mRNA_H-paniculata_contig6077.13764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6077.13764.1
Unique NamemRNA_H-paniculata_contig6077.13764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6077.13764.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.090e-12
Identity = 67/212 (31.60%), Postives = 94/212 (44.34%), Query Frame = 3 
Query:  207 LLETKHLEDGRTLLMFAAVLGKTTAFKQVALSIRRKVGVFALVRQLRDSDAHGAPLLFQASSHSSNVECFKAACQMXXXXXXXXXXXXXXXXXXXXXXXXQMRAAA-SGSFTVFHAVEELMKMMGNQTFIKRTRDQKYREEEKYDNMRRTLLHHAAAGGCAQTLKSVSEVVKRSSIDWCATLCEE-------------DRQGVTPVMLLLGK 800
            +L  + + D R+LL +AA LGK + F+ +AL +R K+GV  LV QLR+    GAPLLFQA +     ECFKA  ++                         M  A  +GS  VF +   L+K + +       R Q        D   RTL+HHAA G   + L  V EVV R+ + W     +              DR G +P +  LG+
Sbjct:  237 VLSARDVMDRRSLLEYAAALGKASHFEDLALWLRWKLGVGGLVNQLREPGVDGAPLLFQAVNID---ECFKAVTKVLLDTLGAGGVAQQIRATDQKGMTLLMHVARFAGSVEVFSSALHLVKTLTS-------RQQGLCHLRARDAEGRTLVHHAAEGRTEEMLPKVMEVVSRADL-WVIDESDSESTDLRQYLSTRTDRHGRSPALCALGR 437
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BLAST of mRNA_H-paniculata_contig6077.13764.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.360e-11
Identity = 73/270 (27.04%), Postives = 110/270 (40.74%), Query Frame = 3 
Query:  114 RKIVEDGARNIEQELEELEKNDQRG-QLLVATLLETKHLEDGRTLLMFAAVLGKTTAFKQVALSIRRKVGVFALVRQLRDSDAHGAPLLFQASSHSSNVECFKAACQMXXXXXXXXXXXXXXXXXXXXXXXXQMRAAASGSFTVFHAVEELMKMMGNQTFI-------------------------KRTRDQKYREEEK-------------YDNMRRTLLHHAAAGGCAQTLKSVSEVVKRSSIDWCATLCEEDRQGVTPVMLLLGKSY 806
            R+ + D  +++E+ LEE++K    G + L+   L++K  EDG+ +L++AA  G  T    +   IR +VG+ ALV++LR++D  G PLLF A+S      CF+ A  +                         M AA S     F  V +  +       +                         +R  D   +  EK              D    T LHHAA  G ++ L    EVVK     W A L   DR G TP+ML+L  ++
Sbjct:   12 RRCIRDPEKDVEKGLEEVQKEVGEGLESLLDEALQSKWPEDGQNVLLYAAAQGNQTWLLGLVDLIRSRVGIHALVKELRETDIDGVPLLFHAASSRRKHCCFRIAYDLVFTVLGKGGVIEQFEALDGLGRGILMHAARSNHVDTFKDVFDKCRKAAESVRLHDQSNAVANDGRIEIPEVPLYGFRGERPSDSTTQTPEKSSNSLLLREVLGTVDRKGMTCLHHAAEAGSSEVL---CEVVKECGSHW-ADLGASDRSGRTPIMLVLRNAF 277
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BLAST of mRNA_H-paniculata_contig6077.13764.1 vs. uniprot
Match: A0A6H5K219_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K219_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.710e-7
Identity = 58/195 (29.74%), Postives = 84/195 (43.08%), Query Frame = 3 
Query:  207 LLETKHLEDGRTLLMFAAVLGKTTAFKQVALSIRRKVGVFALVRQLRDSDAHGAPLLFQASSHSSNVECFKAACQMXXXXXXXXXXXXXXXXXXXXXXXX-------QMRAA-------------ASGSFTVFHAVEELMKMMGNQTFIKRTRDQKYREEEKYDNMRRTLLHHAAAGGCAQTLKSVSEVVKRSSI 731
            +L  + + D R++L +AA LGK + F+ +A  +R K+GV +LV QLR+    GAPLLFQA +     ECFKA  +                                Q+RA              ++GS  VF +   L+K + +       R Q        D   RTL HHAA G   + L  V EVV ++ +
Sbjct:  193 VLSARDVMDRRSILEYAAALGKASHFEDLARWLRWKLGVGSLVNQLREPGVDGAPLLFQAVNVD---ECFKAVTKASPLGKPPCRASRTSNYHRVLLDTLGAGGVAQQIRATDQKGMTLLMHVARSAGSVEVFSSALHLVKTLSS-------RQQGLCHLRARDAEGRTLAHHAAEGRTEEMLPKVMEVVSQADL 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6077.13764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMR2_ECTSI4.090e-1231.60Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LHA0_ECTSI1.360e-1127.04Transient Receptor Potential Channel. Partial sequ... [more]
A0A6H5K219_9PHAE1.710e-729.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6077contigH-paniculata_contig6077:1357..3215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D8LHA0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_005210.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size836
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6077.13764.1prot_H-paniculata_contig6077.13764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6077 1362..3215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.7782125-UTR-H-paniculata_contig6077:1356..13611622930678.7782125-UTR-H-paniculata_contig6077:1356..1361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6077 1357..1361 +
1691481402.670824-UTR-H-paniculata_contig6077:1356..13611691481402.670824-UTR-H-paniculata_contig6077:1356..1361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6077 1357..1361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.7988896-CDS-H-paniculata_contig6077:1361..14421622930678.7988896-CDS-H-paniculata_contig6077:1361..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 1362..1442 +
1691481402.6831815-CDS-H-paniculata_contig6077:1361..14421691481402.6831815-CDS-H-paniculata_contig6077:1361..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 1362..1442 +
1622930678.8418624-CDS-H-paniculata_contig6077:1855..20831622930678.8418624-CDS-H-paniculata_contig6077:1855..2083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 1856..2083 +
1691481402.69364-CDS-H-paniculata_contig6077:1855..20831691481402.69364-CDS-H-paniculata_contig6077:1855..2083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 1856..2083 +
1622930678.8578377-CDS-H-paniculata_contig6077:2693..32151622930678.8578377-CDS-H-paniculata_contig6077:2693..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 2694..3215 +
1691481402.703917-CDS-H-paniculata_contig6077:2693..32151691481402.703917-CDS-H-paniculata_contig6077:2693..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 2694..3215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6077.13764.1

>prot_H-paniculata_contig6077.13764.1 ID=prot_H-paniculata_contig6077.13764.1|Name=mRNA_H-paniculata_contig6077.13764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MASGNFMRKREGSMLGSFSAIMSVSKRVLETELKKARKIVEDGARNIEQE
LEELEKNDQRGQLLVATLLETKHLEDGRTLLMFAAVLGKTTAFKQVALSI
RRKVGVFALVRQLRDSDAHGAPLLFQASSHSSNVECFKAACQMLESTVGV
GGLMEQLRAVDRKGKSLQMRAAASGSFTVFHAVEELMKMMGNQTFIKRTR
DQKYREEEKYDNMRRTLLHHAAAGGCAQTLKSVSEVVKRSSIDWCATLCE
EDRQGVTPVMLLLGKSYPGGDQTGILQ
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mRNA from alignment at H-paniculata_contig6077:1357..3215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6077.13764.1 ID=mRNA_H-paniculata_contig6077.13764.1|Name=mRNA_H-paniculata_contig6077.13764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1859bp|location=Sequence derived from alignment at H-paniculata_contig6077:1357..3215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATATGGCGAGTGGTAATTTTATGCGCAAGAGAGAGGGAAGCATGCTT
GGATCGTTCTCTGCCATCATGAGCGTCAGCAAACGAGTGAGCACGCATCG
CTGTTGTAGCAGACTTCGTCGATGGGTGATACGATTGCGCATAAGAGTTT
GCCATCCGTACGTAGTTTGGACGTGGCCTCGAATCAATGGGAGGGGCACG
GAGTTGGAAGGCAAAATCTACAACGATTTCTTCATCGATGATGTTGCTTG
TGATTTGATCACATCTGCTGGTAGCAGTCAAACCTACTTGATGTGCAGTC
TATAAATTTGAGTTTGTTCTTTCAAAAACAGCCCCCCTGTTGTATCACAG
TTACGTTGCGATCTGAGTGATTCCTAGGCTGTTGGGGAGGTCGGGTAGCC
CCCATTCCCGTTCGCGAACGACTATTACGGGGTAACCCTTGAGGGCGTTC
GTTGTCGTCGTACTCTCCTGTAATGTGCCTGTGGTTTTGGACGACGCAGG
TATTGGAAACCGAGCTAAAGAAAGCCCGCAAAATTGTCGAGGACGGCGCG
AGGAACATCGAGCAAGAGCTCGAAGAACTAGAAAAAAATGACCAGAGAGG
GCAGTTGTTGGTGGCTACCCTTCTCGAAACGAAGCACTTGGAAGACGGTC
GGACCCTCCTCATGTTTGCTGCCGTGTTGGGCAAGACAACGGCATTCAAG
CAGGTCGCCCTCAGCATACGACGGAAGGTGTGATGCTTTGCCATCGATCG
GGCAAAATTATGGTGCTGTATTATTATACAGTGGCTGGTAGTTCGTTGGC
TTGGACTTAGCGTACACATGTTATCGTACTGTAGAACGCGATGGAGTTGG
TTGGCCCATGCCATGGACTATTCGTGCAGCGGGTTGGGTGCTCATGCATT
TTTAATTTCTCCTCTACGAGGGACTCATAAAATATTCTCATGGAGTCTAT
GCCCCCCTTTTCTCTCCCTCTTGATTTCAGCCTTTTGCATCTTTTCGCTA
AGCAGTATAGCAGATTTTTACACTATTTTCACACGAGTGGCGTCTCGTTT
GGGCAAGTGACATCGGTAACATCCCCGAAACGCAGGCTACCAGGGTGTGC
AGAAGTGGAACAGATGAAGACATTCTAAGCCCCTTGCTGAATTGCTTGAA
TACAATATAGCGTGCGGTAGAGTCTTTCCATCAAAGGGGTGTAGTGTGCG
TGTATGTCCAAAAAAGGGGATATCGACGAGATGCCCAGCTTCTTCTGTAG
TTTGGGAGCTAATGACAGCTTTTAGACGCAGCTTCCTGTGACAACACGAT
ACGAGCCTTTTCATCCCCTCCATTGTTGACAAAATAGGTTGGCGTGTTCG
CCCTAGTGCGGCAACTACGGGACTCCGACGCCCATGGCGCCCCTCTTTTG
TTCCAAGCCTCGTCTCACAGCAGCAACGTTGAATGCTTTAAAGCTGCTTG
TCAGATGCTGGAGAGCACCGTTGGTGTTGGTGGGCTCATGGAACAGCTGC
GAGCAGTAGACAGAAAAGGAAAAAGTCTGCAGATGCGCGCTGCGGCGAGC
GGAAGCTTCACCGTTTTCCACGCTGTCGAGGAGCTAATGAAGATGATGGG
GAACCAGACGTTCATCAAGCGGACGAGGGACCAGAAATACAGAGAGGAGG
AGAAATACGACAACATGCGCAGGACGTTATTACATCATGCCGCCGCGGGT
GGTTGCGCTCAGACCCTCAAGAGTGTATCGGAAGTGGTGAAACGATCCTC
CATCGACTGGTGCGCGACCTTGTGCGAAGAGGACAGGCAGGGTGTGACTC
CCGTGATGTTGCTCTTGGGAAAGAGCTACCCTGGTGGCGATCAAACGGGC
ATTCTCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6077:1357..3215+

>mRNA_H-paniculata_contig6077.13764.1 ID=mRNA_H-paniculata_contig6077.13764.1|Name=mRNA_H-paniculata_contig6077.13764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig6077:1357..3215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGTGGTAATTTTATGCGCAAGAGAGAGGGAAGCATGCTTGGATC
GTTCTCTGCCATCATGAGCGTCAGCAAACGAATGGCGAGTGGTAATTTTA
TGCGCAAGAGAGAGGGAAGCATGCTTGGATCGTTCTCTGCCATCATGAGC
GTCAGCAAACGAGTATTGGAAACCGAGCTAAAGAAAGCCCGCAAAATTGT
CGAGGACGGCGCGAGGAACATCGAGCAAGAGCTCGAAGAACTAGAAAAAA
ATGACCAGAGAGGGCAGTTGTTGGTGGCTACCCTTCTCGAAACGAAGCAC
TTGGAAGACGGTCGGACCCTCCTCATGTTTGCTGCCGTGTTGGGCAAGAC
AACGGCATTCAAGCAGGTCGCCCTCAGCATACGACGGAAGGTATTGGAAA
CCGAGCTAAAGAAAGCCCGCAAAATTGTCGAGGACGGCGCGAGGAACATC
GAGCAAGAGCTCGAAGAACTAGAAAAAAATGACCAGAGAGGGCAGTTGTT
GGTGGCTACCCTTCTCGAAACGAAGCACTTGGAAGACGGTCGGACCCTCC
TCATGTTTGCTGCCGTGTTGGGCAAGACAACGGCATTCAAGCAGGTCGCC
CTCAGCATACGACGGAAGGTTGGCGTGTTCGCCCTAGTGCGGCAACTACG
GGACTCCGACGCCCATGGCGCCCCTCTTTTGTTCCAAGCCTCGTCTCACA
GCAGCAACGTTGAATGCTTTAAAGCTGCTTGTCAGATGCTGGAGAGCACC
GTTGGTGTTGGTGGGCTCATGGAACAGCTGCGAGCAGTAGACAGAAAAGG
AAAAAGTCTGCAGATGCGCGCTGCGGCGAGCGGAAGCTTCACCGTTTTCC
ACGCTGTCGAGGAGCTAATGAAGATGATGGGGAACCAGACGTTCATCAAG
CGGACGAGGGACCAGAAATACAGAGAGGAGGAGAAATACGACAACATGCG
CAGGACGTTATTACATCATGCCGCCGCGGGTGGTTGCGCTCAGACCCTCA
AGAGTGTATCGGAAGTGGTGAAACGATCCTCCATCGACTGGTGCGCGACC
TTGTGCGAAGAGGACAGGCAGGGTGTGACTCCCGTGATGTTGCTCTTGGG
AAAGAGCTACCCTGGTGGCGATCAAACGGGCATTCTCCAGGTTGGCGTGT
TCGCCCTAGTGCGGCAACTACGGGACTCCGACGCCCATGGCGCCCCTCTT
TTGTTCCAAGCCTCGTCTCACAGCAGCAACGTTGAATGCTTTAAAGCTGC
TTGTCAGATGCTGGAGAGCACCGTTGGTGTTGGTGGGCTCATGGAACAGC
TGCGAGCAGTAGACAGAAAAGGAAAAAGTCTGCAGATGCGCGCTGCGGCG
AGCGGAAGCTTCACCGTTTTCCACGCTGTCGAGGAGCTAATGAAGATGAT
GGGGAACCAGACGTTCATCAAGCGGACGAGGGACCAGAAATACAGAGAGG
AGGAGAAATACGACAACATGCGCAGGACGTTATTACATCATGCCGCCGCG
GGTGGTTGCGCTCAGACCCTCAAGAGTGTATCGGAAGTGGTGAAACGATC
CTCCATCGACTGGTGCGCGACCTTGTGCGAAGAGGACAGGCAGGGTGTGA
CTCCCGTGATGTTGCTCTTGGGAAAGAGCTACCCTGGTGGCGATCAAACG
GGCATTCTCCAG
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