mRNA_H-paniculata_contig607.13753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig607.13753.1
Unique NamemRNA_H-paniculata_contig607.13753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig607.13753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig607contigH-paniculata_contig607:12240..12690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig607.13753.1prot_H-paniculata_contig607.13753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig607 12338..12649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.6893206-UTR-H-paniculata_contig607:12239..123371622930677.6893206-UTR-H-paniculata_contig607:12239..12337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 12240..12337 +
1691481402.1700892-UTR-H-paniculata_contig607:12239..123371691481402.1700892-UTR-H-paniculata_contig607:12239..12337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 12240..12337 +
1622930677.7220614-UTR-H-paniculata_contig607:12649..126901622930677.7220614-UTR-H-paniculata_contig607:12649..12690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 12650..12690 +
1691481402.1886299-UTR-H-paniculata_contig607:12649..126901691481402.1886299-UTR-H-paniculata_contig607:12649..12690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig607 12650..12690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930677.707661-CDS-H-paniculata_contig607:12337..126491622930677.707661-CDS-H-paniculata_contig607:12337..12649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 12338..12649 +
1691481402.1797023-CDS-H-paniculata_contig607:12337..126491691481402.1797023-CDS-H-paniculata_contig607:12337..12649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig607 12338..12649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig607.13753.1

>prot_H-paniculata_contig607.13753.1 ID=prot_H-paniculata_contig607.13753.1|Name=mRNA_H-paniculata_contig607.13753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTKDMEQSKIKVRCNQRACKCCALMLICDTAAFFTLFAFTIDSNIVIRGD
FRLCVLLIQGTKKTYRYHRSVKRVHRHFLSHRDLPRNDSCFPFLQSRAVP
TAI*
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mRNA from alignment at H-paniculata_contig607:12240..12690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig607.13753.1 ID=mRNA_H-paniculata_contig607.13753.1|Name=mRNA_H-paniculata_contig607.13753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at H-paniculata_contig607:12240..12690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGAAAAGTTTAACTACCAAAAAGTGGAGAAGTAAGGTAAATCGGCAGA
AGACCACGGCGCCCTTGACCTGCTGCAGTTAGCCAGTGCTATCATGTGAT
GACCAAGGATATGGAGCAGTCGAAGATTAAGGTGCGGTGTAACCAAAGGG
CGTGCAAATGCTGTGCTCTCATGCTCATATGCGATACTGCAGCATTTTTT
ACGTTGTTTGCTTTCACAATCGATTCTAACATCGTCATAAGAGGAGATTT
CCGACTCTGTGTCCTCTTGATACAGGGAACGAAGAAAACCTACAGATATC
ACAGGTCGGTGAAGCGGGTGCATCGCCATTTCCTCTCACACCGTGACTTG
CCACGAAACGATAGCTGTTTCCCTTTCCTCCAAAGTCGCGCTGTTCCAAC
CGCGATATGAAACAACACGGTCCAATTACATTACTTGATGACATTTAACG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig607:12240..12690+

>mRNA_H-paniculata_contig607.13753.1 ID=mRNA_H-paniculata_contig607.13753.1|Name=mRNA_H-paniculata_contig607.13753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig607:12240..12690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAAGGATATGGAGCAGTCGAAGATTAAGGTGCGGTGTAACCAAAG
GGCGTGCAAATGCTGTGCTCTCATGCTCATATGCGATACTGCAGCATTTT
TTACGTTGTTTGCTTTCACAATCGATTCTAACATCGTCATAAGAGGAGAT
TTCCGACTCTGTGTCCTCTTGATACAGGGAACGAAGAAAACCTACAGATA
TCACAGGTCGGTGAAGCGGGTGCATCGCCATTTCCTCTCACACCGTGACT
TGCCACGAAACGATAGCTGTTTCCCTTTCCTCCAAAGTCGCGCTGTTCCA
ACCGCGATATGAATGACCAAGGATATGGAGCAGTCGAAGATTAAGGTGCG
GTGTAACCAAAGGGCGTGCAAATGCTGTGCTCTCATGCTCATATGCGATA
CTGCAGCATTTTTTACGTTGTTTGCTTTCACAATCGATTCTAACATCGTC
ATAAGAGGAGATTTCCGACTCTGTGTCCTCTTGATACAGGGAACGAAGAA
AACCTACAGATATCACAGGTCGGTGAAGCGGGTGCATCGCCATTTCCTCT
CACACCGTGACTTGCCACGAAACGATAGCTGTTTCCCTTTCCTCCAAAGT
CGCGCTGTTCCAACCGCGATATGA
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