prot_H-paniculata_contig60733.13761.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig60733.13761.1
Unique Nameprot_H-paniculata_contig60733.13761.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length132
Homology
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.760e-29
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D E +P    DV  SKC+ FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+   F+  PSAA +KTV+AVA ++   L H+D+
Sbjct:  102 SDVEAVPMTYKDVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEKGKNLAHWDV 221          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.010e-26
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  102 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 221          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.990e-26
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFH 129
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+  + +  PSAA +KTV+AVA  +  +L H
Sbjct:  116 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVATVKGKKLAH 232          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.140e-26
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    2 VTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +T  +  EP   +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G ++ FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:    1 MTSPIGHEP---SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDV 129          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.530e-25
Identity = 56/132 (42.42%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    2 VTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +T  +  +P   +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  344 ITSPIGQKP---SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 472          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.990e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  452 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDV 571          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.090e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D E +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  494 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 613          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JI90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI90_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.330e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D E +P   D+V  SK + FWE A+++E GG+ KT TFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  451 SDVEAVPMTYDNVMCSKYKVFWEAAMKKETGGHDKTRTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSVCPSAASIKTVIAVATEKGKKLAHWDV 570          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 9.760e-25
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 0
Query:   14 NDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            +D + +P    DV  SK + FWE A+++E+ G+ KTGTFT V +  EG+K +  +++FS+KTN+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  642 SDVKAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLGHWDV 761          
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.310e-24
Identity = 54/121 (44.63%), Postives = 80/121 (66.12%), Query Frame = 0
Query:   13 LNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTGTFTVVND-SEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDYDEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI 132
            L+D + +P    DV  SK   FWE AI+ E+ G+ KTGTFT V +  EG+K +  +++FS+K N+ G +V FKAR+VA G +QI  ID+    +  PSAA +KTV+AVA ++  +L H+D+
Sbjct:  258 LSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDV 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60733.13761.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNP9_9PHAE9.760e-2946.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE1.010e-2645.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE7.990e-2645.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE9.140e-2642.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.530e-2542.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE1.990e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE2.090e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI90_9PHAE3.330e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE9.760e-2544.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE1.310e-2444.63Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 51..132
e-value: 2.8E-17
score: 63.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 34..127
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 34..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60733contigH-paniculata_contig60733:540..935 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60733.13761.1mRNA_H-paniculata_contig60733.13761.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig60733 540..935 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig60733.13761.1 ID=prot_H-paniculata_contig60733.13761.1|Name=mRNA_H-paniculata_contig60733.13761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MVTGELSFEPFLLNDAEPLPRNIDDVQRSKCRPFWEEAIQREMGGYAKTG
TFTVVNDSEGKKPLRGQFIFSYKTNDIGNVVKFKARLVADGRTQIQDIDY
DEVFAPTPSAAVVKTVLAVAVQEDLQLFHFDI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like