mRNA_H-paniculata_contig6070.13757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6070.13757.1
Unique NamemRNA_H-paniculata_contig6070.13757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6070.13757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6070contigH-paniculata_contig6070:9320..11884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6070.13757.1prot_H-paniculata_contig6070.13757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6070 9320..11884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930678.1493483-CDS-H-paniculata_contig6070:9319..94801622930678.1493483-CDS-H-paniculata_contig6070:9319..9480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 9320..9480 -
1691481402.3938496-CDS-H-paniculata_contig6070:9319..94801691481402.3938496-CDS-H-paniculata_contig6070:9319..9480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 9320..9480 -
1622930678.1620486-CDS-H-paniculata_contig6070:11020..111061622930678.1620486-CDS-H-paniculata_contig6070:11020..11106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 11021..11106 -
1691481402.4066458-CDS-H-paniculata_contig6070:11020..111061691481402.4066458-CDS-H-paniculata_contig6070:11020..11106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 11021..11106 -
1622930678.1816168-CDS-H-paniculata_contig6070:11831..118841622930678.1816168-CDS-H-paniculata_contig6070:11831..11884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 11832..11884 -
1691481402.4153767-CDS-H-paniculata_contig6070:11831..118841691481402.4153767-CDS-H-paniculata_contig6070:11831..11884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6070 11832..11884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6070.13757.1

>prot_H-paniculata_contig6070.13757.1 ID=prot_H-paniculata_contig6070.13757.1|Name=mRNA_H-paniculata_contig6070.13757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
GGTGGAGCSYGGVGGLGRRRCAPFSSHQGGSKGGSKGGRGSYGGRKGGAC
RSTVSRQQQQQQQQQQQQQQQQQQQQQRWIIQTQRRDSFNRTTTPAAVAA
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mRNA from alignment at H-paniculata_contig6070:9320..11884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6070.13757.1 ID=mRNA_H-paniculata_contig6070.13757.1|Name=mRNA_H-paniculata_contig6070.13757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2565bp|location=Sequence derived from alignment at H-paniculata_contig6070:9320..11884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCACCGGGGGCGCCGGCTGTAGCTACGGTGGCGTCGGTGGGCTCGG
CAGGTGGGAGTTATGGAAAAATGTATTAGGAGTTAGTTCCCTCATGACTA
CTGTACGAGTGATGTAGTTATTGCAGTTGCAGTCGCTGTGTTGCTTCATA
GGAGCTTCTTTTCCGGGGAATTATTAGTTGTATGTTGTACCAAGACAGTA
GGATTTTTTGTCGATTTTTTTTTTGTGGTGGGAGTAATTCCGGAGATGAG
ATTAGTCGTAGTAGTGTTTAGACTTGAGCGCTCCCCCACTCCAGACAACC
AGTTAGCAAATGAGTCTATCTCAGTTCCTAAAAAAGTTATCTTTTTTTTA
GTTTTGTTGTTTTCGTTTGCCGATTCAGGGTTCGGAATATATTTCTCTTG
GATTCAGGATCGCGCGAGACGGGCAAACACCAGCGTCATTTCGTGACGGC
CGCCGAATAACACAGCACGAAAGAGACTAATACTATATTACCACTACGGC
TAGGCTACGCCCATGCAAGTCGTGTTGGCTAGTCCTCGACCCGCGGACTC
GCTGCGCTCGCAGTGTTGTTCGCTACAGTAGCAATACCCTATGTTCGCTA
CGAAGATTCTATTTTTAGTATCACTCTAGTACAGTGTTGAAAAGCTGTTC
CGAAACGACGACTTCGATCACGACAGCCTCAACGTCCTGAGTAAATGATG
AGGGATATCCTGCGTTGCGGATTAGTGGGTTGTAGGCGATTCCAAAAAGT
TGCCCTATGCCGGCGCTCCGTTACAAAGGCGCAGGTGCGCTCCGTTTTCA
TCCCACCAAGGCGGAAGCAAAGGCGGCAGCAAAGGCGGCCGCGGCAGTTA
TGGCGGCCGCAAAGGTGGGTTCGCTATATTTTGTTTGCAAGGCTTGGGGC
CGTTCTAAATGAGAGGCTAATTTTTGTCCGATATATTCCATTTTTCCTTT
TTTCCGGAAAAAAATGGAAATGGTGATAATAGCAAGCTGAGAATCGAGGG
AAAAGGTGCGTAAACACTGAACACTGTATAGCATATTGCCCTCATACTTC
TAGTAGACTTTGATCCCAATCGTTAACTTGTTCAGCCCGCTATTATCGCG
ATTTCCTTTTTTTATGGACGTCAAGACGGGTAGCCTCGTTTAGAACATGC
CTCATCACGGGACCGGACGGGACTAGGGTATTTGACTTGTAAATGACGGG
GCGAGGAGGATTGATATTGCGATGGCTCGGGACGGAACATTGCGGTTGAG
ATTTGGCGGGGACAAGACGGGAGGAGATCATCGTTTCTGCGTCTCGTCCG
TTCCCGTGAGGGTCCCGTGATGAACCCTGGAGCTGTCTGTTCTTTTGCAG
TTTGTTGGTTGTTGGCATGCTGAGCGAGTCGAATCCGTACAGGGTATATC
TATCGGCCCACTTGTGGGAAAACAGTAAATAGGGTTATACACAGGATTCT
CAATAGGCTGTGCAGGTTTCCAATAAAAATATATATATATATTTCTTGGC
TGTGGGGTTCTGCGTGTATACTCAATCCAGGTTAGCTACTACTTTAGCTT
CCAAACGCACCGTTGTACCCCTGGATCGTCTCTGTTTCTTTTGTGACAGG
GCTAGTTCATGCTGTACATGGAAGATGACATGCAGACGTACGCATGACAG
ACCAAATTCTATTATAGTAGAGCTCTGCTTGTGTAGACTTGCTTGCTACG
AGCAAACGTGGCGAATATTGTGAAAACATATTCTCAAGGCAGATCCAAAC
AAGACGTGGCGAATATTGTGAAAGCGTGTGCTCAAAGCAGACCCACTTTC
TGCAATGATATCAGCTGTCGAAAGTGCTTTTTAATTTAGACCAAGTTTCA
CGAAACGCAGGATATAGAGCACATATCATGGTCGCAGCAGCAGTCTACGC
CAGTTTATTGCTGTGAGTTATCTCTCTAGCCGTTAGTTGAGTTGGGCAAA
TTACACTGATAAAGGACAAGGTTCTCCCGGTGCTGTTGTTTTTTTCCTTC
CTTTGTCTTCGCTTGTGTTCTTGTTCAACGGGCATGCCTTCAAGTACGGC
GTATTTATCTTGCACATGATGCAAGAAAAACTACGTCGTTCAGGGTATAT
CACAGAGGCAGTCGACGTTTGATACAATGTGTAGACAAGGGTGCACTTCA
TGGCGTCTTTGTTTAGTGGGACGGTGATGTCGAATACGTTTGTGGCACTT
GCGGTCCGGTATACAGTTCGTGTAAATGAGCGTCCCAGTGGTGCTTACTT
GCGTTATATCTGCATAGCCTCAAATCGCTAGTACTGCCTGCATATATCGG
GAGGGAGAAAAGGAGGTCGGAATGTCGATGAGGGCTGGTAGACGTAACCC
CCGTCCTCCTTCTCCGACACTCCGTTCATCCCTACCCTTGACCCACGAAA
AAAGGTGGTGCATGCAGGTCCACTGTCTCCCGGCAACAACAACAACAACA
ACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACGCT
GGATCATCCAAACGCAACGTCGCGATAGCTTCAACAGGACAACAACACCC
GCCGCAGTCGCAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6070:9320..11884-

>mRNA_H-paniculata_contig6070.13757.1 ID=mRNA_H-paniculata_contig6070.13757.1|Name=mRNA_H-paniculata_contig6070.13757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig6070:9320..11884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCACCGGGGGCGCCGGCTGTAGCTACGGTGGCGTCGGTGGGCTCGG
CAGGGGGGCACCGGGGGCGCCGGCTGTAGCTACGGTGGCGTCGGTGGGCT
CGGCAGGCGCAGGTGCGCTCCGTTTTCATCCCACCAAGGCGGAAGCAAAG
GCGGCAGCAAAGGCGGCCGCGGCAGTTATGGCGGCCGCAAAGGCGCAGGT
GCGCTCCGTTTTCATCCCACCAAGGCGGAAGCAAAGGCGGCAGCAAAGGC
GGCCGCGGCAGTTATGGCGGCCGCAAAGGTGGTGCATGCAGGTCCACTGT
CTCCCGGCAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAACAACGCTGGATCATCCAAACGCAACGTCGCGAT
AGCTTCAACAGGACAACAACACCCGCCGCAGTCGCAGCCGTGGTGCATGC
AGGTCCACTGTCTCCCGGCAACAACAACAACAACAACAACAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACGCTGGATCATCCAAACGC
AACGTCGCGATAGCTTCAACAGGACAACAACACCCGCCGCAGTCGCAGCC
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