mRNA_H-paniculata_contig6077.13765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6077.13765.1
Unique NamemRNA_H-paniculata_contig6077.13765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6077.13765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6077contigH-paniculata_contig6077:3332..4098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6077.13765.1prot_H-paniculata_contig6077.13765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6077 3342..4098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.68895-UTR-H-paniculata_contig6077:3331..33411622930678.68895-UTR-H-paniculata_contig6077:3331..3341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6077 3332..3341 +
1691481402.6405118-UTR-H-paniculata_contig6077:3331..33411691481402.6405118-UTR-H-paniculata_contig6077:3331..3341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6077 3332..3341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.7024267-CDS-H-paniculata_contig6077:3341..36021622930678.7024267-CDS-H-paniculata_contig6077:3341..3602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 3342..3602 +
1691481402.6502051-CDS-H-paniculata_contig6077:3341..36021691481402.6502051-CDS-H-paniculata_contig6077:3341..3602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 3342..3602 +
1622930678.726143-CDS-H-paniculata_contig6077:4062..40981622930678.726143-CDS-H-paniculata_contig6077:4062..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 4063..4098 +
1691481402.6599634-CDS-H-paniculata_contig6077:4062..40981691481402.6599634-CDS-H-paniculata_contig6077:4062..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6077 4063..4098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6077.13765.1

>prot_H-paniculata_contig6077.13765.1 ID=prot_H-paniculata_contig6077.13765.1|Name=mRNA_H-paniculata_contig6077.13765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MLTLAAAAAAEEKKKLDSPREELIRILLDRFAPVQDEADEQISQDEREIR
AVGKALCLDKREKSYVYQLVAQSALGGHSKVLEGVMRAVEEWCQTSNDQ
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mRNA from alignment at H-paniculata_contig6077:3332..4098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6077.13765.1 ID=mRNA_H-paniculata_contig6077.13765.1|Name=mRNA_H-paniculata_contig6077.13765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=767bp|location=Sequence derived from alignment at H-paniculata_contig6077:3332..4098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAACCTGATGCTCACACTTGCAGCTGCAGCTGCAGCTGAAGAGAAGA
AAAAGCTCGACTCCCCGCGCGAGGAGCTCATACGCATTTTGCTCGATCGA
TTTGCCCCCGTACAAGATGAAGCCGATGAACAGATTAGTCAAGACGAAAG
GGAAATCCGTGCGGTAGGGAAGGCACTTTGCCTCGATAAGCGTGAAAAAT
CGTACGTATATCAGCTCGTGGCACAGTCGGCTCTTGGCGGTCATAGCAAG
GTCCTGGAAGGCGTCATGCGGGCGAGTGGCGCTGGTTTGCCAGTTAACTG
GTAGTCGTGATTCACATTTCAAGGCCTTGGCTTACGTAGAGGAAAATCGG
CCGCTTCTGCTACAGTGCGTAGACCCTGGCTGCCGAGATTAAATGCCTTC
CTAGTTTGGTAGCATTATGAGGCACGCGGTGGTCTTGTTTATTGCTTCCG
TACGTCTTATCCACCAATAATATTAACGCTTTACGTCATCCGAGGATTTA
GGGGTGCAGGGAGGGTTGCGCAGTTCAAAGCTACGCAAGAGTGTATCTAA
GAAGATTTACGGATGCTCTTTTCCTTTGCGAGGGTGGTCGGTGCGTCGTT
TCCCTCTGGTGGGATTCTTGGAACGGACCTTTTTATTCTACGAAACCTAC
GTGGCAATCGACCGATAAATCTAGTTGTATTCCCCGTATTGGTGAATCGA
CACGTGCACGTTGAATCACCAACCGGTACAGGCCGTCGAAGAGTGGTGCC
AAACGAGCAACGATCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6077:3332..4098+

>mRNA_H-paniculata_contig6077.13765.1 ID=mRNA_H-paniculata_contig6077.13765.1|Name=mRNA_H-paniculata_contig6077.13765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig6077:3332..4098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACACTTGCAGCTGCAGCTGCAGCTGAAGAGAAGAAAAAGCTCGA
CTCCCCGCGCGAGGAGCTCATACGCATTTTGCTCGATCGATTTGCCCCCG
TACAAGATGAAGCCGATGAACAGATTAGTCAAGACGAAAGGGAAATCCGT
GCGGTAGGGAAGGCACTTTGCCTCGATAAGCGTGAAAAATCGTACGTATA
TCAGCTCGTGGCACAGTCGGCTCTTGGCGGTCATAGCAAGGTCCTGGAAG
GCGTCATGCGGATGCTCACACTTGCAGCTGCAGCTGCAGCTGAAGAGAAG
AAAAAGCTCGACTCCCCGCGCGAGGAGCTCATACGCATTTTGCTCGATCG
ATTTGCCCCCGTACAAGATGAAGCCGATGAACAGATTAGTCAAGACGAAA
GGGAAATCCGTGCGGTAGGGAAGGCACTTTGCCTCGATAAGCGTGAAAAA
TCGTACGTATATCAGCTCGTGGCACAGTCGGCTCTTGGCGGTCATAGCAA
GGTCCTGGAAGGCGTCATGCGGGCCGTCGAAGAGTGGTGCCAAACGAGCA
ACGATCAAGCCGTCGAAGAGTGGTGCCAAACGAGCAACGATCAA
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