mRNA_H-paniculata_contig607.13755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig607.13755.1
Unique NamemRNA_H-paniculata_contig607.13755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig607.13755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig607contigH-paniculata_contig607:15864..16304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig607.13755.1prot_H-paniculata_contig607.13755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig607 15909..16241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.8350935-UTR-H-paniculata_contig607:15863..159081622930677.8350935-UTR-H-paniculata_contig607:15863..15908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 15864..15908 +
1691481402.2354314-UTR-H-paniculata_contig607:15863..159081691481402.2354314-UTR-H-paniculata_contig607:15863..15908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 15864..15908 +
1622930677.8682668-UTR-H-paniculata_contig607:16241..163041622930677.8682668-UTR-H-paniculata_contig607:16241..16304Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 16242..16304 +
1691481402.2686715-UTR-H-paniculata_contig607:16241..163041691481402.2686715-UTR-H-paniculata_contig607:16241..16304Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 16242..16304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.8474767-CDS-H-paniculata_contig607:15908..162411622930677.8474767-CDS-H-paniculata_contig607:15908..16241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 15909..16241 +
1691481402.248633-CDS-H-paniculata_contig607:15908..162411691481402.248633-CDS-H-paniculata_contig607:15908..16241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 15909..16241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig607.13755.1

>prot_H-paniculata_contig607.13755.1 ID=prot_H-paniculata_contig607.13755.1|Name=mRNA_H-paniculata_contig607.13755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MDSRSTLTGAWCEHTFGEEYPTIRTEQRAWWEDVYGITLNSLQLSIVQGN
GKIPNSITNASKDVSKKLAKNPKGGNESTDDGNDGNDGNDIEVFDVLHLG
DDSDSEVDLL*
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mRNA from alignment at H-paniculata_contig607:15864..16304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig607.13755.1 ID=mRNA_H-paniculata_contig607.13755.1|Name=mRNA_H-paniculata_contig607.13755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig607:15864..16304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGACCAAATACCAGCCGACCTGGTGAGGAAGTGCTTCAATACCTATGGA
CTCACGCTCAACCTTGACGGGAGCGTGGTGTGAACACACATTCGGCGAGG
AATACCCCACGATCCGGACGGAGCAGCGGGCCTGGTGGGAGGATGTATAC
GGCATCACCCTAAATTCGCTACAGCTATCCATTGTACAGGGCAACGGAAA
GATTCCCAACTCCATCACCAATGCGTCGAAGGATGTTTCAAAGAAGTTAG
CCAAGAACCCGAAGGGCGGGAACGAAAGCACGGACGATGGGAACGATGGG
AACGATGGGAACGATATCGAGGTGTTCGATGTTCTTCACTTGGGAGATGA
CTCTGATTCTGAAGTCGACCTGTTGTAGGGTCGGTTACGTTTTTTTTGTT
CTTGTTTCATGTTTCTGGGGGCATAGTATGTCAGAGTGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig607:15864..16304+

>mRNA_H-paniculata_contig607.13755.1 ID=mRNA_H-paniculata_contig607.13755.1|Name=mRNA_H-paniculata_contig607.13755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig607:15864..16304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCACGCTCAACCTTGACGGGAGCGTGGTGTGAACACACATTCGG
CGAGGAATACCCCACGATCCGGACGGAGCAGCGGGCCTGGTGGGAGGATG
TATACGGCATCACCCTAAATTCGCTACAGCTATCCATTGTACAGGGCAAC
GGAAAGATTCCCAACTCCATCACCAATGCGTCGAAGGATGTTTCAAAGAA
GTTAGCCAAGAACCCGAAGGGCGGGAACGAAAGCACGGACGATGGGAACG
ATGGGAACGATGGGAACGATATCGAGGTGTTCGATGTTCTTCACTTGGGA
GATGACTCTGATTCTGAAGTCGACCTGTTGTAGATGGACTCACGCTCAAC
CTTGACGGGAGCGTGGTGTGAACACACATTCGGCGAGGAATACCCCACGA
TCCGGACGGAGCAGCGGGCCTGGTGGGAGGATGTATACGGCATCACCCTA
AATTCGCTACAGCTATCCATTGTACAGGGCAACGGAAAGATTCCCAACTC
CATCACCAATGCGTCGAAGGATGTTTCAAAGAAGTTAGCCAAGAACCCGA
AGGGCGGGAACGAAAGCACGGACGATGGGAACGATGGGAACGATGGGAAC
GATATCGAGGTGTTCGATGTTCTTCACTTGGGAGATGACTCTGATTCTGA
AGTCGACCTGTTGTAG
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