mRNA_H-paniculata_contig60720.13759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60720.13759.1
Unique NamemRNA_H-paniculata_contig60720.13759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60720.13759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60720contigH-paniculata_contig60720:49..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.2624905-CDS-H-paniculata_contig60720:48..5191622930678.2624905-CDS-H-paniculata_contig60720:48..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60720 49..519 +
1691481402.4514012-CDS-H-paniculata_contig60720:48..5191691481402.4514012-CDS-H-paniculata_contig60720:48..519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60720 49..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60720.13759.1prot_H-paniculata_contig60720.13759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60720 49..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60720.13759.1

>prot_H-paniculata_contig60720.13759.1 ID=prot_H-paniculata_contig60720.13759.1|Name=mRNA_H-paniculata_contig60720.13759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
RNAQKAWTTLITTCKGMTLKIVQSTESPSEAWRKLQKHYRASGLKEKLRL
LSEFNSLRMEPGEGSTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNELS
PEYDIERRMIESSDDTPNRARIETIIAKQCNRLQQQKAETGEKALAVTMK
GTTETC*
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mRNA from alignment at H-paniculata_contig60720:49..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60720.13759.1 ID=mRNA_H-paniculata_contig60720.13759.1|Name=mRNA_H-paniculata_contig60720.13759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig60720:49..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAACGCGCAAAAAGCGTGGACCACGCTAATCACGACCTGCAAAGGCAT
GACGTTGAAGATCGTCCAGAGCACCGAGTCACCGAGTGAGGCATGGAGGA
AGCTCCAAAAGCACTACCGCGCTAGCGGTCTCAAAGAGAAGTTACGTCTG
CTGAGTGAATTTAACTCCCTCAGGATGGAGCCCGGGGAAGGATCCACAAA
ATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGA
GGACCGTCGACGAAGATGACAGGAATCTCGCGATAGTGAACGAGCTATCA
CCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACGCC
AAATAGAGCGCGCATCGAAACGATCATCGCAAAACAGTGTAACAGGCTTC
AGCAGCAGAAAGCCGAGACCGGAGAAAAGGCACTGGCGGTCACAATGAAA
GGTACAACAGAAACTTGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig60720:49..519+

>mRNA_H-paniculata_contig60720.13759.1 ID=mRNA_H-paniculata_contig60720.13759.1|Name=mRNA_H-paniculata_contig60720.13759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig60720:49..519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAACGCGCAAAAAGCGTGGACCACGCTAATCACGACCTGCAAAGGCAT
GACGTTGAAGATCGTCCAGAGCACCGAGTCACCGAGTGAGGCATGGAGGA
AGCTCCAAAAGCACTACCGCGCTAGCGGTCTCAAAGAGAAGTTACGTCTG
CTGAGTGAATTTAACTCCCTCAGGATGGAGCCCGGGGAAGGATCCACAAA
ATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGA
GGACCGTCGACGAAGATGACAGGAATCTCGCGATAGTGAACGAGCTATCA
CCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACGCC
AAATAGAGCGCGCATCGAAACGATCATCGCAAAACAGTGTAACAGGCTTC
AGCAGCAGAAAGCCGAGACCGGAGAAAAGGCACTGGCGGTCACAATGAAA
GGTACAACAGAAACTTGCTAGCGGAACGCGCAAAAAGCGTGGACCACGCT
AATCACGACCTGCAAAGGCATGACGTTGAAGATCGTCCAGAGCACCGAGT
CACCGAGTGAGGCATGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGT
CTCAAAGAGAAGTTACGTCTGCTGAGTGAATTTAACTCCCTCAGGATGGA
GCCCGGGGAAGGATCCACAAAATTCCTTTTGCGGGTGGACCGGGTCGCCA
ATGACTTGGAGCGGCTTGGGAGGACCGTCGACGAAGATGACAGGAATCTC
GCGATAGTGAACGAGCTATCACCAGAGTATGACATTGAGAGGAGAATGAT
CGAGAGCAGCGATGACACGCCAAATAGAGCGCGCATCGAAACGATCATCG
CAAAACAGTGTAACAGGCTTCAGCAGCAGAAAGCCGAGACCGGAGAAAAG
GCACTGGCGGTCACAATGAAAGGTACAACAGAAACTTGCTAG
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