mRNA_H-paniculata_contig60753.13763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60753.13763.1
Unique NamemRNA_H-paniculata_contig60753.13763.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A0J7K966_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K966_LASNI)

HSP 1 Score: 92.0 bits (227), Expect = 7.850e-22
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLRN 294
            +AA +A KE ++LR LL S+G    G TT+  DN+ AI L K  + H RTKHI VR+H IRE  ++G + + YV + DQLADILTK LSK  F RLR+
Sbjct:    9 IAASDATKELIWLRHLLESMGVVTDGPTTMKVDNQGAIKLIKNPEYHKRTKHIEVRYHFIREKHEDGQIEIVYVPSSDQLADILTKALSKEPFIRLRD 106          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A0J7KCC4_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KCC4_LASNI)

HSP 1 Score: 92.0 bits (227), Expect = 8.730e-22
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLR 291
            VAA  A KE V+LR LL  IG+ C  +T L+ DN+SAI ++K  + H R KHI VR+H IRE ++  ++ + YV +  Q ADI TK L K  F+RLR
Sbjct:   18 VAASSAAKEAVWLRNLLDEIGYRCDSTTVLYVDNQSAIKIAKNPEFHERIKHIDVRYHHIREIVENAVIQVLYVPSEMQKADIFTKALPKESFRRLR 114          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 90.1 bits (222), Expect = 1.470e-20
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLR 291
            VA  EA +E V+L+GLL  +G   +  T L+ DN+ AI L++   TH RTKHI +RWH IRE I++G++ L YV T  Q+ADI TK L     + LR
Sbjct:   64 VAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKALLPAPHRSLR 160          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 94.4 bits (233), Expect = 2.280e-20
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQR 285
            +AA  A KE  +LR  LG IG  C+ +T L  DN+SA+ +++    H RTKHI VR+H +RE ++ G ++L+YV TGDQ+AD+LTKGL K +  +
Sbjct: 1033 IAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A427YPN6_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YPN6_9TREE)

HSP 1 Score: 90.1 bits (222), Expect = 3.010e-20
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLR 291
            VA  EA +E V+L+GLL  +G   +  T L+ DN+ AI L++   TH RTKHI +RWH IRE I++G++ L YV T  Q+ADI TK L     + LR
Sbjct:   27 VAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKALLPAPHRSLR 123          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A7D9LAD0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LAD0_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 5.830e-20
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLR 291
            +A   A +E V+LR L+  +   C  +TT++EDN+ AI +S+    H RTKHI +++H IRE  Q+G + LKY  T + LADILTK LSK QF+ LR
Sbjct:   86 IALRFATQEAVWLRQLMKDLQMDCTTATTIYEDNQGAIAMSRNPVLHKRTKHIDIKYHFIREKTQDGTIELKYCPTNEMLADILTKPLSKGQFEYLR 182          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A8B9AF78_PHODC (secreted RxLR effector protein 161-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AF78_PHODC)

HSP 1 Score: 89.0 bits (219), Expect = 1.860e-19
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLRNLL 300
            VAA +A  + V+LR +L +IG      T LF DNKSAI + K   +H RTKHI +++H IRE I+ G + LKY ++ +QLADILTK L K +F  LRNL+
Sbjct:  145 VAAAKATSQAVWLRRILENIGERREEETILFCDNKSAIAIGKNPISHDRTKHIAIKYHFIREAIENGEIQLKYCKSEEQLADILTKALPKNKFCYLRNLI 244          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A7R8ULQ3_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8ULQ3_HERIL)

HSP 1 Score: 87.0 bits (214), Expect = 3.790e-19
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLRN 294
            VAA  A KE ++LR LL  +G     ST L  +N+SAI L K ++ H RTKHI ++ H +RE ++ G +S++YV T  QLADI TK L K QFQ L N
Sbjct:   61 VAAAAAAKEAIWLRKLLNDLGCLPTTSTVLRVNNQSAIRLIKNAEFHKRTKHIDIKHHYVRETVESGEISVEYVPTYQQLADIFTKTLPKTQFQHLCN 158          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203)

HSP 1 Score: 87.8 bits (216), Expect = 5.980e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLRNL 297
            +A   A +E +++R LL +I   C   T +FEDN+S I+L+K    H R KHI +R+H  RE ++   ++L Y Q+ D +AD+LTKGLSKV+F +L NL
Sbjct:  152 MALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKFVKLLNL 250          
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Match: A0A427Y2R1_9TREE (Integrase catalytic domain-containing protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427Y2R1_9TREE)

HSP 1 Score: 90.1 bits (222), Expect = 6.910e-19
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRTKHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLR 291
            VA  EA +E V+L+GLL  +G   +  T L+ DN+ AI L++   TH RTKHI +RWH IRE I++G++ L YV T  Q+ADI TK L     + LR
Sbjct:  790 VAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKALLPAPHRSLR 886          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60753.13763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K966_LASNI7.850e-2252.04Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A0J7KCC4_LASNI8.730e-2248.45Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A427XXX1_9TREE1.470e-2047.42Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A4Y9ZY34_9AGAM2.280e-2047.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A427YPN6_9TREE3.010e-2047.42Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A7D9LAD0_PARCT5.830e-2047.42Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8B9AF78_PHODC1.860e-1950.00secreted RxLR effector protein 161-like n=1 Tax=Ph... [more]
A0A7R8ULQ3_HERIL3.790e-1948.98Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
UPI001AE8F2035.980e-1944.44secreted RxLR effector protein 161-like n=1 Tax=Le... [more]
A0A427Y2R1_9TREE6.910e-1947.42Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60753contigH-paniculata_contig60753:358..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score88.2
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog7425.NV19274-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.63978-CDS-H-paniculata_contig60753:357..6631622930678.63978-CDS-H-paniculata_contig60753:357..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60753 358..663 -
1691481402.6298707-CDS-H-paniculata_contig60753:357..6631691481402.6298707-CDS-H-paniculata_contig60753:357..663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60753 358..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60753.13763.1prot_H-paniculata_contig60753.13763.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60753 358..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60753.13763.1

>prot_H-paniculata_contig60753.13763.1 ID=prot_H-paniculata_contig60753.13763.1|Name=mRNA_H-paniculata_contig60753.13763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
VAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSDTHCRT
KHIGVRWHGIREWIQEGILSLKYVQTGDQLADILTKGLSKVQFQRLRNLL
M*
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mRNA from alignment at H-paniculata_contig60753:358..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60753.13763.1 ID=mRNA_H-paniculata_contig60753.13763.1|Name=mRNA_H-paniculata_contig60753.13763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig60753:358..663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGGGTTACT AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACA ACAAATCAGCTATTAATCTCAGTAAGGGATCTGACACACACTGCAGGACA AAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCAGGAAGG AATATTGTCGTTGAAATATGTGCAGACCGGCGATCAACTTGCTGACATTT TAACGAAAGGACTAAGCAAAGTACAGTTTCAGAGACTGAGAAATTTACTC ATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig60753:358..663-

>mRNA_H-paniculata_contig60753.13763.1 ID=mRNA_H-paniculata_contig60753.13763.1|Name=mRNA_H-paniculata_contig60753.13763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig60753:358..663- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGGGTTACT
AGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACA
ACAAATCAGCTATTAATCTCAGTAAGGGATCTGACACACACTGCAGGACA
AAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCAGGAAGG
AATATTGTCGTTGAAATATGTGCAGACCGGCGATCAACTTGCTGACATTT
TAACGAAAGGACTAAGCAAAGTACAGTTTCAGAGACTGAGAAATTTACTC
ATGTGAGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGG
GTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTG
AGGACAACAAATCAGCTATTAATCTCAGTAAGGGATCTGACACACACTGC
AGGACAAAGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCA
GGAAGGAATATTGTCGTTGAAATATGTGCAGACCGGCGATCAACTTGCTG
ACATTTTAACGAAAGGACTAAGCAAAGTACAGTTTCAGAGACTGAGAAAT
TTACTCATGTGA
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