mRNA_H-paniculata_contig607.13754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig607.13754.1
Unique NamemRNA_H-paniculata_contig607.13754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig607.13754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig607contigH-paniculata_contig607:13346..13942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig607.13754.1prot_H-paniculata_contig607.13754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig607 13528..13827 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.7663052-UTR-H-paniculata_contig607:13345..135271622930677.7663052-UTR-H-paniculata_contig607:13345..13527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 13346..13527 +
1691481402.197915-UTR-H-paniculata_contig607:13345..135271691481402.197915-UTR-H-paniculata_contig607:13345..13527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 13346..13527 +
1622930677.7911055-UTR-H-paniculata_contig607:13827..139421622930677.7911055-UTR-H-paniculata_contig607:13827..13942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 13828..13942 +
1691481402.2209425-UTR-H-paniculata_contig607:13827..139421691481402.2209425-UTR-H-paniculata_contig607:13827..13942Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 13828..13942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.7791529-CDS-H-paniculata_contig607:13527..138271622930677.7791529-CDS-H-paniculata_contig607:13527..13827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 13528..13827 +
1691481402.2076397-CDS-H-paniculata_contig607:13527..138271691481402.2076397-CDS-H-paniculata_contig607:13527..13827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 13528..13827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig607.13754.1

>prot_H-paniculata_contig607.13754.1 ID=prot_H-paniculata_contig607.13754.1|Name=mRNA_H-paniculata_contig607.13754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MLIIQLTHPQGQGIESVCICLWGYRGSYKAADKLRDPLLYVMPHYIYELH
ALHPGISQYYPWSEEKGAKSKAIAKQYCTHHHPHYIVEETVVRDLYEIC*
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mRNA from alignment at H-paniculata_contig607:13346..13942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig607.13754.1 ID=mRNA_H-paniculata_contig607.13754.1|Name=mRNA_H-paniculata_contig607.13754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig607:13346..13942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGTAACGCTGTAAAATGTAATACGAGTGAAAAGTACGTACTCGTCTTT
GGCTGTGCCTTGTACTCTCTCCTGTGTGCGGTACAACGATCGCGGGTTTG
AGCGAAGACCTTCAGAAAAAAAGCTGCAGCTCCACTATTATGACGCGCGG
TGCAGTACTGGGGGGGTTCAGTGCGATGATGAATGTTGATTATCCAACTA
ACACATCCGCAGGGCCAGGGTATAGAATCGGTGTGCATTTGCCTCTGGGG
GTATAGAGGATCATACAAGGCAGCGGACAAACTCCGTGACCCGCTCCTCT
ATGTGATGCCTCATTACATATACGAACTCCATGCTCTACACCCTGGTATT
TCTCAATACTATCCATGGAGTGAAGAAAAAGGAGCCAAGTCAAAAGCCAT
TGCGAAGCAATACTGTACCCATCACCATCCACACTATATTGTTGAGGAAA
CCGTTGTGCGAGATTTGTATGAGATTTGCTGATTTGCCGTTGCCTGGCCG
AGATTCTGAGCTGTGAATTCGAACAACTGAATTGTTTGGCGCACTGAAGC
GTCAGTTGCGCGCTACATAATTCATGCTGGTTTTAGCGTATCAGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig607:13346..13942+

>mRNA_H-paniculata_contig607.13754.1 ID=mRNA_H-paniculata_contig607.13754.1|Name=mRNA_H-paniculata_contig607.13754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig607:13346..13942+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGATTATCCAACTAACACATCCGCAGGGCCAGGGTATAGAATCGGT
GTGCATTTGCCTCTGGGGGTATAGAGGATCATACAAGGCAGCGGACAAAC
TCCGTGACCCGCTCCTCTATGTGATGCCTCATTACATATACGAACTCCAT
GCTCTACACCCTGGTATTTCTCAATACTATCCATGGAGTGAAGAAAAAGG
AGCCAAGTCAAAAGCCATTGCGAAGCAATACTGTACCCATCACCATCCAC
ACTATATTGTTGAGGAAACCGTTGTGCGAGATTTGTATGAGATTTGCTGA
ATGTTGATTATCCAACTAACACATCCGCAGGGCCAGGGTATAGAATCGGT
GTGCATTTGCCTCTGGGGGTATAGAGGATCATACAAGGCAGCGGACAAAC
TCCGTGACCCGCTCCTCTATGTGATGCCTCATTACATATACGAACTCCAT
GCTCTACACCCTGGTATTTCTCAATACTATCCATGGAGTGAAGAAAAAGG
AGCCAAGTCAAAAGCCATTGCGAAGCAATACTGTACCCATCACCATCCAC
ACTATATTGTTGAGGAAACCGTTGTGCGAGATTTGTATGAGATTTGCTGA
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