTGCCGGTGCTTCGAAAGGGACTTCGCAGGCTTCACCGCGAGATCG
ACGCCCTGGCGACCGAGGTGAGGTGTGATTTGTTTGCCGCCGGGAAGCGT
TGCTCACGTTTTCTTTTGTATAAACACCATTTTTTTTCCGTTGCGGAATA
GTCCATCTATCAGAACCCCCGGTCCGAAGCTGGGAGTGCAATGCCTCGGT
TCTTGCCTTAAATTATCGCGCGGTGGGAGGAGTAGTCCCACCTGCTCGTC
CTCGTTGGATTTGACGGTGGTATACTCTGGGAGTATCCTCCCTTACATAA
GCGCCATGACACTCTTCACATGGTTCTAGTTCCATCGTCGAATCACCCTC
AAACGTCAATGAACTGCTATGATAGCGACCTGAACGTATTTGAAACATGA
AAGCACGGACCAATGCATCTGTATTTCGCGGACGCCGATTAATGTGATGT
CGACTTAGCTTACCTTTTCCCGTTAACCTTTATACAGCTATTGGACAAGC
TCCCACACACAGTCAGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6077:10833..12152+

>mRNA_H-paniculata_contig6077.13767.1 ID=mRNA_H-paniculata_contig6077.13767.1|Name=mRNA_H-paniculata_contig6077.13767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig6077:10833..12152+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGACATCCCCACTCTCCTGAAAAACATTGGAGACTACGAGGAGAA
CATTATCGAAACGATCATGTATGCCGTCAAGAGTGCAAGGAAGATGACAT
CCCCACTCTCCTGAAAAACATTGGAGACTACGAGGAGAACATTATCGAAA
CGATCATGTATGCCGTCAAGAGTGCAAGCAATCCGCTGGTCACCTGCGCA
GTGGTGTCACGGCACATAGCGAAGGTTGAAGCAGACTTGCCGGTGCTTCG
AAAGGGACTTCGCAGGCTTCACCGCGAGATCGACGCCCTGGCGACCGAGC
AATCCGCTGGTCACCTGCGCAGTGGTGTCACGGCACATAGCGAAGGTTGA
AGCAGACTTGCCGGTGCTTCGAAAGGGACTTCGCAGGCTTCACCGCGAGA
TCGACGCCCTGGCGACCGAGCTATTGGACAAGCTCCCACACACAGTCAGA
GGTCTATTGGACAAGCTCCCACACACAGTCAGAGGT
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