mRNA_H-paniculata_contig6077.13766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6077.13766.1
Unique NamemRNA_H-paniculata_contig6077.13766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6077.13766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6077contigH-paniculata_contig6077:4123..8575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size575
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6077.13766.1prot_H-paniculata_contig6077.13766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6077 4123..8575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.9176507-CDS-H-paniculata_contig6077:4122..43081622930678.9176507-CDS-H-paniculata_contig6077:4122..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 4123..4308 +
1691481402.7143571-CDS-H-paniculata_contig6077:4122..43081691481402.7143571-CDS-H-paniculata_contig6077:4122..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 4123..4308 +
1622930678.9338806-CDS-H-paniculata_contig6077:6424..65501622930678.9338806-CDS-H-paniculata_contig6077:6424..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 6425..6550 +
1691481402.7251825-CDS-H-paniculata_contig6077:6424..65501691481402.7251825-CDS-H-paniculata_contig6077:6424..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 6425..6550 +
1622930678.952414-CDS-H-paniculata_contig6077:8314..85751622930678.952414-CDS-H-paniculata_contig6077:8314..8575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 8315..8575 +
1691481402.7351022-CDS-H-paniculata_contig6077:8314..85751691481402.7351022-CDS-H-paniculata_contig6077:8314..8575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 8315..8575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6077.13766.1

>prot_H-paniculata_contig6077.13766.1 ID=prot_H-paniculata_contig6077.13766.1|Name=mRNA_H-paniculata_contig6077.13766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
PLYIITPDDLGYNEFSVGTMDAGLKATSIRVPLFALTILSGKKEAIKWAE
KYINDHVEDKTAVWNIVRGEGKTIRSLTYAASALPTAHGAGEDTFDAVYS
AMLKAAWNSATPNKSPPDHLDSSILSRGNANATSELINEFLLKKLTHNSG
TSEQKMPLPPLAGAAFRGNWRLFKRVRREYTDLGGIWDKTE
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mRNA from alignment at H-paniculata_contig6077:4123..8575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6077.13766.1 ID=mRNA_H-paniculata_contig6077.13766.1|Name=mRNA_H-paniculata_contig6077.13766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4453bp|location=Sequence derived from alignment at H-paniculata_contig6077:4123..8575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTGTACATAATCACTCCGGACGACCTCGGATACAACGAATTCAGTGT
TGGCACCATGGACGCTGGGCTCAAGGCCACCAGCATTCGCGTACCTCTAT
TCGCACTCACCATTTTATCGGGCAAGAAAGAAGCCATCAAGTGGGCGGAG
AAGTACATCAATGATCACGTCGAAGACAAAACGGCGGTGAGTTACGATAT
GTATGTCGAGCACGCAAGATGTGTTGGGTCACAATATATCATGTAATGTC
TATACCTGCGCAGGGTGTCAATGTGCGCAAAAACGGACCCACCAGAATAT
AGGAAGGCAACACACCCTACATCGTACGTGTACGTTTGGTTGATCCTCCA
ATATAAACCCGAACACGTGTGCAATATATCAATATTGGTTCGTTCAATTT
GATCGTCGTTCTTGTGGCAATACATTTTGTCCGCACAACACGGCCACCCA
AATATGCCACAGCCTCAATGCAATACAATGTCACTTATTGAAGAAATTGC
CAACTCCAGTTAAGCATGTTCCAACACGTGCCACCTTCCAAGGGGTTCGC
GCTCGCACATGAGCGGTATATATTTTATATTTTACATGATACCTCGAACT
CTCGTGCAAATTAGGTTAGGTGCAGAAGGTCTCGCGGCAACGAATATGTT
ACGTACGGGTACCGCAAGGGCGTGCCCAGGATGAATGTTCGTAAAACCCA
AGCCTTGATTCTCGCATTGTAGTGACTTGCTGACAATTCGTTCACACCAT
TGCAGTGGGTCGTGGCTGCTACTAGAACGTTTCAAAATAGTTATGGAAGC
TTGGTGTTGCCGTCATAACCCATGATCTCAATACACAGGTACACGGAAGA
TTTGCTGCGGAGTCTTTCATTTTAAGCAATACCGCTCGATAGATGCCGGT
GGGATGCCAGACCCATAACATGCACACAGATGCCTGAGGGGACGAAGGGA
CAATCTGATGCTCCTTTTTTCAGCCTCCCCAGTATCTTGCACAAGAAAGT
TGCGATAACATGAGGGGTTGTACCTCTCCTTTCCCCGGAATCCAAACCCC
ATATATTTTGTCCTCGCTACGGGGGGAAAGGGCACTGATTGACCGTATTT
AGACATGCGTACTCATTTTGTACCGTATAGCATATCTACTCTGCTATTAT
CTTGTTCGTGGATAGCGAGTTAGAGCTCTATTGTCCACTGAAGTGGTGTA
GATTAACGAATAATTGGCCAGCACGGTGGTGACTGAGAACACTCCATCAT
GCAACATGTCTGATAAAGCCCCCGAGGGTCAAGTTGTGACTGCAGGGCGC
GTAAGCCAGGCTTCAATCCATGTGACCGATATAACTTACCTGTAGTGAGG
CTACGCGCGCATTAAGTGTACTTGAGTATAGCGCCAGGCAATGGAGTAAC
CATATTTAGACGGAAAAGCAGGGGAAGATTAGGCGGCGTGTCGTATTGAC
GGTGCTTGTATTATGTCACGCTGGGGTTATACAGCTCACAATCATGACTG
CAGTGATGAGCAGCAGCAGAATATCAAAATGAGGAGTTCAGTTAGAGTTG
CGTTGTTCAAGGAACGAGAGATACGAGCTCCCTAAACATCGCAGCCCTAG
GGAGTAGGCTAGTAAAATTCCTGGCGGCGGCTTGCCGCCGAGATGCACCT
GAGGCGTCGGCGACTGGGCCGCCTCCGGCAGCCCGAGAGCCCTCACAGCA
CTCCCGAGAGAGCGCTCCCTCCTAGGGGTCGCCGGAGCCCCTCGGAGGGA
GCCCCTCGCGTAGCGGTCCCTGGAGAGAATATTTTTAGGAAAATGCTTCA
TCTTGCATTCATCTTCTCAACACACTTTGCCCTTCTTAACCGATATTCCA
GCGCAAAGGTATGCAGCTGCAGCGCTATATAAGGCAGTTGTTATTCAGTC
ACACATGTGGTGTTTTGTTGCATGAAACGGTAGCGAAAGAACGCAAAAAA
TATAAACATCGCGTTTACGGCAAGTAAACGGAACAACAAGTGCCTTTCGG
TGAAAGAAAATCACGCAAATAAAGGAAAAAATGTAGCCTCACAGGAAAAA
ATACCTCCACCAAAATTTTCGCCTACCGCAATTTTCCAGCGGCCCCAGAA
CATTTTCGGCGGCAAGCAGCCGAACGTGCGTCAGACTTTCGGCGGAAACG
CCTTTTTTCTACGTTTCCCAGTGAAGCCGCGCGAAATAGGGCCCAATTTA
ATACCATGCTGTGAAGCCTCGCCCGTCTCTTAAACGTCGCTTACATGAAC
CATATCTTTGTTTCGTTCTCATACGCGGGCTGCAATGGCGGGTGTGATGC
AGGTATGGAACATTGTACGCGGCGAGGGAAAGACCATTAGATCGTTGACG
TATGCGGCATCTGCGTTGCCGACCGCTCATGGTGCCGGGGAGGACACATT
CGACGCCGTGTACTCTGCTATGTTGAAGGTGATATTGGTATATACACTCT
CCAAACAGCCGAAGTCTTGTACACGTACGTACATACTGTCAGATACTGCT
GAGCGTTGATACGATTGGTGGCGTCTGTAGGAGGAGTTAGCTCTGCTCGT
AGAAACTGCTTTCCGTGGACAGGAGAATGTTTGGAAACCAATTCTCATTG
TTGAGGTATCTTATTGTGGAAGAACAAAGTTCCTGATAACAGGGACCGTT
TTTTTGGGATGTTCCTTTCATTATTTCAGATGTAACGACCTGGATCATAT
CGATTAGACGTTGAGCTTCGAGCCGGCATCTATTTCACACTCGTTTTAAA
AAAATCTCTGCAAGATCTCCCTAGCTTCTGCCTCAAGGTGCATCACTGCA
GCACGCGCTCCTATAGGTCTTAGGTAACCCTCAAATACCACCCCGCTGGG
TTCAGGTTACTGTTTTGAAATATTGTTTTTTTCTCCTCAAAATCCTGACG
GTTCCAATTTAGAATTGGGAAATAGATAAAAAAGAGTATACCTCCTCTGA
AAACGGCAAAAAGGAGAACAGCGGCTGACGCGTGCCGAAAGATACCGACG
AGTGAGCTGTGCAAGATACATGACCCTCGTTTTTATTCGACCCGACACAC
ACCCTTGGGATGCTCCACTAACCGTTTGTCCGTCGAAAAAAGCATCGATG
ATGCAGGAACTGATGATTGCAACAATGATCCACCACGGGGGTGGTGAAAT
ACCGCCTTTTGTCGACGTTTTGGGGGTATATACCCATTTCCTCAACTACG
ACCGGGAAAATGCCCTTTTTGACCATGTTTTCCAATTTTTTTCCGCGGGG
TGCTCCTGATGGTCCGACCGTGGGCGGTGAATCTCCGCCTGTTTGTCGAA
GAATGGATCTTTGGTGACTTTTGGTTGTGCGATTGCGCGACAAGGCGACC
CAGCTCAGCCCAACGCAACTCAGTCCTAAAAAGAATACTATCCGTGGCCC
TGACGTCTTCGTCGTGTCAAATTGGGATCCGGTAAGAGCTAAAATGGACT
AAAAGATGCGCCGCTTCGAGGGGGTGCTGATTCAGGCTCGACAAGTAGCA
ACTCTGGCGTTCTTCGTAGAGTGTTCCCAGCTCTTGCCGCTGAAACCGTG
GTAGTTACTGCCTTTAACCGTCACGAGGACGTACACTTGATGTGCCATTC
GTGTTCCTCCGACGCATCGGCTCTCAACGAGCGACCTGGGGTGCTTTGTT
GGTTTCCTCACACAAGCGAAACGGCGTGTCCTTTCAAATACCAGTTGGTG
CCAGAGGTAGACCTGGGATCACTACAACATTGGAGGACTGGCGGCCCAGA
GAACGACTCTTTTAGAGGGAGGGACAGTTGTCCATATATTGACTGATTCT
GGTCATCGAGCTCATGTCCCATTCTTCTTCGAAGTACACCCTGGTAGTGC
TGAGTACAATCCTCTCCACCAGTAGTAATTGCAATGATAAACGATCGTTG
TCCCCGCATGCTGGGACGTAAACTCGACGGTGTGACAAGAATATTGCAGA
AATCGATAGATGTTACAGACTGCCAATTTCCACCCAATGGGTGACCTATT
TTGTTTCACGGCCTTCGGTTGTGAACCACACGATGTGCAACTCCCTAGTG
ACCGCTGTGCGGCACATGGGTCCCCCTAGTCACCCCCCGCCCATCACACC
TGGACGGAGTATGAACAACTGTGTGGCGGATGCGACGTGCAACACTGAGT
ACGAGTACCCCATCCCACCCCGCGGCTGCTATTGTTGTTCAGGCTGCATG
GAATTCCGCTACCCCAAACAAGAGCCCACCAGATCACTTGGACAGCAGCA
TTTTGAGTAGAGGTAACGCTAATGCCACCAGTGAGTTGATCAACGAATTT
CTTCTTAAAAAACTCACCCATAATTCGGGTACTAGTGAGCAGAAAATGCC
GCTTCCGCCGTTGGCTGGGGCAGCATTTCGGGGCAACTGGAGGCTATTCA
AGCGCGTGAGGCGCGAGTACACAGACCTGGGAGGGATTTGGGATAAAACG
GAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6077:4123..8575+

>mRNA_H-paniculata_contig6077.13766.1 ID=mRNA_H-paniculata_contig6077.13766.1|Name=mRNA_H-paniculata_contig6077.13766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig6077:4123..8575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTGTACATAATCACTCCGGACGACCTCGGATACAACGAATTCAGTGT
TGGCACCATGGACGCTGGGCTCAAGGCCACCAGCATTCGCGTACCTCTAT
TCGCACTCACCATTTTATCGGGCAAGAAAGAAGCCATCAAGTGGGCGGAG
AAGTACATCAATGATCACGTCGAAGACAAAACGGCGCCGCTGTACATAAT
CACTCCGGACGACCTCGGATACAACGAATTCAGTGTTGGCACCATGGACG
CTGGGCTCAAGGCCACCAGCATTCGCGTACCTCTATTCGCACTCACCATT
TTATCGGGCAAGAAAGAAGCCATCAAGTGGGCGGAGAAGTACATCAATGA
TCACGTCGAAGACAAAACGGCGGTATGGAACATTGTACGCGGCGAGGGAA
AGACCATTAGATCGTTGACGTATGCGGCATCTGCGTTGCCGACCGCTCAT
GGTGCCGGGGAGGACACATTCGACGCCGTGTACTCTGCTATGTTGAAGGT
ATGGAACATTGTACGCGGCGAGGGAAAGACCATTAGATCGTTGACGTATG
CGGCATCTGCGTTGCCGACCGCTCATGGTGCCGGGGAGGACACATTCGAC
GCCGTGTACTCTGCTATGTTGAAGGCTGCATGGAATTCCGCTACCCCAAA
CAAGAGCCCACCAGATCACTTGGACAGCAGCATTTTGAGTAGAGGTAACG
CTAATGCCACCAGTGAGTTGATCAACGAATTTCTTCTTAAAAAACTCACC
CATAATTCGGGTACTAGTGAGCAGAAAATGCCGCTTCCGCCGTTGGCTGG
GGCAGCATTTCGGGGCAACTGGAGGCTATTCAAGCGCGTGAGGCGCGAGT
ACACAGACCTGGGAGGGATTTGGGATAAAACGGAGGCTGCATGGAATTCC
GCTACCCCAAACAAGAGCCCACCAGATCACTTGGACAGCAGCATTTTGAG
TAGAGGTAACGCTAATGCCACCAGTGAGTTGATCAACGAATTTCTTCTTA
AAAAACTCACCCATAATTCGGGTACTAGTGAGCAGAAAATGCCGCTTCCG
CCGTTGGCTGGGGCAGCATTTCGGGGCAACTGGAGGCTATTCAAGCGCGT
GAGGCGCGAGTACACAGACCTGGGAGGGATTTGGGATAAAACGGAG
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