mRNA_H-paniculata_contig60701.13758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig60701.13758.1
Unique NamemRNA_H-paniculata_contig60701.13758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A8J9RII3_9CHLO (Uncharacterized protein n=2 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RII3_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 1.950e-32
Identity = 84/241 (34.85%), Postives = 121/241 (50.21%), Query Frame = 1
Query:   19 NIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            +II+K  DKNLG  +MGR+WY+ EC RQL D   Y         L+  ++ +   + + ++LH +   +K     N +   K++ H      ++P FYI+PK+HK    GRPI A     TTP S      L P++ +L TVLKD+  LI   + + F   +   L TADV SLY S+ V   +       +E             I+  + FVL N Y+ F+   + Q KGLAMGTP AP
Sbjct:  116 DIIVKPADKNLGLTLMGRDWYMQECYRQLSDSEVY---------LELAEMAFDAEEIKAKALHCVTAMDKLGLKANEK---KWLEHYIGESSSVPAFYIMPKLHKEPVKGRPIVASCGWCTTPLSQWCANTLAPIVAQLPTVLKDTADLISRLKDVRFSADANVLLSTADVESLYTSIPVGDAVEALAQTLREKRVGEKEAAC---IKLAVKFVLMNNYLTFDGKCYKQIKGLAMGTPLAP 341          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: M7WJ66_RHOT1 (Reverse transcriptase (Fragment) n=2 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WJ66_RHOT1)

HSP 1 Score: 123 bits (309), Expect = 9.160e-29
Identity = 76/245 (31.02%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    7 LVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            L E + ++K  DKNLG  I+ ++WYI E +RQL D +TY  + T   I K  ++    ++ E  S  +   ++ +K       + K++ +       +P F+ LPK+HK    GRPI   ++  T+  S  +   LQP++     +L+DS+ L++E   +         L+TAD+ S+Y +L   + I       +EHY +     I +FI    +FVL N Y+ F+D ++ Q  G AMGT  AP
Sbjct:   55 LKENDYLVKPADKNLGLIILPKQWYIDEGIRQLSDTSTYKVVHTVEYIDKLHQL--ADYRKEFISYWLTRSNDVNKLLTGKRGLTKFLKYPLIADIILPAFHHLPKVHKTPLKGRPIVPSYAWITSNLSRYIDSLLQPLVRXXXXILRDSKHLLRELAKLQLPLHEEIWLITADIQSMYTNLPTTEGIDIMNWLGREHYQSK---DIGNFIGEATSFVLENNYLSFQDQVYHQTDGTAMGTSMAP 294          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: UPI00109BA0B3 (uncharacterized protein LOC114576718 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BA0B3)

HSP 1 Score: 111 bits (278), Expect = 2.360e-24
Identity = 86/247 (34.82%), Postives = 134/247 (54.25%), Query Frame = 1
Query:    1 QALVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERIL-NFVLNNGYVQFEDSIFLQHKGLAMGTPSA 738
            Q   ++++ + +TDKNLG A++  +W  +E L+QL D  +Y+ +ST          ++G+ + ++ +    L S   K+  +    LK++  +Y +     KFYI+PKIHK   VGRPIAA HS  T P S  +   ++P L K+ TVL+DS  LIQ  E I   ++    LVTADV+SLYP++++++ +   L        A   P +  F   +  N VL     +F + IF Q  G+AMGTP A
Sbjct:  131 QIKCDESVKVLATDKNLGPALVSTDWVKTETLKQLNDSQSYSIVSTQ---------EWGLRRRQVIATRDKLLSTFKKFVPSNA--LKFLR-SYDHFTDPAKFYIIPKIHKNPMVGRPIAASHSYITRPLSIFVDEXVKPRL-KMPTVLRDSGELIQALESIRLPSQCF--LVTADVISLYPNVDIKKAL-IALDLLLREAKAPETPLLIQFARLVFENNVLKT---EFSEEIFHQIYGIAMGTPFA 358          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A074RDK1_9AGAM (Reverse transcriptase n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074RDK1_9AGAM)

HSP 1 Score: 105 bits (262), Expect = 2.430e-22
Identity = 71/254 (27.95%), Postives = 129/254 (50.79%), Query Frame = 1
Query:    7 LVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHF--DTRSTWTLVTADVVSLYPSLN-------VQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            LV+ N+I+  +DKNLGCA++ +EW++ +    L +P +Y  IS +  I            +E   + + L  +K+   I  E +LK          A P+FYI+PKIHK    GRPI   HS   +P + L+   L+P++++   +++ S+  IQ    I F  + R+   +V  D+ + YP++        V++++ +    ++E++G+        F E  L+   +   ++F+D  ++Q  GL+MG   AP
Sbjct:   56 LVDHNLILVPSDKNLGCALITKEWFLEQAYAHLANPNSYRKISETEAIEVI---------NEAARMSLALAGHKYVL-IKDENVLK----------ATPRFYIIPKIHKSPWKGRPIVPAHSAVHSPAAKLVSMMLKPLVNRQPYIIRGSKEFIQSISAIRFYKEERNRIFIVGGDIEAYYPNVPKGKASQIVKEMMDDDPRQSEENFGS--------FFEECLDVANSTVVMRFQDDWYVQTDGLSMGVAHAP 281          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A179EVJ5_METCM (Reverse transcriptase (RNA-dependent DNA polymerase) domain-containing protein n=1 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179EVJ5_METCM)

HSP 1 Score: 103 bits (257), Expect = 1.300e-21
Identity = 73/247 (29.55%), Postives = 120/247 (48.58%), Query Frame = 1
Query:    1 QALVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            Q L + ++++K TDKNLG A+  +EWYI E  + L     Y  I++  ++ + L   YG             +  + K   N   M ++I         IP+F+ +PK+HK     RPI   HS  T+  S ++ +  +P+LDKL  V+  S+ +I     I  ++ + W + T DVV+ Y ++N +        A   +   +  P     I +++ FV+ N Y  F+D ++ Q  GLAMGT  AP
Sbjct:  125 QFLNDNDLLVKLTDKNLGLAVFQKEWYIQEIHKMLGSNKAYK-IASDLDMEQLLDTLYG-------------QLQRWKLPKN---MTRFIREK--TASKIPEFHAIPKVHKMPWALRPIVPSHSWVTSRVSEVVDHLCRPILDKLPWVVDSSKKVINNLSKIRIESDNVW-ICTGDVVAFYTNINARACCKVVCGAWHRYASDSKIPT--ETISQMIKFVMENNYFSFQDQVWKQLDGLAMGTSCAP 349          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A8C5PR15_9ANUR (Uncharacterized protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PR15_9ANUR)

HSP 1 Score: 100 bits (250), Expect = 5.180e-21
Identity = 77/243 (31.69%), Postives = 122/243 (50.21%), Query Frame = 1
Query:   19 NIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITV--GRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            ++++K TDK  G  +M RE+Y+ E  R L D  TY  ++              ++K+ELR   +L+   K    +      K     ++    I  FYILPKIHK +    GRPI +G    T+  S  + ++LQPV+ K  + LKD+  ++++ E I+++    +   T DV SLY S+  Q+ +     A  E  G+    QI   ++ IL F+L + +  FE+  +LQ  G AMGT  AP
Sbjct:  102 DLVVKQTDKGGGVVVMSREYYLKEAHRLLDDNITYKVLANDPT---------AIYKEELR---VLITEGKESGILTA----KEFDFLFSEFSVIALFYILPKIHKSLDAPPGRPIISGIDSQTSNLSKYIDFFLQPVVKKTRSYLKDTSHILRDLERINWEAGMMF--ATIDVTSLYTSIPHQKGVEAIKRALDED-GSLSIDQIEFLLKSIL-FILEHNFFWFENKFYLQICGPAMGTRFAP 324          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A0B7FZ58_THACB (Uncharacterized protein n=2 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FZ58_THACB)

HSP 1 Score: 98.2 bits (243), Expect = 9.630e-20
Identity = 71/262 (27.10%), Postives = 128/262 (48.85%), Query Frame = 1
Query:    1 QALVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKY--HINTEWMLKYITHNYTNGFAIP----KFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHF--DTRSTWTLVTADVVSLYPSLN-------VQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            Q L+E N+I+  +DKNLGCA++ R+W+I +    L +  +Y  I  +  I    +I     K    + +I+ + NK K      ++W+ +Y+     +   +     +FYI+PKIHK    GRPI   HS   +P + L    L+P++     ++  S+  I++   I +  + +S+  +V  D+ + YP++        V++++ N     +E +GA        F E  L+   +   ++F+D  F Q  GL+MG   AP
Sbjct:   93 QLLLEHNLILVPSDKNLGCALITRDWFIEQAENHLCNVNSYRKIDQNEAIQTLFEIATAC-KALGYNPYIIKRDNKGKIIRSQKSKWITQYVEKLDKDAKGVLDSTLRFYIIPKIHKSPWKGRPIVPAHSAIQSPAAKLCSIMLKPLIKSQPYIIHGSKDFIRKVSEIRYFCEEKSSIFIVGGDIEAYYPNVPKGKASQIVKEMMNNDPRQEEEGFGA--------FFEECLDVADSTVIMRFQDDWFAQTDGLSMGVAHAP 345          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A8C5PGF2_9ANUR (Uncharacterized protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PGF2_9ANUR)

HSP 1 Score: 97.8 bits (242), Expect = 1.210e-19
Identity = 77/243 (31.69%), Postives = 123/243 (50.62%), Query Frame = 1
Query:   19 NIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAIPKFYILPKIHKPITV--GRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            ++++K  DK  G  +M R++Y+ E  R L D TTY  +               ++K+ELR   +L+   K +  I T     ++   ++    I  FYILPKIHK +    GR I +G    T+  S  + Y+LQPV+ K  + LKD+  ++++ E I+++    +   T DV SLY S+  Q+ +     A  E  G+    QI   ++ IL F+L + +  FE+  +LQ  G AMGT  AP
Sbjct:  199 DLVVKQADKGGGVVVMSRDYYLKEAHRLLDDKTTYKVLVNDPT---------AIYKEELR---VLITEGK-ELGILTAKEFDFLFSEFS---VISLFYILPKIHKRLDAPPGRSIISGIDSQTSNLSKYIDYFLQPVVKKTRSYLKDTSHILRDLEKINWEAGMMF--ATIDVTSLYISIPQQKGVEAIKRALDED-GSLSVDQIEFLLKSIL-FILEHNFFWFENKFYLQVCGTAMGTRFAP 421          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A0L1IKU6_ASPNO (Uncharacterized protein n=1 Tax=Aspergillus nomiae NRRL 13137 TaxID=1509407 RepID=A0A0L1IKU6_ASPNO)

HSP 1 Score: 96.3 bits (238), Expect = 4.470e-19
Identity = 72/250 (28.80%), Postives = 113/250 (45.20%), Query Frame = 1
Query:    7 LVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNILKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFA---IPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEHYGATWPPQIHHF--IERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            L E  +I+K TDKNLG A+  +EWYI E ++ L D TTY  +++ +           M K   R L+ L K           W L +    +        +P F+ +PK+HK     RPI   HS  T+  S ++ Y  +                  +   I  D    W + T DVV+ Y +++ +    N +    +HY   +P    H   I +++ FV+ N Y +F++ ++ Q +GLAMGT SAP
Sbjct:  142 LQENRLIVKLTDKNLGIAVFPKEWYIHENMKMLGDMTTYRMVNSLD-----------MEKLLDRLLNQLPK-----------WSLPHNMERFVEAKTTTQVPVFHTIPKVHKEPWALRPIVPSHSWVTSRLSEVIDYLCRXXXXXXXXXXXXXXXXXNQLNEIRTDREDVW-ICTGDVVAFYTNIDAE-ACANLVQGGWQHY---YPDSKIHARKIAQMIRFVMQNNYFRFQNQLYQQIRGLAMGTASAP 364          
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Match: A0A066UYK6_9AGAM (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066UYK6_9AGAM)

HSP 1 Score: 94.7 bits (234), Expect = 1.540e-18
Identity = 69/268 (25.75%), Postives = 128/268 (47.76%), Query Frame = 1
Query:    1 QALVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNI-------LKCLKIKYGMHKDEL-RSLHILLKSNKHKYHINTEWMLKYITHNYTNG----FAIPKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLKDSRTLIQETEGIHF--DTRSTWTLVTADVVSLYPSLN-------VQQVIGNTLTATKEHYGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP 741
            Q L E N+I+  +DKNLGCA++ ++WY+ + +  L +  +Y  +  +  I       + C  +  G H     R    +L+S K K      W+++Y+     +      A P+FY++PKIHK    GRPI   HS   +P + L    L+P++ +   ++  S+  IQ+   I +  + +S   +V  D+ + YP++        V++++      ++  +G+        F E  L+       ++F+D  ++Q  GL+MG   AP
Sbjct:  125 QLLTELNLILVPSDKNLGCALITKDWYLEQAMVHLSNVNSYRKVEQNEAIEFINEQAMACEAL--GFHPYVCTRENGKILRSQKSK------WIIQYVEKLKKDATPVLLATPRFYVIPKIHKSPWKGRPIVPAHSAVHSPAAKLTSMMLKPLVKRQPYIIHGSKDFIQKVSQIRWFREEKSRIFIVGGDIEAYYPNVPKGRASQIVKEMMDQDPRQSENDFGS--------FFEECLDTADKTVVMRFQDDWYIQTDGLSMGVAHAP 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig60701.13758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9RII3_9CHLO1.950e-3234.85Uncharacterized protein n=2 Tax=Coccomyxa sp. Obi ... [more]
M7WJ66_RHOT19.160e-2931.02Reverse transcriptase (Fragment) n=2 Tax=Rhodospor... [more]
UPI00109BA0B32.360e-2434.82uncharacterized protein LOC114576718 n=1 Tax=Exaip... [more]
A0A074RDK1_9AGAM2.430e-2227.95Reverse transcriptase n=1 Tax=Rhizoctonia solani 1... [more]
A0A179EVJ5_METCM1.300e-2129.55Reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A8C5PR15_9ANUR5.180e-2131.69Uncharacterized protein n=1 Tax=Leptobrachium leis... [more]
A0A0B7FZ58_THACB9.630e-2027.10Uncharacterized protein n=2 Tax=Thanatephorus cucu... [more]
A0A8C5PGF2_9ANUR1.210e-1931.69Uncharacterized protein n=1 Tax=Leptobrachium leis... [more]
A0A0L1IKU6_ASPNO4.470e-1928.80Uncharacterized protein n=1 Tax=Aspergillus nomiae... [more]
A0A066UYK6_9AGAM1.540e-1825.75Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig60701contigH-paniculata_contig60701:194..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score125.6
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog5286.M7WJ66
Hectar predicted targeting categoryother localisation
EggNOG OGs2CVN4@1,2RSCH@2759,38Y7D@33154,3P7RD@4751,3V71K@5204
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size741
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.2199817-CDS-H-paniculata_contig60701:193..9341622930678.2199817-CDS-H-paniculata_contig60701:193..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60701 194..934 +
1691481402.4245532-CDS-H-paniculata_contig60701:193..9341691481402.4245532-CDS-H-paniculata_contig60701:193..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig60701 194..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig60701.13758.1prot_H-paniculata_contig60701.13758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig60701 194..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig60701.13758.1

>prot_H-paniculata_contig60701.13758.1 ID=prot_H-paniculata_contig60701.13758.1|Name=mRNA_H-paniculata_contig60701.13758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
QALVEKNIIIKSTDKNLGCAIMGREWYISECLRQLLDPTTYTAISTSNNI
LKCLKIKYGMHKDELRSLHILLKSNKHKYHINTEWMLKYITHNYTNGFAI
PKFYILPKIHKPITVGRPIAAGHSGATTPWSALLCYWLQPVLDKLETVLK
DSRTLIQETEGIHFDTRSTWTLVTADVVSLYPSLNVQQVIGNTLTATKEH
YGATWPPQIHHFIERILNFVLNNGYVQFEDSIFLQHKGLAMGTPSAP
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mRNA from alignment at H-paniculata_contig60701:194..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig60701.13758.1 ID=mRNA_H-paniculata_contig60701.13758.1|Name=mRNA_H-paniculata_contig60701.13758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig60701:194..934+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCCCTCGTAGAGAAAAACATCATTATCAAATCTACTGATAAGAACCT TGGTTGCGCTATTATGGGACGCGAATGGTACATTTCAGAATGTTTAAGGC AATTACTTGACCCGACCACTTACACTGCAATCAGTACAAGTAACAACATT CTGAAGTGCCTCAAAATCAAATATGGCATGCATAAAGATGAACTTCGCAG CTTGCACATATTATTAAAATCCAACAAGCATAAATACCATATCAACACGG AATGGATGCTTAAGTATATCACTCACAACTATACTAATGGTTTCGCAATC CCAAAATTTTACATCTTACCCAAGATACACAAGCCTATCACAGTAGGTAG ACCCATTGCAGCAGGCCATAGTGGTGCAACCACCCCATGGTCAGCATTGT TATGCTACTGGCTGCAACCAGTACTAGATAAGCTTGAAACTGTTTTGAAA GACAGCCGAACATTAATCCAAGAAACGGAGGGTATTCATTTTGACACCAG ATCCACTTGGACTCTTGTAACAGCTGATGTCGTAAGCCTCTACCCCTCAC TTAATGTACAACAGGTCATTGGCAACACCTTGACAGCAACCAAAGAGCAT TATGGCGCCACCTGGCCCCCACAAATTCATCACTTCATCGAACGAATTTT GAATTTTGTGCTCAATAATGGTTATGTACAATTTGAGGACAGTATATTTC TACAACACAAAGGCTTAGCTATGGGAACCCCCAGTGCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig60701:194..934+

>mRNA_H-paniculata_contig60701.13758.1 ID=mRNA_H-paniculata_contig60701.13758.1|Name=mRNA_H-paniculata_contig60701.13758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig60701:194..934+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCCCTCGTAGAGAAAAACATCATTATCAAATCTACTGATAAGAACCT
TGGTTGCGCTATTATGGGACGCGAATGGTACATTTCAGAATGTTTAAGGC
AATTACTTGACCCGACCACTTACACTGCAATCAGTACAAGTAACAACATT
CTGAAGTGCCTCAAAATCAAATATGGCATGCATAAAGATGAACTTCGCAG
CTTGCACATATTATTAAAATCCAACAAGCATAAATACCATATCAACACGG
AATGGATGCTTAAGTATATCACTCACAACTATACTAATGGTTTCGCAATC
CCAAAATTTTACATCTTACCCAAGATACACAAGCCTATCACAGTAGGTAG
ACCCATTGCAGCAGGCCATAGTGGTGCAACCACCCCATGGTCAGCATTGT
TATGCTACTGGCTGCAACCAGTACTAGATAAGCTTGAAACTGTTTTGAAA
GACAGCCGAACATTAATCCAAGAAACGGAGGGTATTCATTTTGACACCAG
ATCCACTTGGACTCTTGTAACAGCTGATGTCGTAAGCCTCTACCCCTCAC
TTAATGTACAACAGGTCATTGGCAACACCTTGACAGCAACCAAAGAGCAT
TATGGCGCCACCTGGCCCCCACAAATTCATCACTTCATCGAACGAATTTT
GAATTTTGTGCTCAATAATGGTTATGTACAATTTGAGGACAGTATATTTC
TACAACACAAAGGCTTAGCTATGGGAACCCCCAGTGCCCCCCAAGCCCTC
GTAGAGAAAAACATCATTATCAAATCTACTGATAAGAACCTTGGTTGCGC
TATTATGGGACGCGAATGGTACATTTCAGAATGTTTAAGGCAATTACTTG
ACCCGACCACTTACACTGCAATCAGTACAAGTAACAACATTCTGAAGTGC
CTCAAAATCAAATATGGCATGCATAAAGATGAACTTCGCAGCTTGCACAT
ATTATTAAAATCCAACAAGCATAAATACCATATCAACACGGAATGGATGC
TTAAGTATATCACTCACAACTATACTAATGGTTTCGCAATCCCAAAATTT
TACATCTTACCCAAGATACACAAGCCTATCACAGTAGGTAGACCCATTGC
AGCAGGCCATAGTGGTGCAACCACCCCATGGTCAGCATTGTTATGCTACT
GGCTGCAACCAGTACTAGATAAGCTTGAAACTGTTTTGAAAGACAGCCGA
ACATTAATCCAAGAAACGGAGGGTATTCATTTTGACACCAGATCCACTTG
GACTCTTGTAACAGCTGATGTCGTAAGCCTCTACCCCTCACTTAATGTAC
AACAGGTCATTGGCAACACCTTGACAGCAACCAAAGAGCATTATGGCGCC
ACCTGGCCCCCACAAATTCATCACTTCATCGAACGAATTTTGAATTTTGT
GCTCAATAATGGTTATGTACAATTTGAGGACAGTATATTTCTACAACACA
AAGGCTTAGCTATGGGAACCCCCAGTGCCCCC
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